Guide to the Human Genome
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Name: MEF2C Sequence: fasta or formatted (473aa) NCBI GI: 19923215
Description:

myocyte enhancer factor 2C isoform 1

Referenced in:

MAP Kinase Pathways
Muscle
Additional Genes in Development

Other entries for this name:
alt prot [463aa] myocyte enhancer factor 2C isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         21           1
 C cysteine            1.3          6           1
 D aspartate           5.1         24           2
 E glutamate           4.2         20           1
 F phenylalanine       1.5          7           1
 G glycine             7.2         34           2
 H histidine           2.7         13           1
 I isoleucine          3.4         16           2
 K lysine              4.0         19           2
 L leucine             9.5         45           3
 M methionine          3.2         15           1
 N asparagine          6.8         32           2
 P proline             9.1         43           3
 Q glutamine           3.6         17           3
 R arginine            5.7         27           1
 S serine             14.4         68           3
 T threonine           6.3         30           3
 V valine              4.7         22           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myocyte enhancer factor 2C isoform 1 
MEF2C                 0.915   myocyte enhancer factor 2C isoform 2 
MEF2A                 0.532   myocyte enhancer factor 2A isoform 2 
MEF2A                 0.521   myocyte enhancer factor 2A isoform 1 
MEF2D                 0.447   myocyte enhancer factor 2D 
MEF2A                 0.364   myocyte enhancer factor 2A isoform 3 
MEF2A                 0.353   myocyte enhancer factor 2A isoform 4 
MEF2B                 0.178   myocyte enhancer factor 2B isoform a 
LOC729991-MEF2B       0.173   myocyte enhancer factor 2B isoform b 
LOC100294395          0.133   PREDICTED: similar to serum response factor-related...
SRF                   0.038   serum response factor (c-fos serum response element-b...
MUC12                 0.023   PREDICTED: mucin 12 
HIPK2                 0.020   homeodomain interacting protein kinase 2 isoform 1 ...
SALL1                 0.018   sal-like 1 isoform b 
SALL1                 0.018   sal-like 1 isoform a 
ERBB3                 0.017   erbB-3 isoform 1 precursor 
RPRD2                 0.016   Regulation of nuclear pre-mRNA domain containing 2 ...
ATN1                  0.015   atrophin-1 
ATN1                  0.015   atrophin-1 
NCOA6                 0.015   nuclear receptor coactivator 6 
MUC12                 0.015   PREDICTED: mucin 12 
LOC100133714          0.015   PREDICTED: similar to Mucin-12, partial 
MUC21                 0.015   mucin 21 
DACH1                 0.014   dachshund homolog 1 isoform b 
DACH1                 0.014   dachshund homolog 1 isoform a 
DACH1                 0.014   dachshund homolog 1 isoform c 
MUC12                 0.014   PREDICTED: mucin 12, cell surface associated 
CNOT3                 0.014   CCR4-NOT transcription complex, subunit 3 
HNRNPUL1              0.013   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.013   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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