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Search of human proteins with 239747524
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747524 PREDICTED: similar to serum response
factor-related protein C4 [Homo sapiens]
(434 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747524 PREDICTED: similar to serum response factor-related... 889 0.0
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 380 e-105
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 317 2e-86
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 315 4e-86
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 312 3e-85
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 254 1e-67
gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens] 188 7e-48
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 172 7e-43
gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens] 149 4e-36
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 149 4e-36
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 147 2e-35
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 147 2e-35
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 138 1e-32
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc... 132 5e-31
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl... 132 6e-31
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl... 132 6e-31
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 126 4e-29
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 126 4e-29
gi|55956899 keratin 9 [Homo sapiens] 88 1e-17
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 85 1e-16
gi|195972866 keratin 10 [Homo sapiens] 83 4e-16
gi|109255251 loricrin [Homo sapiens] 79 6e-15
gi|119395750 keratin 1 [Homo sapiens] 79 1e-14
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 79 1e-14
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 79 1e-14
gi|47132620 keratin 2 [Homo sapiens] 75 2e-13
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 72 1e-12
gi|109452587 family with sequence similarity 98, member B isofor... 72 1e-12
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 64 3e-10
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 63 5e-10
>gi|239747524 PREDICTED: similar to serum response factor-related
protein C4 [Homo sapiens]
Length = 434
Score = 889 bits (2298), Expect = 0.0
Identities = 434/434 (100%), Positives = 434/434 (100%)
Query: 1 MPESQSSNNSLTPNTRSIIKVSLLPAVLSNSESPKEPKQLRKLFLGRGDGYNGFGNDGGY 60
MPESQSSNNSLTPNTRSIIKVSLLPAVLSNSESPKEPKQLRKLFLGRGDGYNGFGNDGGY
Sbjct: 1 MPESQSSNNSLTPNTRSIIKVSLLPAVLSNSESPKEPKQLRKLFLGRGDGYNGFGNDGGY 60
Query: 61 GGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYN 120
GGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYN
Sbjct: 61 GGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYN 120
Query: 121 DFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSSRHYQDVLASP 180
DFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSSRHYQDVLASP
Sbjct: 121 DFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSSRHYQDVLASP 180
Query: 181 KLKEAAPGSAERWRRAQAAAYIVEALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEF 240
KLKEAAPGSAERWRRAQAAAYIVEALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEF
Sbjct: 181 KLKEAAPGSAERWRRAQAAAYIVEALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEF 240
Query: 241 DNMMQNHNIAPGLPPQNFSMSVTVPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSP 300
DNMMQNHNIAPGLPPQNFSMSVTVPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSP
Sbjct: 241 DNMMQNHNIAPGLPPQNFSMSVTVPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSP 300
Query: 301 PQTILHRNVSPGAPQRPPSTGNAGGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGAT 360
PQTILHRNVSPGAPQRPPSTGNAGGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGAT
Sbjct: 301 PQTILHRNVSPGAPQRPPSTGNAGGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGAT 360
Query: 361 GANSLGKVMPTKSPPPPGGSNLGMNSGKPDLRVVIPASSKGMTPPLELKSERKRESSILS 420
GANSLGKVMPTKSPPPPGGSNLGMNSGKPDLRVVIPASSKGMTPPLELKSERKRESSILS
Sbjct: 361 GANSLGKVMPTKSPPPPGGSNLGMNSGKPDLRVVIPASSKGMTPPLELKSERKRESSILS 420
Query: 421 TNEFIKVYQMLIPQ 434
TNEFIKVYQMLIPQ
Sbjct: 421 TNEFIKVYQMLIPQ 434
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 380 bits (976), Expect = e-105
Identities = 188/205 (91%), Positives = 191/205 (93%)
Query: 202 IVEALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQNFSMS 261
IVEALNKKEHRGCDS DPDTS VLTP+TEEKYKKINEEFDNMM+NH IAPGLPPQNFSMS
Sbjct: 84 IVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMS 143
Query: 262 VTVPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSPPQTILHRNVSPGAPQRPPSTG 321
VTVPV SPNALSYTNPGSSLVSPSLAASSTLTD + LSPPQT LHRNVSPGAPQRPPSTG
Sbjct: 144 VTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTG 203
Query: 322 NAGGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGSN 381
NAGGML TTDLTVPNG GSSPVGN FVNSRASPNLIGATGANSLGKVMPTKSPPPPGG N
Sbjct: 204 NAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGN 263
Query: 382 LGMNSGKPDLRVVIPASSKGMTPPL 406
LGMNS KPDLRVVIP SSKGM PPL
Sbjct: 264 LGMNSRKPDLRVVIPPSSKGMMPPL 288
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 317 bits (811), Expect = 2e-86
Identities = 161/205 (78%), Positives = 172/205 (83%), Gaps = 2/205 (0%)
Query: 202 IVEALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQNFSMS 261
IVE L KK GC+S D D +P +E+++ K+NE+ D + + PGLPPQNFSMS
Sbjct: 84 IVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRG--PPGLPPQNFSMS 141
Query: 262 VTVPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSPPQTILHRNVSPGAPQRPPSTG 321
VTVPV SPNALSYTNPGSSLVSPSLAASSTLTD + LSPPQT LHRNVSPGAPQRPPSTG
Sbjct: 142 VTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTG 201
Query: 322 NAGGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGSN 381
NAGGML TTDLTVPNG GSSPVGN FVNSRASPNLIGATGANSLGKVMPTKSPPPPGG N
Sbjct: 202 NAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGN 261
Query: 382 LGMNSGKPDLRVVIPASSKGMTPPL 406
LGMNS KPDLRVVIP SSKGM PPL
Sbjct: 262 LGMNSRKPDLRVVIPPSSKGMMPPL 286
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 315 bits (808), Expect = 4e-86
Identities = 160/220 (72%), Positives = 179/220 (81%), Gaps = 2/220 (0%)
Query: 204 EALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQNFSMSVT 263
+ L KK GC+S D D +P +E+++ K+NE+ D + + PGLPPQNFSMSVT
Sbjct: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRG--PPGLPPQNFSMSVT 75
Query: 264 VPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSPPQTILHRNVSPGAPQRPPSTGNA 323
VPV SPNALSYTNPGSSLVSPSLAASSTLTD + LSPPQT LHRNVSPGAPQRPPSTGNA
Sbjct: 76 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA 135
Query: 324 GGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGSNLG 383
GGML TTDLTVPNG GSSPVGN FVNSRASPNLIGATGANSLGKVMPTKSPPPPGG NLG
Sbjct: 136 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 195
Query: 384 MNSGKPDLRVVIPASSKGMTPPLELKSERKRESSILSTNE 423
MNS KPDLRVVIP SSKGM PPL + E + + +S+++
Sbjct: 196 MNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQ 235
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 312 bits (800), Expect = 3e-85
Identities = 158/203 (77%), Positives = 170/203 (83%), Gaps = 2/203 (0%)
Query: 204 EALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQNFSMSVT 263
+ L KK GC+S D D +P +E+++ K+NE+ D + + PGLPPQNFSMSVT
Sbjct: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRG--PPGLPPQNFSMSVT 75
Query: 264 VPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSPPQTILHRNVSPGAPQRPPSTGNA 323
VPV SPNALSYTNPGSSLVSPSLAASSTLTD + LSPPQT LHRNVSPGAPQRPPSTGNA
Sbjct: 76 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA 135
Query: 324 GGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGSNLG 383
GGML TTDLTVPNG GSSPVGN FVNSRASPNLIGATGANSLGKVMPTKSPPPPGG NLG
Sbjct: 136 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 195
Query: 384 MNSGKPDLRVVIPASSKGMTPPL 406
MNS KPDLRVVIP SSKGM PPL
Sbjct: 196 MNSRKPDLRVVIPPSSKGMMPPL 218
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 254 bits (648), Expect = 1e-67
Identities = 114/128 (89%), Positives = 118/128 (92%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSF 105
G GDGYNGFGNDGGYGGGGPGYSGGSRGYGS GQGYG+QGSGYGGSGSY+SYNNGGGG F
Sbjct: 239 GSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGF 298
Query: 106 GGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYG 165
GGGSGS+FGG GSYNDFGNYNNQSSNFGP KGGNFGGRSS P GGGGQYF KP+NQGGYG
Sbjct: 299 GGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGYG 358
Query: 166 GSSSSRHY 173
GSSSS Y
Sbjct: 359 GSSSSSSY 366
Score = 52.0 bits (123), Expect = 1e-06
