Guide to the Human Genome
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Name: MEF2C Sequence: fasta or formatted (463aa) NCBI GI: 196114945
Description:

myocyte enhancer factor 2C isoform 2

Referenced in:

Muscle
Additional Genes in Development

Other entries for this name:
alt prot [473aa] myocyte enhancer factor 2C isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         22           1
 C cysteine            1.1          5           1
 D aspartate           3.7         17           1
 E glutamate           4.8         22           2
 F phenylalanine       1.7          8           1
 G glycine             6.9         32           2
 H histidine           2.8         13           1
 I isoleucine          3.5         16           2
 K lysine              5.0         23           2
 L leucine             8.6         40           2
 M methionine          3.2         15           1
 N asparagine          7.3         34           2
 P proline             9.5         44           3
 Q glutamine           3.5         16           3
 R arginine            5.2         24           1
 S serine             14.3         66           3
 T threonine           6.7         31           3
 V valine              4.3         20           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myocyte enhancer factor 2C isoform 2 
MEF2C                 0.933   myocyte enhancer factor 2C isoform 1 
MEF2A                 0.582   myocyte enhancer factor 2A isoform 1 
MEF2A                 0.532   myocyte enhancer factor 2A isoform 2 
MEF2D                 0.422   myocyte enhancer factor 2D 
MEF2A                 0.349   myocyte enhancer factor 2A isoform 4 
MEF2A                 0.344   myocyte enhancer factor 2A isoform 3 
LOC100294395          0.178   PREDICTED: similar to serum response factor-related...
MEF2B                 0.174   myocyte enhancer factor 2B isoform a 
LOC729991-MEF2B       0.172   myocyte enhancer factor 2B isoform b 
SRF                   0.037   serum response factor (c-fos serum response element-b...
HIPK2                 0.024   homeodomain interacting protein kinase 2 isoform 1 ...
DACH1                 0.020   dachshund homolog 1 isoform b 
DACH1                 0.020   dachshund homolog 1 isoform a 
DACH1                 0.020   dachshund homolog 1 isoform c 
CNOT3                 0.020   CCR4-NOT transcription complex, subunit 3 
MUC12                 0.020   PREDICTED: mucin 12 
ERBB3                 0.019   erbB-3 isoform 1 precursor 
MUC12                 0.018   PREDICTED: mucin 12 
BCL9L                 0.018   B-cell CLL/lymphoma 9-like 
BAT2                  0.016   HLA-B associated transcript-2 
MUC21                 0.016   mucin 21 
LOC100133714          0.016   PREDICTED: similar to Mucin-12, partial 
ATN1                  0.016   atrophin-1 
ATN1                  0.016   atrophin-1 
ANKRD17               0.016   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.016   ankyrin repeat domain protein 17 isoform b 
KIAA1217              0.016   sickle tail isoform 3 
KIAA1217              0.016   sickle tail isoform 2 
KIAA1217              0.016   sickle tail isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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