Guide to the Human Genome
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Name: HABP2 Sequence: fasta or formatted (560aa) NCBI GI: 4758502
Description:

hyaluronan binding protein 2 preproprotein

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         26           2
 C cysteine            6.6         37           1
 D aspartate           6.4         36           2
 E glutamate           5.5         31           2
 F phenylalanine       3.4         19           1
 G glycine             7.9         44           2
 H histidine           3.8         21           1
 I isoleucine          3.6         20           1
 K lysine              7.0         39           2
 L leucine             7.1         40           3
 M methionine          1.8         10           1
 N asparagine          4.1         23           1
 P proline             5.9         33           2
 Q glutamine           4.5         25           1
 R arginine            3.2         18           2
 S serine              7.5         42           2
 T threonine           6.1         34           1
 V valine              4.8         27           2
 W tryptophan          1.8         10           1
 Y tyrosine            4.5         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hyaluronan binding protein 2 preproprotein 
HGFAC                 0.236   HGF activator preproprotein 
PLAT                  0.212   plasminogen activator, tissue isoform 1 preproprotein...
PLAT                  0.212   plasminogen activator, tissue isoform 3 preproprotei...
F12                   0.188   coagulation factor XII precursor 
PLAU                  0.185   plasminogen activator, urokinase isoform 2 
PLAU                  0.185   plasminogen activator, urokinase isoform 1 preproprot...
PLG                   0.156   plasminogen 
LPA                   0.139   lipoprotein Lp(a) precursor 
PRSS12                0.115   neurotrypsin precursor 
TMPRSS2               0.112   transmembrane protease, serine 2 isoform 1 
TMPRSS2               0.112   transmembrane protease, serine 2 isoform 2 
TMPRSS3               0.111   transmembrane protease, serine 3 isoform 1 
F9                    0.109   coagulation factor IX preproprotein 
CTRB1                 0.106   chymotrypsin B1 
TMPRSS9               0.105   transmembrane protease, serine 9 
TPSAB1                0.104   tryptase alpha/beta 1 precursor 
ACR                   0.103   acrosin precursor 
TMPRSS13              0.103   transmembrane protease, serine 13 
PRSS8                 0.102   prostasin preproprotein 
TMPRSS6               0.102   transmembrane protease, serine 6 
KLKB1                 0.101   plasma kallikrein B1 precursor 
CTRB2                 0.101   chymotrypsin B2 
TMPRSS11D             0.101   transmembrane protease, serine 11D 
TPSB2                 0.101   tryptase beta 2 precursor 
TMPRSS4               0.100   transmembrane protease, serine 4 isoform 3 
TMPRSS4               0.100   transmembrane protease, serine 4 isoform 1 
TMPRSS5               0.098   transmembrane protease, serine 5 
KLK6                  0.097   kallikrein-related peptidase 6 isoform A preproprote...
KLK6                  0.097   kallikrein-related peptidase 6 isoform A preproprotei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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