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 91 SGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGG 150
S S + G G+FGGG G FGG+ ++ GN++ + G GG +GG G
Sbjct: 188 SASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF 247
Query: 151 GGQYFVKPQNQGGYGG-----SSSSRHY 173
G N GGYGG S SR Y
Sbjct: 248 G--------NDGGYGGGGPGYSGGSRGY 267
Score = 35.8 bits (81), Expect = 0.078
Identities = 15/19 (78%), Positives = 18/19 (94%)
Query: 28 LSNSESPKEPKQLRKLFLG 46
+S SESPKEP+QLRKLF+G
Sbjct: 1 MSKSESPKEPEQLRKLFIG 19
>gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens]
Length = 463
Score = 188 bits (478), Expect = 7e-48
Identities = 110/220 (50%), Positives = 144/220 (65%), Gaps = 20/220 (9%)
Query: 202 IVEALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQNFSMS 261
IVEALNKKE++GC+S DPD+S LTP TEEKYKKINEEFDNM+++H I P +PP NF M
Sbjct: 84 IVEALNKKENKGCESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHKI-PAVPPPNFEMP 142
Query: 262 VTVPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSPPQTILHRNVSPGAPQRPPSTG 321
V++PV S N+L Y+NP SSL +P+L L+ P ++ ++SPG RPPS G
Sbjct: 143 VSIPVSSHNSLVYSNPVSSLGNPNLL---------PLAHP-SLQRNSMSPGVTHRPPSAG 192
Query: 322 NAGGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGSN 381
N GG++G DLT +G G+S GN + N R SP L+ + G +L K M KSPPP N
Sbjct: 193 NTGGLMG-GDLT--SGAGTS-AGNGYGNPRNSPGLLVSPG--NLNKNMQAKSPPP---MN 243
Query: 382 LGMNSGKPDLRVVIPASSKGMTPPLELKSERKRESSILST 421
LGMN+ KPDLRV+IP SK P + + + + L+T
Sbjct: 244 LGMNNRKPDLRVLIPPGSKNTMPSVNQRINNSQSAQSLAT 283
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 172 bits (435), Expect = 7e-43
Identities = 103/207 (49%), Positives = 129/207 (62%), Gaps = 11/207 (5%)
Query: 200 AYIVEALNKKEHRGCDSSDPD--TSCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQN 257
A I+E L KK GCDS +PD S +P E+KY++ +EE D + + + +P N
Sbjct: 82 ADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGST--VPAPN 139
Query: 258 FSMSVTVPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSPPQTILHRN-VSPGAPQR 316
F+M VTVPV + ++L ++NP SLV+PSL SS LTD LSP Q L RN VSPG PQR
Sbjct: 140 FAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSS-LTDPRLLSPQQPALQRNSVSPGLPQR 198
Query: 317 PPSTGNAGGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGKVMPTKSPPP 376
P S AG MLG DL NG SPVGN +V++RASP L+ NSL KV+P KSPPP
Sbjct: 199 PAS---AGAMLGG-DLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPP 254
Query: 377 PGGS-NLGMNSGKPDLRVVIPASSKGM 402
P S LG S KPDLRV+ + KG+
Sbjct: 255 PTHSTQLGAPSRKPDLRVITSQAGKGL 281
>gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens]
Length = 473
Score = 149 bits (377), Expect = 4e-36
Identities = 95/205 (46%), Positives = 124/205 (60%), Gaps = 22/205 (10%)
Query: 202 IVEALNKKEHRGCDSSDPDT--SCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQNFS 259
IVE L KK GCDS DPD S +P +E+KY+KINE+ D M+ + +PP NF
Sbjct: 84 IVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQRLC-AVPPPNFE 142
Query: 260 MSVTVPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSPPQTILHRNVSPGAPQRPPS 319
M V++PV S N+L Y+NP SSL +P+L L+ P ++ ++SPG RPPS
Sbjct: 143 MPVSIPVSSHNSLVYSNPVSSLGNPNLL---------PLAHP-SLQRNSMSPGVTHRPPS 192
Query: 320 TGNAGGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGKVMPTKSPPPPGG 379
GN GG++G DLT +G G+S GN + N R SP L+ + G +L K M KSPPP
Sbjct: 193 AGNTGGLMG-GDLT--SGAGTS-AGNGYGNPRNSPGLLVSPG--NLNKNMQAKSPPP--- 243
Query: 380 SNLGMNSGKPDLRVVIPASSKGMTP 404
NLGMN+ KPDLRV+IP SK P
Sbjct: 244 MNLGMNNRKPDLRVLIPPGSKNTMP 268
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 149 bits (377), Expect = 4e-36
Identities = 80/131 (61%), Positives = 86/131 (65%), Gaps = 24/131 (18%)
Query: 46 GRGDGYNG---FGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGG 102
GRG G+ G FG G + G G G+ GGSRG G GYG G GY G G+
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRG-GF-GGSRG----GGGYGGSGDGYNGFGN--------- 249
Query: 103 GSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQG 162
GS+FGG GSYNDFGNYNNQSSNFGP KGGNFGGRSS P GGGGQYF KP+NQG
Sbjct: 250 ------DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQG 303
Query: 163 GYGGSSSSRHY 173
GYGGSSSS Y
Sbjct: 304 GYGGSSSSSSY 314
Score = 35.8 bits (81), Expect = 0.078
Identities = 15/19 (78%), Positives = 18/19 (94%)
Query: 28 LSNSESPKEPKQLRKLFLG 46
+S SESPKEP+QLRKLF+G
Sbjct: 1 MSKSESPKEPEQLRKLFIG 19
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 147 bits (371), Expect = 2e-35
Identities = 80/131 (61%), Positives = 85/131 (64%), Gaps = 24/131 (18%)
Query: 46 GRGDGYNG---FGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGG 102
GRGDG+ G FG G + G G G+ GGS G G GYG G GY G G+
Sbjct: 205 GRGDGFGGNDNFGRGGNFSGRG-GF-GGSCG----GGGYGGSGDGYNGFGN--------- 249
Query: 103 GSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQG 162
GS+FGG GSYNDFGNYNNQSSNFGP KGGNFGGRSS P GGGGQYF KPQNQG
Sbjct: 250 ------DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQG 303
Query: 163 GYGGSSSSRHY 173
GYG SSSS Y
Sbjct: 304 GYGVSSSSSSY 314
Score = 33.5 bits (75), Expect = 0.39
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 28 LSNSESPKEPKQLRKLFLG 46
+S S SPKEP+QLRKLF+G
Sbjct: 1 MSKSASPKEPEQLRKLFIG 19
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 147 bits (371), Expect = 2e-35
Identities = 80/131 (61%), Positives = 85/131 (64%), Gaps = 24/131 (18%)
Query: 46 GRGDGYNG---FGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGG 102
GRGDG+ G FG G + G G G+ GGS G G GYG G GY G G+
Sbjct: 205 GRGDGFGGNDNFGRGGNFSGRG-GF-GGSCG----GGGYGGSGDGYNGFGN--------- 249
Query: 103 GSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQG 162
GS+FGG GSYNDFGNYNNQSSNFGP KGGNFGGRSS P GGGGQYF KPQNQG
Sbjct: 250 ------DGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPQNQG 303
Query: 163 GYGGSSSSRHY 173
GYG SSSS Y
Sbjct: 304 GYGVSSSSSSY 314
Score = 33.5 bits (75), Expect = 0.39
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 28 LSNSESPKEPKQLRKLFLG 46
+S S SPKEP+QLRKLF+G
Sbjct: 1 MSKSASPKEPEQLRKLFIG 19
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 138 bits (347), Expect = 1e-32
Identities = 74/123 (60%), Positives = 84/123 (68%), Gaps = 12/123 (9%)
Query: 46 GRGDG-YNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGS 104
G GDG YNGFG DGG GGGPGYS GYG G GYG+QG GYGG G Y+ YN GG +
Sbjct: 261 GGGDGGYNGFGGDGGNYGGGPGYSSRG-GYGGGGPGYGNQGGGYGGGGGYDGYNEGG--N 317
Query: 105 FGGGSGSSFGGSGSYNDFGNYN-NQSSNFGPTKGGNFGGRSS-VPCGGGGQYFVKPQNQG 162
FGGG+ +GG G+YNDFGNY+ Q SN+GP KGG+FGGRSS P GGG + G
Sbjct: 318 FGGGN---YGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGG---YGSGGGSG 371
Query: 163 GYG 165
GYG
Sbjct: 372 GYG 374
Score = 58.9 bits (141), Expect = 9e-09
Identities = 39/112 (34%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 68 SGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNN 127
+G RG G + +G +GG G N G GG+FGG G GG GS +G +
Sbjct: 210 AGSQRGRGGGSGNFMGRGGNFGGGGG----NFGRGGNFGGRGGYGGGGGGSRGSYGGGDG 265
Query: 128 QSSNFGPTKGGNFGG----RSSVPCGGGGQYFVKPQNQGGYGGSSSSRHYQD 175
+ FG GGN+GG S GGGG + GGYGG Y +
Sbjct: 266 GYNGFG-GDGGNYGGGPGYSSRGGYGGGGPGY--GNQGGGYGGGGGYDGYNE 314
>gi|169203146 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 132 bits (333), Expect = 5e-31
Identities = 71/124 (57%), Positives = 78/124 (62%), Gaps = 13/124 (10%)
Query: 52 NGFGNDGGYGGGGPGYSGGSR-GYGSVGQGYGSQGSGYGGSGS-YNSYNNGGGGSFGGGS 109
+G GN GG G G G+SG G+G G G G +GGS YN + N
Sbjct: 197 SGSGNFGG--GRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNGFGN---------D 245
Query: 110 GSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSS 169
G +FGG SYNDFGN NNQSSNFGP KGGNFGG+ S GGGGQYF KPQNQGGYGGSSS
Sbjct: 246 GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSS 305
Query: 170 SRHY 173
S Y
Sbjct: 306 SSSY 309
Score = 56.2 bits (134), Expect = 6e-08
Identities = 36/87 (41%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGY------SGGSRGYGSV--GQGYGSQGSGYGGSGSYNSY 97
G DGYNGFGNDG GGG Y + S +G + G G + YGG G Y +
Sbjct: 234 GSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAK 293
Query: 98 NNGGGGSFGGGSGSSFGGSGSYNDFGN 124
GG +GG S SS GSG GN
Sbjct: 294 PQNQGG-YGGSSSSSSYGSGRRFQLGN 319
Score = 37.4 bits (85), Expect = 0.027
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 28 LSNSESPKEPKQLRKLFLG 46
+S SESPKEPKQLRKLF+G
Sbjct: 1 MSKSESPKEPKQLRKLFIG 19
>gi|89035135 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 132 bits (332), Expect = 6e-31
Identities = 71/124 (57%), Positives = 78/124 (62%), Gaps = 13/124 (10%)
Query: 52 NGFGNDGGYGGGGPGYSGGSR-GYGSVGQGYGSQGSGYGGSGS-YNSYNNGGGGSFGGGS 109
+G GN GG G G G+SG G+G G G G +GGS YN + N
Sbjct: 197 SGSGNFGG--GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGN---------D 245
Query: 110 GSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSS 169
G +FGG SYNDFGN NNQSSNFGP KGGNFGG+ S GGGGQYF KPQNQGGYGGSSS
Sbjct: 246 GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSS 305
Query: 170 SRHY 173
S Y
Sbjct: 306 SSSY 309
Score = 56.2 bits (134), Expect = 6e-08
Identities = 36/87 (41%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGY------SGGSRGYGSV--GQGYGSQGSGYGGSGSYNSY 97
G DGYNGFGNDG GGG Y + S +G + G G + YGG G Y +
Sbjct: 234 GSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAK 293
Query: 98 NNGGGGSFGGGSGSSFGGSGSYNDFGN 124
GG +GG S SS GSG GN
Sbjct: 294 PQNQGG-YGGSSSSSSYGSGRRFQLGN 319
Score = 37.4 bits (85), Expect = 0.027
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 28 LSNSESPKEPKQLRKLFLG 46
+S SESPKEPKQLRKLF+G
Sbjct: 1 MSKSESPKEPKQLRKLFIG 19
>gi|89034333 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein A1-like [Homo sapiens]
Length = 321
Score = 132 bits (332), Expect = 6e-31
Identities = 71/124 (57%), Positives = 78/124 (62%), Gaps = 13/124 (10%)
Query: 52 NGFGNDGGYGGGGPGYSGGSR-GYGSVGQGYGSQGSGYGGSGS-YNSYNNGGGGSFGGGS 109
+G GN GG G G G+SG G+G G G G +GGS YN + N
Sbjct: 197 SGSGNFGG--GRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNGFGN---------D 245
Query: 110 GSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSS 169
G +FGG SYNDFGN NNQSSNFGP KGGNFGG+ S GGGGQYF KPQNQGGYGGSSS
Sbjct: 246 GKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAKPQNQGGYGGSSS 305
Query: 170 SRHY 173
S Y
Sbjct: 306 SSSY 309
Score = 56.2 bits (134), Expect = 6e-08
Identities = 36/87 (41%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGY------SGGSRGYGSV--GQGYGSQGSGYGGSGSYNSY 97
G DGYNGFGNDG GGG Y + S +G + G G + YGG G Y +
Sbjct: 234 GSADGYNGFGNDGKNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYFAK 293
Query: 98 NNGGGGSFGGGSGSSFGGSGSYNDFGN 124
GG +GG S SS GSG GN
Sbjct: 294 PQNQGG-YGGSSSSSSYGSGRRFQLGN 319
Score = 37.4 bits (85), Expect = 0.027
Identities = 16/19 (84%), Positives = 18/19 (94%)
Query: 28 LSNSESPKEPKQLRKLFLG 46
+S SESPKEPKQLRKLF+G
Sbjct: 1 MSKSESPKEPKQLRKLFIG 19
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 126 bits (316), Expect = 4e-29
Identities = 67/127 (52%), Positives = 76/127 (59%), Gaps = 18/127 (14%)
Query: 46 GRGDGYNGFGNDGGYG--GGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGG 103
G GDGYNG+G G G GG PGY GG GYG G GYG+QG GYGG Y+N GGG
Sbjct: 239 GFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG-----YDNYGGG 293
Query: 104 SFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSV--PCGGGGQYFVKPQNQ 161
++G SG+YNDFGNYN Q SN+GP K GNFGG ++ P GGG
Sbjct: 294 NYG---------SGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGS 344
Query: 162 GGYGGSS 168
GGYGG S
Sbjct: 345 GGYGGRS 351
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 126 bits (316), Expect = 4e-29
Identities = 67/127 (52%), Positives = 76/127 (59%), Gaps = 18/127 (14%)
Query: 46 GRGDGYNGFGNDGGYG--GGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGG 103
G GDGYNG+G G G GG PGY GG GYG G GYG+QG GYGG Y+N GGG
Sbjct: 227 GFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG-----YDNYGGG 281
Query: 104 SFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSV--PCGGGGQYFVKPQNQ 161
++G SG+YNDFGNYN Q SN+GP K GNFGG ++ P GGG
Sbjct: 282 NYG---------SGNYNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGS 332
Query: 162 GGYGGSS 168
GGYGG S
Sbjct: 333 GGYGGRS 339
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 88.2 bits (217), Expect = 1e-17
Identities = 55/139 (39%), Positives = 63/139 (45%), Gaps = 21/139 (15%)
Query: 46 GRGDGYNGFGNDGGYGGG-------GPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYN 98
G G Y G G+ GGYGGG G Y GGS G G GYG G GS ++
Sbjct: 492 GSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHS 551
Query: 99 NGGGGSFGGGSGSS-------FGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGG 151
G GG++GGGSGS GGSGS G + S FG GG++GG GG
Sbjct: 552 GGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGG 611
Query: 152 GQYFVKPQNQGGYGGSSSS 170
G GG G SS S
Sbjct: 612 GY-------GGGSGKSSHS 623
Score = 80.5 bits (197), Expect = 3e-15
Identities = 50/119 (42%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 50 GYNGFGNDGG-YGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGG 108
G G G GG YG G G SGGS G G G GYG GGSG +G GG GGG
Sbjct: 474 GLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGG 533
Query: 109 SGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGS 167
G GG S G ++ S GGN+GG S G GG Y ++GG GGS
Sbjct: 534 YGGGSGGGHSGGSGGGHSGGS-------GGNYGGGSGSGGGSGGGYGGGSGSRGGSGGS 585
Score = 73.9 bits (180), Expect = 3e-13
Identities = 55/129 (42%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 48 GDGYNGFGNDGGYGGGGPG--YSGGSRGYGSVGQGYGSQGSGYG-GSGSYNSYNNGGGGS 104
G G G G+ G YGGGG G Y GGS GS G GS G G G G GS Y G GG
Sbjct: 486 GRGSRG-GSGGSYGGGGSGGGYGGGS---GSRGGSGGSYGGGSGSGGGSGGGYGGGSGGG 541
Query: 105 FGGGSGSSF-GGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGG 163
GGSG GGSG GNY S + G GG +GG S G GG + G
Sbjct: 542 HSGGSGGGHSGGSG-----GNYGGGSGS-GGGSGGGYGGGSGSRGGSGGSH----GGGSG 591
Query: 164 YGGSSSSRH 172
+GG S +
Sbjct: 592 FGGESGGSY 600
Score = 67.4 bits (163), Expect = 2e-11
Identities = 43/105 (40%), Positives = 50/105 (47%), Gaps = 27/105 (25%)
Query: 46 GRGDGYN-GFGNDGGYGGG------GPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNS-Y 97
GRG G + G+ GG GGG G G+ GGSRG+G G+ G GY SG + +
Sbjct: 62 GRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFG------GASGGGYSSSGGFGGGF 115
Query: 98 NNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGG 142
G GG FGGG GS FGG G FG GG GG
Sbjct: 116 GGGSGGGFGGGYGSGFGGFG-------------GFGGGAGGGDGG 147
Score = 65.1 bits (157), Expect = 1e-10
Identities = 54/143 (37%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 38 KQLRKLFLGRGDGYNGFGNDGGYGGGGP---GYSGGSRGYGSVGQGYGSQGSGYGGSGSY 94
+Q +L R G G GG G GG YS S G G G S SGYGG GS
Sbjct: 4 RQFSSSYLSRSGG----GGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGG-GSS 58
Query: 95 NSYNNGGGGSF----GGGSGSSFGGSGSYNDFGNYN---NQSSNFGPTKGGNFGGRSSVP 147
GGGGSF GGGSG F S FG + +S G + G FGG
Sbjct: 59 RVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGG 118
Query: 148 CGG--GGQYFVKPQNQGGYGGSS 168
GG GG Y GG+GG +
Sbjct: 119 SGGGFGGGYGSGFGGFGGFGGGA 141
Score = 60.5 bits (145), Expect = 3e-09
Identities = 48/127 (37%), Positives = 56/127 (44%), Gaps = 26/127 (20%)
Query: 51 YNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYN-SYNNGGGGSFG--- 106
Y+ F + GG GGGG S S GYG G S+ G GG GS+ SY G GG F
Sbjct: 32 YSRFSSSGGGGGGGRFSS--SSGYG----GGSSRVCGRGGGGSFGYSYGGGSGGGFSASS 85
Query: 107 -----GGSGSSFGGS--GSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQ 159
GG FGG+ G Y+ G + FG GG FGG GG G +
Sbjct: 86 LGGGFGGGSRGFGGASGGGYSSSGGF---GGGFGGGSGGGFGGGYGSGFGGFGGF----- 137
Query: 160 NQGGYGG 166
GG GG
Sbjct: 138 -GGGAGG 143
Score = 52.0 bits (123), Expect = 1e-06
Identities = 42/109 (38%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 69 GGSRGYGSVGQGYGSQGSGYGG----SGSYNSYNNGG-GGSF-GGGSGSSF-GGSGSYND 121
GG + S G G G GG GSY + GG GGS+ GGGSG + GGSGS
Sbjct: 460 GGQEDFESSGAGK----IGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGG 515
Query: 122 FGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSS 170
G S G GG +GG S GG + G YGG S S
Sbjct: 516 SGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGS 564
Score = 46.6 bits (109), Expect = 4e-05
Identities = 33/81 (40%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 46 GRGDGYNGFG--NDGGY---GGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNG 100
G G G GFG + GGY GG G G+ GGS G G GYGS G+GG
Sbjct: 89 GFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGG--GFGGGYGSGFGGFGG---------- 136
Query: 101 GGGSFGGGSGSSFGGSGSYND 121
FGGG+G GG + N+
Sbjct: 137 ----FGGGAGGGDGGILTANE 153
Score = 40.4 bits (93), Expect = 0.003
Identities = 36/87 (41%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 91 SGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNF------GGRS 144
S SY S + GGGG G GSG S S Y+ SS+ G GG F GG S
Sbjct: 7 SSSYLSRSGGGGGG-GLGSGGSIRSS--------YSRFSSSGGGGGGGRFSSSSGYGGGS 57
Query: 145 SVPCG-GGGQYFVKPQNQGGYGGSSSS 170
S CG GGG F G GG S+S
Sbjct: 58 SRVCGRGGGGSFGYSYGGGSGGGFSAS 84
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 85.1 bits (209), Expect = 1e-16
Identities = 53/123 (43%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 59 GYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNN---GGGGSF----GGGSGS 111
G GGGG S G RG G G G GG G YNSY GGGG + GGG GS
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGS 241
Query: 112 SFGGS---GSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGG---GGQYFVKPQNQGGYG 165
S+GGS + FG+Y+ S++GP K G GG GG G Y GGYG
Sbjct: 242 SYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYG 301
Query: 166 GSS 168
GSS
Sbjct: 302 GSS 304
Score = 56.6 bits (135), Expect = 4e-08
Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 86 SGYGGSGSYNSYNNGGGGSFGGG---SGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGG 142
SG GG GS +S GG GGG +G S GG G YN +G Y GG GG
Sbjct: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYG----------GGGGGG 230
Query: 143 RSSVPCGGGGQYFVKPQNQGGYGGSSSSRHYQDVLASPKLKEAAPGSAERW 193
++ GGGG + G+GG S +Q K G W
Sbjct: 231 YNAYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSW 281
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 83.2 bits (204), Expect = 4e-16
Identities = 60/126 (47%), Positives = 69/126 (54%), Gaps = 20/126 (15%)
Query: 48 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGS--GSYNSYNNGGGGSF 105
G+G +G G GG G G GY GGS G GS G G+G G+GGS G Y ++GGG S
Sbjct: 455 GEGSSGGGGRGG-GSFGGGYGGGSSGGGSSGGGHGG---GHGGSSGGGYGGGSSGGGSSG 510
Query: 106 GG-GSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGY 164
GG G GSS GG G + G Y SS G GG +GG SS GGG + GGY
Sbjct: 511 GGYGGGSSSGGHGG-SSSGGYGGGSSGGG---GGGYGGGSS---GGGS------SSGGGY 557
Query: 165 GGSSSS 170
GG SSS
Sbjct: 558 GGGSSS 563
Score = 79.7 bits (195), Expect = 5e-15
Identities = 54/124 (43%), Positives = 60/124 (48%), Gaps = 16/124 (12%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSF 105
G G G +G G+ GG GGG G S G GYG G GS G GYGG S + GG S
Sbjct: 472 GYGGGSSGGGSSGGGHGGGHGGSSGG-GYGGGSSGGGSSGGGYGGGSSSGGH---GGSSS 527
Query: 106 GGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYG 165
GG G S GG G G Y SS G + GG +GG SS GG K + G G
Sbjct: 528 GGYGGGSSGGGG-----GGYGGGSSGGGSSSGGGYGGGSS----SGGH---KSSSSGSVG 575
Query: 166 GSSS 169
SSS
Sbjct: 576 ESSS 579
Score = 68.2 bits (165), Expect = 1e-11
Identities = 65/216 (30%), Positives = 87/216 (40%), Gaps = 35/216 (16%)
Query: 46 GRGDGYNGFGNDGGYG-----------GGG---PGYSGGSRGYGSVGQG-YGSQGSGYGG 90
G G G G G GG GGG G+SGGS GS G G +G GYGG
Sbjct: 17 GGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGYGG 76
Query: 91 SGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGG 150
G + GGGSF G GSS G GSY G++ S G GG+FGG G
Sbjct: 77 LGGF------GGGSFRGSYGSSSFG-GSYG--GSFGGGSFGGGSFGGGSFGGGGFGGGGF 127
Query: 151 GGQYFVKPQNQGGYGGSSSSRHYQDVLASPKLKEAAPGSAERWRRAQAAAYIVEALNKKE 210
GG + GG+GG + + L + ++ R + + Y +E K+
Sbjct: 128 GGGF------GGGFGGDGGLLSGNEKVTMQNLNDRLASYLDKVRALEESNYELEGKIKEW 181
Query: 211 HRGCDSSDPDTSCVLTPYTEEKYKKINEEFDNMMQN 246
+ +S P KY K ++ N + N
Sbjct: 182 YEKHGNSHQG-----EPRDYSKYYKTIDDLKNQILN 212
Score = 64.7 bits (156), Expect = 2e-10
Identities = 49/119 (41%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 52 NGFGNDGGYGGGGPGYSG--GSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGS 109
+G G GG GGG G S S GS+G G+ S G SG S + GGG FGG S
Sbjct: 16 SGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGF----SGGSFSRGSSGGGCFGGSS 71
Query: 110 G--SSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGG 166
G GG G + G+Y SS+FG + GG+FGG S GGG + GG+GG
Sbjct: 72 GGYGGLGGFGGGSFRGSYG--SSSFGGSYGGSFGGGSF----GGGSFGGGSFGGGGFGG 124
Score = 62.4 bits (150), Expect = 8e-10
Identities = 40/96 (41%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 74 YGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFG 133
Y S+ +G GS G G G GS+ GGG S GG SG GG + G Y SS G
Sbjct: 449 YRSLLEGEGSSGGGGRGGGSFGG-GYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGG 507
Query: 134 PTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSS 169
+ GG GG SS GG + GGYGG SS
Sbjct: 508 SSGGGYGGGSSSGGHGG--------SSSGGYGGGSS 535
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/80 (42%), Positives = 37/80 (46%), Gaps = 12/80 (15%)
Query: 48 GDGYNGFGNDGGYGGGGPG-YSGGSRGYGSVGQGYGSQGSG---YGGSGSYNSYNNGGGG 103
G GY G + GG+GG G Y GGS G G G G GS G G GG GGG
Sbjct: 510 GGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSGGG--------YGGGS 561
Query: 104 SFGGGSGSSFGGSGSYNDFG 123
S GG SS G G + G
Sbjct: 562 SSGGHKSSSSGSVGESSSKG 581
Score = 50.4 bits (119), Expect = 3e-06
Identities = 46/127 (36%), Positives = 55/127 (43%), Gaps = 30/127 (23%)
Query: 51 YNGFGNDGGYGGGGPGYSGG------SRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGS 104
Y+ + GG GGGG G GG S GS+G G+ S G GGS S S GGG
Sbjct: 11 YSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFS-GGSFSRGS---SGGGC 66
Query: 105 FGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNF-GGRSSVPCGG--GGQYFVKPQNQ 161
FGG SG +GG G + GG+F G S GG GG +
Sbjct: 67 FGGSSGG-YGGLGGFG----------------GGSFRGSYGSSSFGGSYGGSFGGGSFGG 109
Query: 162 GGYGGSS 168
G +GG S
Sbjct: 110 GSFGGGS 116
Score = 45.8 bits (107), Expect = 8e-05
Identities = 32/81 (39%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 93 SYNSYNNGGGGSFGGG-SGSSFG---GSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPC 148
+Y S G G S GGG G SFG G GS + G + GG +GG SS
Sbjct: 448 TYRSLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGG 507
Query: 149 GGGGQYFVKPQNQGGYGGSSS 169
GG Y + GG+GGSSS
Sbjct: 508 SSGGGY-GGGSSSGGHGGSSS 527
Score = 44.7 bits (104), Expect = 2e-04
Identities = 36/104 (34%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 71 SRGYGSVGQGYGSQGSGYGGSGSYNSYN-NGGGGSFGGGSGSSFGGSGSYNDFGNYNNQS 129
S+ Y S G G G G GG G +S + GS GGG S G ++ S
Sbjct: 8 SKHYSSSRSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSS-----------GGFSGGS 56
Query: 130 SNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSSRHY 173
+ G + GG FGG S G GG F +G YG SS Y
Sbjct: 57 FSRGSSGGGCFGGSSGGYGGLGG--FGGGSFRGSYGSSSFGGSY 98
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 79.3 bits (194), Expect = 6e-15
Identities = 55/131 (41%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Query: 44 FLGRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGG 103
F G G G G+ GY GGG GYSGG G GS G G G G GG + +GGGG
Sbjct: 37 FGGGGSGGGSSGSGCGYSGGG-GYSGGGCGGGSSGGGGGGGIGGCGGGSGGSVKYSGGGG 95
Query: 104 SFGGGSG---SSFGGSGSYND--FGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKP 158
S GGGSG S GGSG ++ G+ S F GG+ GG S GGG + +
Sbjct: 96 SSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQA 155
Query: 159 QNQGGYGGSSS 169
YGG SS
Sbjct: 156 VQCQSYGGVSS 166
Score = 72.8 bits (177), Expect = 6e-13
Identities = 53/132 (40%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 46 GRGDGYNGFGNDGG----YGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGS--GSYNSYNN 99
G G G G G G Y GGG GGS + S G G G SG GGS G +++
Sbjct: 72 GGGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSS 131
Query: 100 GGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQ 159
GGGGS GGGSG G G ++ G S G + GG+ GG S GGG V
Sbjct: 132 GGGGSSGGGSGCFSSGGGGFS--GQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGGSVCGY 189
Query: 160 NQGGYG-GSSSS 170
+ GG G G SS
Sbjct: 190 SGGGSGCGGGSS 201
Score = 70.1 bits (170), Expect = 4e-12
Identities = 50/120 (41%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 53 GFGNDGGYGGGGPGY-SGGSRGYGSVGQGYG-SQGSGYGGSGSYNSYNNGGGGSFGGGSG 110
G G GG GGGG G+ GG G GS G G G S G GY G G + GGGG GG G
Sbjct: 22 GGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGGGGGIGGCG 81
Query: 111 SSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSS 170
GGS Y+ G + S + GG G SS GGGG + GG G SS
Sbjct: 82 GGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSS---GGGG-------SSGGGSGCFSS 131
Score = 64.7 bits (156), Expect = 2e-10
Identities = 45/113 (39%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 59 GYGGGGPGYSGGSRG-YGSVGQGYGSQGSGYGGSGSYNSYNNG--GGGSFGGGSGSSFGG 115
G GGGG G GG G +G G G GS GSG G SG Y+ G GGGS GGG G GG
Sbjct: 21 GGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGG-GGYSGGGCGGGSSGGGGGGGIGG 79
Query: 116 SGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSS 168
G + S + G + GG GGGG G GG S
Sbjct: 80 C------GGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGS 126
Score = 62.8 bits (151), Expect = 6e-10
Identities = 50/137 (36%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSG-----------SY 94
G G +G + GG GG GYSGG G G G G GSGY S SY
Sbjct: 168 GSSGGGSGCFSSGGGGGSVCGYSGGGSGCG--GGSSGGSGSGYVSSQQVTQTSCAPQPSY 225
Query: 95 NSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQY 154
++GGGGS G G SS GG GS G + S + GG+ G S GGGG
Sbjct: 226 GGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGG-- 283
Query: 155 FVKPQNQGGYGGSSSSR 171
GGS S +
Sbjct: 284 -------SSVGGSGSGK 293
Score = 61.6 bits (148), Expect = 1e-09
Identities = 47/134 (35%), Positives = 55/134 (41%), Gaps = 20/134 (14%)
Query: 48 GDGYNGFGNDGGYGGGGPGYSGGS---RGYGSVGQGYGSQGSGYG------GSGSYNSYN 98
G G + G G + GG G+SG + + YG V G GS G G G G GS Y+
Sbjct: 132 GGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSG-GSSGGGSGCFSSGGGGGSVCGYS 190
Query: 99 NGG---GGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYF 155
GG GG GGSGS + S S G + GG GG GGGG
Sbjct: 191 GGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGGSGCFSSGGGG--- 247
Query: 156 VKPQNQGGYGGSSS 169
G GG SS
Sbjct: 248 ----GSSGCGGGSS 257
Score = 58.2 bits (139), Expect = 1e-08
Identities = 50/142 (35%), Positives = 61/142 (42%), Gaps = 22/142 (15%)
Query: 44 FLGRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQ-------------GSGYGG 90
F G G +G G+ GGG GGS + S G G+ Q GS GG
Sbjct: 114 FSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGG 173
Query: 91 SGSYNSYNNGGGGSF----GGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSV 146
SG ++S GGGGS GGGSG G SG + Q + ++GG SS
Sbjct: 174 SGCFSS--GGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSS- 230
Query: 147 PCGGGGQYFVKPQNQGGYGGSS 168
GGGG + GG GGSS
Sbjct: 231 --GGGGSGGSGCFSSGGGGGSS 250
Score = 50.8 bits (120), Expect = 2e-06
Identities = 37/90 (41%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 83 SQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGS---YNDFGNYNNQSSNFGPTKGGN 139
+ G G GG GS GG G FGGG GS G SGS Y+ G Y+ G + GG
Sbjct: 19 TSGGGGGGGGS----GGGGCGFFGGG-GSGGGSSGSGCGYSGGGGYSGGGCGGGSSGGGG 73
Query: 140 FGGRSSVPCGGGGQYFVKPQNQGGYGGSSS 169
GG CGGG VK GG G S
Sbjct: 74 GGGIGG--CGGGSGGSVKYSGGGGSSGGGS 101
Score = 49.7 bits (117), Expect = 5e-06
Identities = 33/69 (47%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 53 GFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYG----GSGSY---NSYNNGGGGSF 105
G G+ GG G GG G G GS G G GS G G G G GS S GGGGS
Sbjct: 226 GGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSS 285
Query: 106 GGGSGSSFG 114
GGSGS G
Sbjct: 286 VGGSGSGKG 294
Score = 35.8 bits (81), Expect = 0.078
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYG 89
G G G +G G+ GGG GGS G G G G GSG G
Sbjct: 251 GCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKG 294
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 78.6 bits (192), Expect = 1e-14
Identities = 54/160 (33%), Positives = 69/160 (43%), Gaps = 14/160 (8%)
Query: 19 IKVSLLPAVLSNSESPKEPKQLRKLFLGRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVG 78
++++ +L ES + + + + G GGGG GY G YGS G
Sbjct: 477 LEIATYRTLLEGEESRMSGECAPNVSVSVSTSHTTISGGGSRGGGGGGYGSGGSSYGSGG 536
Query: 79 QGYGSQGSGYGGSGSYNSYNNG------GGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNF 132
GS GSG GG G SY +G GGGS+G G G GG GSY +
Sbjct: 537 ---GSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGG--GGHGSYGSGSSSGGYRGGS 591
Query: 133 GPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGY---GGSSS 169
G GG+ GGR S GG + + GG GGSSS
Sbjct: 592 GGGGGGSSGGRGSGGGSSGGSIGGRGSSSGGVKSSGGSSS 631
Score = 75.1 bits (183), Expect = 1e-13
Identities = 48/111 (43%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGY---GGSGSYNSYNNGG- 101
G G G + +G+ GG G G G GG YGS G YGS G Y GG G + SY +G
Sbjct: 524 GYGSGGSSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSS 583
Query: 102 -----GGSFGGGSGSSFG-GSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSV 146
GGS GGG GSS G GSG + G+ + S+ G K GG SSV
Sbjct: 584 SGGYRGGSGGGGGGSSGGRGSGGGSSGGSIGGRGSSSGGVKSS--GGSSSV 632
Score = 59.3 bits (142), Expect = 7e-09
Identities = 51/138 (36%), Positives = 58/138 (42%), Gaps = 28/138 (20%)
Query: 52 NGFGNDGGYGGGGPGY--------------SGGSRG-YGSVGQGYGSQGSGYGGSGSYNS 96
+G+ + GG+ G G SGG G + S G G GS G+G GG GS +
Sbjct: 9 SGYRSGGGFSSGSAGIINYQRRTTSSSTRRSGGGGGRFSSCGGGGGSFGAG-GGFGSRSL 67
Query: 97 YNNGGGGSF------GGGSGSSFGGSGSYNDFGNYNNQSSNFGP--TKGGNFGGRSSVPC 148
N GG S GGG GS FGG FG FG GG FGG S
Sbjct: 68 VNLGGSKSISISVARGGGRGSGFGGGYGGGGFGGGGFGGGGFGGGGIGGGGFGGFGSGGG 127
Query: 149 GGGGQYFVKPQNQGGYGG 166
G GG F GGYGG
Sbjct: 128 GFGGGGF----GGGGYGG 141
Score = 59.3 bits (142), Expect = 7e-09
Identities = 45/105 (42%), Positives = 52/105 (49%), Gaps = 19/105 (18%)
Query: 69 GGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFG-NYNN 127
GGSRG G G GYGS GS YG GGGS+G G G GG GSY G +Y +
Sbjct: 515 GGSRGGG--GGGYGSGGSSYGS----------GGGSYGSGGGGG-GGRGSYGSGGSSYGS 561
Query: 128 QSSNFGPTKGGNFGGRSSVPCG-GGGQYFVKPQNQGGYGGSSSSR 171
++G GG GG S G G Y + + GG GGSS R
Sbjct: 562 GGGSYG--SGGGGGGHGSYGSGSSSGGY--RGGSGGGGGGSSGGR 602
Score = 58.9 bits (141), Expect = 9e-09
Identities = 51/141 (36%), Positives = 60/141 (42%), Gaps = 27/141 (19%)
Query: 44 FLGRGDGYNGFGNDGGYGGGGPGYSGGSRGYG-SVGQGYGSQGSGYGGSGSYNSYNNGGG 102
F G G FG GG+G GGS+ SV +G G +GSG+GG Y GGG
Sbjct: 46 FSSCGGGGGSFGAGGGFGSRSLVNLGGSKSISISVARG-GGRGSGFGGG--YGGGGFGGG 102
Query: 103 GSFGGG-SGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQ 161
G GGG G GG G FG + + FG GG FGG GG G
Sbjct: 103 GFGGGGFGGGGIGGGG----FGGFGSGGGGFG---GGGFGG------GGYG--------- 140
Query: 162 GGYGGSSSSRHYQDVLASPKL 182
GGYG Q+V + L
Sbjct: 141 GGYGPVCPPGGIQEVTINQSL 161
Score = 43.5 bits (101), Expect = 4e-04
Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 46 GRGDGYNGFGN---DGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGG 102
G G G+ +G+ GGY GG G GGS G G GS G GGS ++GG
Sbjct: 570 GGGGGHGSYGSGSSSGGYRGGSGGGGGGSSG------GRGSGGGSSGGSIGGRGSSSGGV 623
Query: 103 GSFGGGSGSSF 113
S GG S F
Sbjct: 624 KSSGGSSSVKF 634
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 78.6 bits (192), Expect = 1e-14
Identities = 56/132 (42%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 48 GDGYNGFGNDGGYGG--GGPGYSGGSRGYGSVGQGYGSQGSGYGG--SGSYNSYNNGGGG 103
G GY+G + GGYGG G GY GG RG G G G +G GYGG G Y G GG
Sbjct: 431 GGGYSGDRSGGGYGGDRSGGGY-GGDRG-GGYG---GDRGGGYGGDRGGGYGGDRGGYGG 485
Query: 104 SFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGG--GGQYFVKPQNQ 161
GGG G GG G D G Y +G +GG G RS GG GG
Sbjct: 486 DRGGGYGGDRGGYG--GDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRS 543
Query: 162 GGYGGSSSSRHY 173
GGYGG S Y
Sbjct: 544 GGYGGDRSGGGY 555
Score = 75.9 bits (185), Expect = 7e-14
Identities = 54/133 (40%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 48 GDGYNGFGND--GGYGGG-GPGYSGGSRGYGSV-GQGYGSQGSGYGGS-GSYNSYNNGGG 102
GD G+G D GGYGG G GY G GYG G GYG GYGG G Y G G
Sbjct: 454 GDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYG 513
Query: 103 GSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGG-RSSVPCGG--GGQYFVKPQ 159
G GG +GG S +G S +G + G +GG RS GG GG Y
Sbjct: 514 GDRGG-----YGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGY---GG 565
Query: 160 NQGGYGGSSSSRH 172
++GGYGG R+
Sbjct: 566 DRGGYGGKMGGRN 578
Score = 72.8 bits (177), Expect = 6e-13
Identities = 52/156 (33%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 30 NSESPKEPKQLRKLFLGRG-DGYNGFGNDGGYGGGGPGYSGGSRGYG-----SVGQGYGS 83
N P++ + F GRG G G+ GG GG GY G G G S G GY
Sbjct: 377 NEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSG 436
Query: 84 Q--GSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFG 141
G GYGG S Y GG +GG G +GG G Y +G +GG +G
Sbjct: 437 DRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRG----GGYGGDRGGYGGDRGGGYG 492
Query: 142 GRSSVPCGGGGQYFVKPQ----NQGGYGGSSSSRHY 173
G G G Y ++GGYGG S Y
Sbjct: 493 GDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGY 528
Score = 59.3 bits (142), Expect = 7e-09
Identities = 39/87 (44%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 46 GRGDGYNGFGND-GGYGGGGPGYSGGSR---GYG---SVGQGYGSQGS-GYGGSGSYNSY 97
G G G+G D GGYGG GY GG R GYG G GYG S GYGG S Y
Sbjct: 497 GYGGDRGGYGGDRGGYGGDRGGY-GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGY 555
Query: 98 NNGGGGSFGGGSGSSFGGSGSYNDFGN 124
GG +GG G G G ND+ N
Sbjct: 556 GGDRGGGYGGDRGGYGGKMGGRNDYRN 582
Score = 56.6 bits (135), Expect = 4e-08
Identities = 39/102 (38%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 48 GDGYNGFGND-GGYGGGGPGYSGGSRGYGSVGQGYGSQ------------GSGYGG--SG 92
GD G+G D GGYGG GY G GYG GYG GSGYGG SG
Sbjct: 485 GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSG 544
Query: 93 SYNSYNNGGG---GSFGGGSGSSFGGSGSYNDFGNYNNQSSN 131
Y +GGG GG G G G +Y N N
Sbjct: 545 GYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGRNDYRNDQRN 586
Score = 43.5 bits (101), Expect = 4e-04
Identities = 45/152 (29%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 46 GRGDGYNGFGNDG--GYGGGGPGYSGGSR-----------GYGSVGQGYGSQGSGYGG-- 90
G Y+ +GN G GYG YSG + GY S GQ Y GY
Sbjct: 12 GEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSYGGYENQK 71
Query: 91 --SGSYNSYNNGGGGSFGGGSGSSFGGSGSYN--DFGNYNNQSSNFG-PTKGGNFGGRSS 145
S S YNN G SGS G + SY+ D+G ++ G G++ +S+
Sbjct: 72 QSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSN 131
Query: 146 VPCGGGGQYFVKPQNQGGYGG--SSSSRHYQD 175
Q+ QNQ Y + S H QD
Sbjct: 132 Y----DQQHDSYSQNQQSYHSQRENYSHHTQD 159
Score = 42.0 bits (97), Expect = 0.001
Identities = 47/166 (28%), Positives = 54/166 (32%), Gaps = 61/166 (36%)
Query: 58 GGYGGGGPGYSGGSRGYGSVGQGYGS---------------------------------- 83
GG GGG GG RG G QG G
Sbjct: 324 GGGSGGGRRGRGGYRGRGGF-QGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPE 382
Query: 84 ---------QGSGYGGSGSYNSYNNGGG--GSFG--------GGSGSSFGGSGSYNDFGN 124
+G GYGG Y GG G +G GG SS GG G
Sbjct: 383 DSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGG 442
Query: 125 YNNQSS--NFGPTKGGNFGGRSSVPCGG--GGQYFVKPQNQGGYGG 166
Y S +G +GG +GG GG GG Y ++GGYGG
Sbjct: 443 YGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGY---GGDRGGYGG 485
Score = 40.8 bits (94), Expect = 0.002
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 56 NDGGYGGGGPGYSGGSRGYGSVG-QGYGSQGSGYGGSG----SYNSYNNGGGGSFGGGSG 110
+ G YG G G YG+ G QGYG Y G G S N G S+G
Sbjct: 3 DSGSYGQSG-GEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYS 61
Query: 111 SSFGG-----SGSYNDFGNYNNQSSNFGPTKGGNFGGRS 144
S+GG SY+ YNNQ G+ GGR+
Sbjct: 62 QSYGGYENQKQSSYSQ-QPYNNQGQQQNMESSGSQGGRA 99
Score = 35.0 bits (79), Expect = 0.13
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 82 GSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYND--FGNYNNQSSNFGPTKGGN 139
GS G G SY++Y N G +G S S+ G G D +G + S++G + +
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQAS-QSYSGYGQTTDSSYGQNYSGYSSYGQSYSQS 63
Query: 140 FGG--------RSSVPCGGGGQYFVKPQNQGGYGGSSSSRHYQD 175
+GG S P GQ ++ G GG + S D
Sbjct: 64 YGGYENQKQSSYSQQPYNNQGQQ-QNMESSGSQGGRAPSYDQPD 106
Score = 34.7 bits (78), Expect = 0.17
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 74 YGSVGQGY-GSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGG---SGSYNDFG 123
YG +GY GSQG G G G Y+ G G G SG GG G + D+G
Sbjct: 167 YGEDNRGYGGSQGGGRGRGG----YDKDGRGPMTGSSGGDRGGFKNFGGHRDYG 216
Score = 29.6 bits (65), Expect = 5.6
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 104 SFGGGSGSSFGGSGSYNDFGNYNNQS--------SNFGPTKGGNFGGRSSVPCGGGGQYF 155
S G G S G SY+ +GN +Q S +G T ++G S G Y
Sbjct: 2 SDSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSY- 60
Query: 156 VKPQNQGGYGGSSSSRHYQ 174
Q+ GGY S + Q
Sbjct: 61 --SQSYGGYENQKQSSYSQ 77
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 78.6 bits (192), Expect = 1e-14
Identities = 56/132 (42%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 48 GDGYNGFGNDGGYGG--GGPGYSGGSRGYGSVGQGYGSQGSGYGG--SGSYNSYNNGGGG 103
G GY+G + GGYGG G GY GG RG G G G +G GYGG G Y G GG
Sbjct: 434 GGGYSGDRSGGGYGGDRSGGGY-GGDRG-GGYG---GDRGGGYGGDRGGGYGGDRGGYGG 488
Query: 104 SFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGG--GGQYFVKPQNQ 161
GGG G GG G D G Y +G +GG G RS GG GG
Sbjct: 489 DRGGGYGGDRGGYG--GDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRS 546
Query: 162 GGYGGSSSSRHY 173
GGYGG S Y
Sbjct: 547 GGYGGDRSGGGY 558
Score = 75.9 bits (185), Expect = 7e-14
Identities = 54/133 (40%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 48 GDGYNGFGND--GGYGGG-GPGYSGGSRGYGSV-GQGYGSQGSGYGGS-GSYNSYNNGGG 102
GD G+G D GGYGG G GY G GYG G GYG GYGG G Y G G
Sbjct: 457 GDRGGGYGGDRGGGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYG 516
Query: 103 GSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGG-RSSVPCGG--GGQYFVKPQ 159
G GG +GG S +G S +G + G +GG RS GG GG Y
Sbjct: 517 GDRGG-----YGGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGY---GG 568
Query: 160 NQGGYGGSSSSRH 172
++GGYGG R+
Sbjct: 569 DRGGYGGKMGGRN 581
Score = 72.8 bits (177), Expect = 6e-13
Identities = 52/156 (33%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 30 NSESPKEPKQLRKLFLGRG-DGYNGFGNDGGYGGGGPGYSGGSRGYG-----SVGQGYGS 83
N P++ + F GRG G G+ GG GG GY G G G S G GY
Sbjct: 380 NEPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSG 439
Query: 84 Q--GSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFG 141
G GYGG S Y GG +GG G +GG G Y +G +GG +G
Sbjct: 440 DRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRG----GGYGGDRGGYGGDRGGGYG 495
Query: 142 GRSSVPCGGGGQYFVKPQ----NQGGYGGSSSSRHY 173
G G G Y ++GGYGG S Y
Sbjct: 496 GDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGY 531
Score = 59.3 bits (142), Expect = 7e-09
Identities = 39/87 (44%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 46 GRGDGYNGFGND-GGYGGGGPGYSGGSR---GYG---SVGQGYGSQGS-GYGGSGSYNSY 97
G G G+G D GGYGG GY GG R GYG G GYG S GYGG S Y
Sbjct: 500 GYGGDRGGYGGDRGGYGGDRGGY-GGDRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGY 558
Query: 98 NNGGGGSFGGGSGSSFGGSGSYNDFGN 124
GG +GG G G G ND+ N
Sbjct: 559 GGDRGGGYGGDRGGYGGKMGGRNDYRN 585
Score = 56.6 bits (135), Expect = 4e-08
Identities = 39/102 (38%), Positives = 42/102 (41%), Gaps = 18/102 (17%)
Query: 48 GDGYNGFGND-GGYGGGGPGYSGGSRGYGSVGQGYGSQ------------GSGYGG--SG 92
GD G+G D GGYGG GY G GYG GYG GSGYGG SG
Sbjct: 488 GDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGDRGGGSGYGGDRSG 547
Query: 93 SYNSYNNGGG---GSFGGGSGSSFGGSGSYNDFGNYNNQSSN 131
Y +GGG GG G G G +Y N N
Sbjct: 548 GYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGRNDYRNDQRN 589
Score = 43.1 bits (100), Expect = 5e-04
Identities = 35/102 (34%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Query: 55 GNDGGYGGGGPGYSG----GSRGYGSVGQ---GYG-----SQGSGYGGSGSYNSYNNGGG 102
G+ G GG YS GS+GYG Q GYG S G Y G SY +G
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYS 64
Query: 103 GSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRS 144
S+GG SY+ YNNQ G+ GGR+
Sbjct: 65 QSYGGYENQK---QSSYSQ-QPYNNQGQQQNMESSGSQGGRA 102
Score = 42.0 bits (97), Expect = 0.001
Identities = 47/166 (28%), Positives = 54/166 (32%), Gaps = 61/166 (36%)
Query: 58 GGYGGGGPGYSGGSRGYGSVGQGYGS---------------------------------- 83
GG GGG GG RG G QG G
Sbjct: 327 GGGSGGGRRGRGGYRGRGGF-QGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPE 385
Query: 84 ---------QGSGYGGSGSYNSYNNGGG--GSFG--------GGSGSSFGGSGSYNDFGN 124
+G GYGG Y GG G +G GG SS GG G
Sbjct: 386 DSRPSGGDFRGRGYGGERGYRGRGGRGGDRGGYGGDRSGGGYGGDRSSGGGYSGDRSGGG 445
Query: 125 YNNQSS--NFGPTKGGNFGGRSSVPCGG--GGQYFVKPQNQGGYGG 166
Y S +G +GG +GG GG GG Y ++GGYGG
Sbjct: 446 YGGDRSGGGYGGDRGGGYGGDRGGGYGGDRGGGY---GGDRGGYGG 488
Score = 40.8 bits (94), Expect = 0.002
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 11/132 (8%)
Query: 51 YNGFGN--DGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGG 108
Y+G+G D YG GYS + Q YG + S S YNN G
Sbjct: 35 YSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQSSYSQQPYNNQGQQQNMES 94
Query: 109 SGSSFGGSGSYN--DFGNYNNQSSNFG-PTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYG 165
SGS G + SY+ D+G ++ G G++ +S+ Q+ QNQ Y
Sbjct: 95 SGSQGGRAPSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNY----DQQHDSYSQNQQSYH 150
Query: 166 G--SSSSRHYQD 175
+ S H QD
Sbjct: 151 SQRENYSHHTQD 162
Score = 39.3 bits (90), Expect = 0.007
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
Query: 56 NDGGYGGGGPGYSGGSRGYGSVG-QGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFG 114
+ G YG G G YG+ G QGYG Y G G + ++ G ++ G S
Sbjct: 3 DSGSYGQSG-GEQQSYSTYGNPGSQGYGQASQSYSGYG--QTTDSSYGQNYSGYSSYGQS 59
Query: 115 GSGSYNDFGNYNNQ-SSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSS 169
SG +G Y NQ S++ N G + ++ G +Q YG S
Sbjct: 60 QSGYSQSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYDQPDYGQQDS 115
Score = 34.7 bits (78), Expect = 0.17
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 74 YGSVGQGY-GSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGG---SGSYNDFG 123
YG +GY GSQG G G G Y+ G G G SG GG G + D+G
Sbjct: 170 YGEDNRGYGGSQGGGRGRGG----YDKDGRGPMTGSSGGDRGGFKNFGGHRDYG 219
Score = 29.3 bits (64), Expect = 7.3
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 104 SFGGGSGSSFGGSGSYNDFGNYNNQS--------SNFGPTKGGNFGGRSSVPCGGGGQYF 155
S G G S G SY+ +GN +Q S +G T ++G S G
Sbjct: 2 SDSGSYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQS 61
Query: 156 VKPQNQGGYGGSSSSRHYQ 174
Q+ GGY S + Q
Sbjct: 62 GYSQSYGGYENQKQSSYSQ 80
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 74.7 bits (182), Expect = 2e-13
Identities = 51/118 (43%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 54 FGNDGGYGGG-GPGYSGGSRGYGSVGQGYGSQG-SGYGGSGSYNSYNNGGG--GSFGGGS 109
FG GG G G GYS GS YGS G+ GS+G SG GGS S Y +GGG G +G G
Sbjct: 518 FGGSGGRGSSSGGGYSSGSSSYGSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGG 577
Query: 110 GSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGS 167
G S GGS S +G+ + S+ G ++GG+ G GGGG VK + +G S
Sbjct: 578 G-SKGGSISGGGYGSGGGKHSSGGGSRGGSSSG-GGYGSGGGGSSSVKGSSGEAFGSS 633
Score = 60.5 bits (145), Expect = 3e-09
Identities = 35/78 (44%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 48 GDGYNGFGNDGGYGGGGPGYSGGS---RGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGS 104
G GY G GG G G G GGS GYGS G + S G GGS S Y +GGGGS
Sbjct: 560 GGGYGSGGGSGGRYGSGGGSKGGSISGGGYGSGGGKHSSGGGSRGGSSSGGGYGSGGGGS 619
Query: 105 FG--GGSGSSFGGSGSYN 120
G SG +FG S +++
Sbjct: 620 SSVKGSSGEAFGSSVTFS 637
Score = 59.3 bits (142), Expect = 7e-09
Identities = 43/116 (37%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 55 GNDGGYGGGGPGYSG--GSRGYGSVGQGYGSQGSGYGGSGSYNSYNN--GGGGSFGGGSG 110
G GG+GGGG G G G S+ G G+G +G + GGG SFGGGSG
Sbjct: 48 GGGGGFGGGGFGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGGSSFGGGSG 107
Query: 111 SSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGG 166
S GG G FG + G FGG V GG F GGY G
Sbjct: 108 FSGGGFG-----------GGGFGGGRFGGFGGPGGVGGLGGPGGF----GPGGYPG 148
Score = 58.9 bits (141), Expect = 9e-09
Identities = 43/111 (38%), Positives = 53/111 (47%), Gaps = 24/111 (21%)
Query: 48 GDGYNGFGNDGGYG-------GGGPGYS----GGSRGYGSVGQGYGSQGSGYGGSGSY-- 94
G G GFG GG+G GG S GG G+G+ G G+G +G G+GG S+
Sbjct: 47 GGGGGGFGG-GGFGSRSLVGLGGTKSISISVAGGGGGFGAAG-GFGGRGGGFGGGSSFGG 104
Query: 95 -NSYNNG--GGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGG 142
+ ++ G GGG FGGG FGG G G FGP GG GG
Sbjct: 105 GSGFSGGGFGGGGFGGGRFGGFGGPGGVGGLGG----PGGFGP--GGYPGG 149
Score = 58.9 bits (141), Expect = 9e-09
Identities = 38/94 (40%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 48 GDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGG 107
G G G+ GG GGGG GG G G YGS G GGS S Y +GGG G
Sbjct: 540 GSGGRQSGSRGGSGGGGSISGGGYGSGGGSGGRYGSGGGSKGGSISGGGYGSGGGKHSSG 599
Query: 108 GSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFG 141
G S GGS S +G+ SS+ + G FG
Sbjct: 600 --GGSRGGSSSGGGYGSGGGGSSSVKGSSGEAFG 631
Score = 45.1 bits (105), Expect = 1e-04
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 44 FLGRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGG 103
F GRG G+ G G GGG G+SGG G G G G + G+GG G GG G
Sbjct: 89 FGGRGGGFGG----GSSFGGGSGFSGGGFGGGGFG---GGRFGGFGGPGGVGGL--GGPG 139
Query: 104 SFGGG 108
FG G
Sbjct: 140 GFGPG 144
Score = 45.1 bits (105), Expect = 1e-04
Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 80 GYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYN--DFGNYNNQSSNFGPTKG 137
G G +GS GG S S + G GG G G S GG GS + +G+ +G + G
Sbjct: 520 GSGGRGSSSGGGYSSGSSSYGSGGRQSGSRGGS-GGGGSISGGGYGSGGGSGGRYG-SGG 577
Query: 138 GNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSS 170
G+ GG S+ GG G K + GG G SSS
Sbjct: 578 GSKGG--SISGGGYGSGGGKHSSGGGSRGGSSS 608
Score = 42.0 bits (97), Expect = 0.001
Identities = 41/122 (33%), Positives = 49/122 (40%), Gaps = 26/122 (21%)
Query: 59 GYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGS 118
G GGGG G+ G S G V G S + S S + GGGG F GG GS
Sbjct: 11 GRGGGGGGFRGFSSGSAVVSGGSRRSTSSF----SCLSRHGGGGGGF------GGGGFGS 60
Query: 119 YNDFGNYNNQS---------SNFGPT-----KGGNFGGRSSVPCGGGGQYFVKPQNQGGY 164
+ G +S FG +GG FGG SS GGG + GG+
Sbjct: 61 RSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGGSSF--GGGSGFSGGGFGGGGF 118
Query: 165 GG 166
GG
Sbjct: 119 GG 120
Score = 32.7 bits (73), Expect = 0.66
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 102 GGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQ 161
GGS G GS S G S + +G+ QS + +GG+ GG S GG Y +
Sbjct: 519 GGSGGRGSSSGGGYSSGSSSYGSGGRQSGS----RGGSGGGGSI----SGGGYGSGGGSG 570
Query: 162 GGYGGSSSSR 171
G YG S+
Sbjct: 571 GRYGSGGGSK 580
Score = 30.8 bits (68), Expect = 2.5
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 109 SGSSFGGSG--SYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGG 166
S ++FGGSG + G Y++ SS++G GG G S GGGG + GGYG
Sbjct: 514 SKAAFGGSGGRGSSSGGGYSSGSSSYG--SGGRQSG-SRGGSGGGGSI-----SGGGYGS 565
Query: 167 SSSS 170
S
Sbjct: 566 GGGS 569
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 71.6 bits (174), Expect = 1e-12
Identities = 53/125 (42%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGY----SGGSRGYGSVGQGYGSQG-SGYGGSGSYNSYNNG 100
G+ + YN GG GGGG Y S S G GS G GYG+Q SG GGSG Y + G
Sbjct: 156 GQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGS-GGGYGNQDQSGGGGSGGYGQQDRG 214
Query: 101 GGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPT-KGGNFGGRSSVPCG--GGGQYFVK 157
G G GGSG GG G G YN S + P +GG GGR + GG F
Sbjct: 215 GRGR--GGSGGGGGGGG-----GGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGG 267
Query: 158 PQNQG 162
P++QG
Sbjct: 268 PRDQG 272
Score = 57.4 bits (137), Expect = 3e-08
Identities = 44/134 (32%), Positives = 53/134 (39%), Gaps = 20/134 (14%)
Query: 53 GFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQ------GSGYGGSGSYNSYNNGGGGSFG 106
G+G+ GGYG S S G S GYG Q YG S +SY GS+
Sbjct: 74 GYGSTGGYGSSQSSQS--SYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYS 131
Query: 107 -----GGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQ 161
GG S+G SYN Y Q+ + + GG GG GGGG Y +
Sbjct: 132 QQPSYGGQQQSYGQQQSYNPPQGYGQQNQ-YNSSSGGGGGG------GGGGNYGQDQSSM 184
Query: 162 GGYGGSSSSRHYQD 175
GGS QD
Sbjct: 185 SSGGGSGGGYGNQD 198
Score = 57.0 bits (136), Expect = 3e-08
Identities = 44/142 (30%), Positives = 54/142 (38%), Gaps = 30/142 (21%)
Query: 46 GRGDGYNGFGND-------GGYGGGGPGYSGGSRGYGSVGQ--GYGSQGSGYG------- 89
G+ Y G+G G YG S G GS Q YG Q YG
Sbjct: 92 GQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYNP 151
Query: 90 --GSGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVP 147
G G N YN+ GG GGG G ++G S S + G GG +G +
Sbjct: 152 PQGYGQQNQYNSSSGGGGGGGGGGNYGQDQS----------SMSSGGGSGGGYGNQDQSG 201
Query: 148 CGGGGQYFVKPQNQGGYGGSSS 169
GG G Y Q++GG G S
Sbjct: 202 GGGSGGY--GQQDRGGRGRGGS 221
Score = 51.6 bits (122), Expect = 1e-06
Identities = 35/91 (38%), Positives = 37/91 (40%), Gaps = 12/91 (13%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSG-GSRGYGSVGQGYGSQGSGYG-GSGSYNSYNNGGG- 102
G G GY GG G GG G G RG G G G G G GY SG Y GGG
Sbjct: 189 GSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGR 248
Query: 103 ---GSFGGGSGSSFGGSGSYNDFGNYNNQSS 130
G GG G +N FG +Q S
Sbjct: 249 GGRGGMGGSD------RGGFNKFGGPRDQGS 273
Score = 51.2 bits (121), Expect = 2e-06
Identities = 44/118 (37%), Positives = 53/118 (44%), Gaps = 30/118 (25%)
Query: 65 PGYSGGSRGYG-----SVGQGYGSQ---------GSGYGGSGSYN---SYNNGGGGSFGG 107
P Y G + YG + QGYG Q G G GG G+Y S + GGGS GG
Sbjct: 134 PSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGG 193
Query: 108 -GSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGY 164
G+ GG GS G Y Q G +GG+ GG GGGG Y ++ GGY
Sbjct: 194 YGNQDQSGGGGS----GGYGQQDRG-GRGRGGSGGGGG----GGGGGY---NRSSGGY 239
Score = 47.8 bits (112), Expect = 2e-05
Identities = 41/125 (32%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 54 FGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGSSF 113
F GG G GG G GG G G GYG GSG GG G + S GGGG G
Sbjct: 375 FNRGGGNGRGGRG-RGGPMGRG----GYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCP 429
Query: 114 GGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGG-------GGQYFVKPQNQGGYGG 166
+ +F N + P G GG GG GG+ ++GGY G
Sbjct: 430 NPTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGR---GGYDRGGYRG 486
Query: 167 SSSSR 171
R
Sbjct: 487 RGGDR 491
Score = 47.0 bits (110), Expect = 3e-05
Identities = 42/157 (26%), Positives = 61/157 (38%), Gaps = 34/157 (21%)
Query: 53 GFGNDGGYGGGGPGYSGGSRGYGSVGQG------YG-SQGSGYGGSGSYNSYNNGGGGSF 105
G+ G YSG S+ + G G YG SQ +GYG + Y + GG
Sbjct: 24 GYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTGGYGS 83
Query: 106 GGGSGSSFGGSGSYNDFGNY------------NNQSSNFGPTKGG------NFGGRS--- 144
S SS+G SY +G ++QSS++G + G ++GG+
Sbjct: 84 SQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSY 143
Query: 145 ------SVPCGGGGQYFVKPQNQGGYGGSSSSRHYQD 175
+ P G G Q + GG GG + QD
Sbjct: 144 GQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQD 180
Score = 45.4 bits (106), Expect = 1e-04
Identities = 56/168 (33%), Positives = 66/168 (39%), Gaps = 58/168 (34%)
Query: 47 RGDGYNGFGND-GGYGGGGP----GYSGGSRGYGSVGQGYGSQGSGYGG---SGSYNSYN 98
R D G GN GG G GGP GY GG G G G G+ S G G GG +G + N
Sbjct: 372 RADFNRGGGNGRGGRGRGGPMGRGGYGGGGSGGGGRG-GFPSGGGGGGGQQRAGDWKCPN 430
Query: 99 -----------------------NGGGGSFGGGSGSSF-----GGSGSYNDFGNYNNQSS 130
GGG G G ++ GG G Y D G Y +
Sbjct: 431 PTCENMNFSWRNECNQCKAPKPDGPGGGPGGSHMGGNYGDDRRGGRGGY-DRGGYRGR-- 487
Query: 131 NFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYG-GSSSSR--HYQD 175
G +GG GGR GGG ++GG+G G SR H QD
Sbjct: 488 --GGDRGGFRGGR-----GGG--------DRGGFGPGKMDSRGEHRQD 520
Score = 43.1 bits (100), Expect = 5e-04
Identities = 37/107 (34%), Positives = 47/107 (43%), Gaps = 17/107 (15%)
Query: 78 GQGYGSQGSGYGGSGSYNSYNNGGGGS-FGGGSGSSFGGSGSYNDFGNYNNQSS--NFGP 134
GQGY Q S G SY+ Y+ S +G S SS+G S + Y QS+ +G
Sbjct: 22 GQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQN----TGYGTQSTPQGYGS 77
Query: 135 TKG--------GNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSSRHY 173
T G ++G +SS P G GQ G YG SS S Y
Sbjct: 78 TGGYGSSQSSQSSYGQQSSYP--GYGQQPAPSSTSGSYGSSSQSSSY 122
Score = 29.3 bits (64), Expect = 7.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 45 LGRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYG 89
+G G + G GGY GG GG RG G+G G +G G+G
Sbjct: 464 MGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRG-GFG 507
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 71.6 bits (174), Expect = 1e-12
Identities = 48/110 (43%), Positives = 54/110 (49%), Gaps = 14/110 (12%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSF 105
GRG G+ G G GG GGGG G GG G+G G G+G G G GG G GGGG
Sbjct: 334 GRG-GWGGGGGGGGRGGGGGG--GGRGGWGGGGGGWGGGGGGGGGWG------GGGGGGR 384
Query: 106 GGGSG-SSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQY 154
GG G +GG G Y G Y + +G GG GG GGGG Y
Sbjct: 385 GGFQGRGDYGGRGGYGGRGGYGGR--GYGDPYGGGGGGGGG--GGGGGGY 430
Score = 69.7 bits (169), Expect = 5e-12
Identities = 51/128 (39%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 47 RGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFG 106
R +G G G GG GGGG G GG G G G+G G G+GG G GGGG +G
Sbjct: 328 RQEGGGGRGGWGG-GGGGGGRGGGGGGGGR--GGWGGGGGGWGGGG-------GGGGGWG 377
Query: 107 GGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRS-SVPCGGGGQYFVKPQNQGGYG 165
GG G GG G + G+Y + G G +GGR P GGGG GG G
Sbjct: 378 GGGG---GGRGGFQGRGDYGGRGGYGG---RGGYGGRGYGDPYGGGG------GGGGGGG 425
Query: 166 GSSSSRHY 173
G R Y
Sbjct: 426 GGGGYRRY 433
Score = 61.6 bits (148), Expect = 1e-09
Identities = 36/78 (46%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQG-YGSQGSGYGGSGSYNSYNNGGGGS 104
G G G G+G GG GGG G GG RG G G+G YG +G GYGG G Y G
Sbjct: 358 GWGGGGGGWGGGGGGGGGWGGGGGGGRG-GFQGRGDYGGRG-GYGGRGGYGGRGYGDPYG 415
Query: 105 FGGGSGSSFGGSGSYNDF 122
GGG G GG G Y +
Sbjct: 416 GGGGGGGGGGGGGGYRRY 433
Score = 41.6 bits (96), Expect = 0.001
Identities = 27/55 (49%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 44 FLGRGDGYNGFGNDGGYGG-GGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSY 97
F GRGD Y G G GG GG GG RGYG G G G G GG G Y Y
Sbjct: 387 FQGRGD-YGGRGGYGGRGGYGG-------RGYGDPYGGGGGGGGGGGGGGGYRRY 433
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 63.5 bits (153), Expect = 3e-10
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 52 NGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGS 111
+G G GGG G GS G GS G + GS GGS S +S GGS GG SG+
Sbjct: 235 SGSGGGSSNSGGGSGSQSGSSGSGSNGDN--NNGSSSGGSSSGSSSGGSSGGSSGGSSGN 292
Query: 112 SFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQY---FVKPQNQGGYGGSS 168
S GS D G+ ++ S+ G + GN GG GGG + KP N+ G S
Sbjct: 293 S---GGSRGDSGSESSWGSSTG-SSSGNHGG-----SGGGNGHKPGCEKPGNEARGSGES 343
Query: 169 SSRHY--QDVLASPKLKEAAPG 188
+ + Q V ++ + E +PG
Sbjct: 344 GIQGFRGQGVSSNMRNSETSPG 365
Score = 59.3 bits (142), Expect = 7e-09
Identities = 52/163 (31%), Positives = 65/163 (39%), Gaps = 49/163 (30%)
Query: 50 GYNGFGNDGGYGGGG---------------PGYSGGSRGYGSVGQGYGSQGS-------- 86
G+ FG+ GG GG G PG S GS G G +G G+
Sbjct: 147 GHGIFGSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGT 206
Query: 87 ---------GYGGSGSYN----------SYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNN 127
GYG + N S + GG + GGGSGS G SGS ++ G+ NN
Sbjct: 207 NTQGAVAQPGYGSVRASNQNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSN-GDNNN 265
Query: 128 QSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSS 170
SS+ G + G + GG S GG N GG G S S
Sbjct: 266 GSSSGGSSSGSSSGGSSGGSSGGSS------GNSGGSRGDSGS 302
Score = 55.5 bits (132), Expect = 1e-07
Identities = 46/134 (34%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 50 GYNGFGNDGGYGGGGPGYSGGSRGYGSVGQ-GYGS-----QGSGY-----GGSGSYNSYN 98
G N G G GG G + G+ G+V Q GYGS Q G GSG +S +
Sbjct: 185 GMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYGSVRASNQNEGCTNPPPSGSGGGSSNS 244
Query: 99 NGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKP 158
GG GS G SGS G + ++ S+ G + GG+ GG SS GG
Sbjct: 245 GGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGG-SSGNSGGSRGDSGSE 303
Query: 159 QNQGGYGGSSSSRH 172
+ G GSSS H
Sbjct: 304 SSWGSSTGSSSGNH 317
Score = 30.0 bits (66), Expect = 4.3
Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGS-QGSGYGGSGSYNSYNNGGGGS 104
G D + + G G+ G + + G + +GS G G ++ GG
Sbjct: 90 GAADALGNRVGEAAHALGNTGHEIGRQAEDVIRHGADAVRGSWQGVPGHNGAWETSGGHG 149
Query: 105 FGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGY 164
G G GG G N G + G+FG P G P QGG
Sbjct: 150 IFGSQGG-LGGQGQGNPGGLGTPWVHGYPGNSAGSFGMN---PQGA-------PWGQGGN 198
Query: 165 GGSSS-SRHYQDVLASP 180
GG + + Q +A P
Sbjct: 199 GGPPNFGTNTQGAVAQP 215
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 63.2 bits (152), Expect = 5e-10
Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 52 NGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGSQGSGYGGSGSYNSYNNGGGGSFGGGSGS 111
+G G GGG G GS G GS G + GS GGS S +S GGS GG SG+
Sbjct: 235 SGSGGGSSNSGGGSGSQSGSSGSGSNGDN--NNGSSSGGSSSGSSSGGSSGGSSGGSSGN 292
Query: 112 SFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQY---FVKPQNQGGYGGSS 168
S GS D G+ ++ S+ G + GN GG GGG + KP N+ G S
Sbjct: 293 S---GGSRGDSGSESSWGSSTG-SSSGNHGG-----SGGGNGHKPGCEKPGNEARGSGES 343
Query: 169 SSRHYQDVLASPKLKEAAP-------GSAERWRRAQAA 199
+ ++ S ++E + GS + +R ++ +
Sbjct: 344 GIQGFRGQGVSSNMREISKEGNRLLGGSGDNYRNSETS 381
Score = 59.3 bits (142), Expect = 7e-09
Identities = 52/163 (31%), Positives = 65/163 (39%), Gaps = 49/163 (30%)
Query: 50 GYNGFGNDGGYGGGG---------------PGYSGGSRGYGSVGQGYGSQGS-------- 86
G+ FG+ GG GG G PG S GS G G +G G+
Sbjct: 147 GHGIFGSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQGGNGGPPNFGT 206
Query: 87 ---------GYGGSGSYN----------SYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNN 127
GYG + N S + GG + GGGSGS G SGS ++ G+ NN
Sbjct: 207 NTQGAVAQPGYGSVRASNQNEGCTNPPPSGSGGGSSNSGGGSGSQSGSSGSGSN-GDNNN 265
Query: 128 QSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGYGGSSSS 170
SS+ G + G + GG S GG N GG G S S
Sbjct: 266 GSSSGGSSSGSSSGGSSGGSSGGSS------GNSGGSRGDSGS 302
Score = 55.5 bits (132), Expect = 1e-07
Identities = 46/134 (34%), Positives = 58/134 (43%), Gaps = 12/134 (8%)
Query: 50 GYNGFGNDGGYGGGGPGYSGGSRGYGSVGQ-GYGS-----QGSGY-----GGSGSYNSYN 98
G N G G GG G + G+ G+V Q GYGS Q G GSG +S +
Sbjct: 185 GMNPQGAPWGQGGNGGPPNFGTNTQGAVAQPGYGSVRASNQNEGCTNPPPSGSGGGSSNS 244
Query: 99 NGGGGSFGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKP 158
GG GS G SGS G + ++ S+ G + GG+ GG SS GG
Sbjct: 245 GGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGG-SSGNSGGSRGDSGSE 303
Query: 159 QNQGGYGGSSSSRH 172
+ G GSSS H
Sbjct: 304 SSWGSSTGSSSGNH 317
Score = 30.0 bits (66), Expect = 4.3
Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 46 GRGDGYNGFGNDGGYGGGGPGYSGGSRGYGSVGQGYGS-QGSGYGGSGSYNSYNNGGGGS 104
G D + + G G+ G + + G + +GS G G ++ GG
Sbjct: 90 GAADALGNRVGEAAHALGNTGHEIGRQAEDVIRHGADAVRGSWQGVPGHNGAWETSGGHG 149
Query: 105 FGGGSGSSFGGSGSYNDFGNYNNQSSNFGPTKGGNFGGRSSVPCGGGGQYFVKPQNQGGY 164
G G GG G N G + G+FG P G P QGG
Sbjct: 150 IFGSQGG-LGGQGQGNPGGLGTPWVHGYPGNSAGSFGMN---PQGA-------PWGQGGN 198
Query: 165 GGSSS-SRHYQDVLASP 180
GG + + Q +A P
Sbjct: 199 GGPPNFGTNTQGAVAQP 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.130 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,773,225
Number of Sequences: 37866
Number of extensions: 1365051
Number of successful extensions: 18295
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 381
Number of HSP's that attempted gapping in prelim test: 5399
Number of HSP's gapped (non-prelim): 4707
length of query: 434
length of database: 18,247,518
effective HSP length: 105
effective length of query: 329
effective length of database: 14,271,588
effective search space: 4695352452
effective search space used: 4695352452
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.