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Search of human proteins with 239747259
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747259 PREDICTED: hypothetical protein [Homo sapiens]
(176 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747259 PREDICTED: hypothetical protein [Homo sapiens] 375 e-104
gi|4809279 annexin VII isoform 2 [Homo sapiens] 52 2e-07
gi|4502111 annexin VII isoform 1 [Homo sapiens] 52 2e-07
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 48 5e-06
gi|190343021 Sec24-related protein D [Homo sapiens] 42 2e-04
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 42 4e-04
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 42 4e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 41 5e-04
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 41 6e-04
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 41 6e-04
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 41 6e-04
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 40 8e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 40 8e-04
gi|188536004 zinc finger protein 469 [Homo sapiens] 40 0.001
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 40 0.001
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 40 0.001
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 40 0.001
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 40 0.001
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 40 0.001
gi|27502386 nuclear factor of activated T-cells, cytosolic compo... 40 0.001
gi|189217919 protein associated with topoisomerase II homolog 1 ... 40 0.001
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.002
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.002
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 39 0.002
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 39 0.002
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 39 0.002
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 39 0.003
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 39 0.003
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 39 0.003
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 39 0.003
>gi|239747259 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 375 bits (962), Expect = e-104
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MGSGLHPWVVLRPEGSARLQGHFRPPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPK 60
MGSGLHPWVVLRPEGSARLQGHFRPPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPK
Sbjct: 1 MGSGLHPWVVLRPEGSARLQGHFRPPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPK 60
Query: 61 TSSHGFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKL 120
TSSHGFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKL
Sbjct: 61 TSSHGFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKL 120
Query: 121 SLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGPASL 176
SLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGPASL
Sbjct: 121 SLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGPASL 176
>gi|4809279 annexin VII isoform 2 [Homo sapiens]
Length = 488
Score = 52.4 bits (124), Expect = 2e-07
Identities = 46/147 (31%), Positives = 53/147 (36%), Gaps = 28/147 (19%)
Query: 23 FRPPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGFPVTLGGAQGQAVPGGL 82
+ P P PA F P +P P F P+G P+ S G+P GA G PGG
Sbjct: 11 YPPFPGYPPAGQESSFPPSGQYPYPSGFPPMGGGAYPQVPSSGYP----GAGGYPAPGGY 66
Query: 83 HSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGP 142
PA G G P PGG S +PPG PP G G
Sbjct: 67 --------PA----PGGYPGAPQPGGAPSYP-------GVPPGQGFGVPPGG-----AGF 102
Query: 143 PSLDLPPTHSPGPGPRGELLVSSRPQG 169
PP+ S G GP L P G
Sbjct: 103 SGYPQPPSQSYGGGPAQVPLPGGFPGG 129
>gi|4502111 annexin VII isoform 1 [Homo sapiens]
Length = 466
Score = 52.4 bits (124), Expect = 2e-07
Identities = 46/147 (31%), Positives = 53/147 (36%), Gaps = 28/147 (19%)
Query: 23 FRPPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGFPVTLGGAQGQAVPGGL 82
+ P P PA F P +P P F P+G P+ S G+P GA G PGG
Sbjct: 11 YPPFPGYPPAGQESSFPPSGQYPYPSGFPPMGGGAYPQVPSSGYP----GAGGYPAPGGY 66
Query: 83 HSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGP 142
PA G G P PGG S +PPG PP G G
Sbjct: 67 --------PA----PGGYPGAPQPGGAPSYP-------GVPPGQGFGVPPGG-----AGF 102
Query: 143 PSLDLPPTHSPGPGPRGELLVSSRPQG 169
PP+ S G GP L P G
Sbjct: 103 SGYPQPPSQSYGGGPAQVPLPGGFPGG 129
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 47.8 bits (112), Expect = 5e-06
Identities = 51/162 (31%), Positives = 62/162 (38%), Gaps = 30/162 (18%)
Query: 25 PPPKTIPAKGNVIFSPKSSFP--LPRAFIPVGSNFQPKTSSHGFPVTLGGAQGQAVPGGL 82
PPP + P P + P +P A P P + HG P G G PG
Sbjct: 238 PPPGSFPPP----VPPPGALPPGIPPAMPP--PPMPPGAAGHGPPSA--GTPGAGHPGHG 289
Query: 83 HSGNHNIDPARRKWGGQAAGVPGPG-GDSSLSDE----LGAKLSLPPGS---PHRCPPPG 134
HS H P G+P PG L+ LG + PPGS P PPPG
Sbjct: 290 HSHPHPFPPG---------GMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPG 340
Query: 135 LFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGPASL 176
+ PGPP + +PP P P G P G+ GP L
Sbjct: 341 M--PHPGPPPMGMPPRGPPFGSPMGH-PGPMPPHGMRGPPPL 379
Score = 33.9 bits (76), Expect = 0.075
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 58 QPKTSSHGFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELG 117
+P T S+ F G + + L + + + A R A P P + + LG
Sbjct: 170 RPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLG 229
Query: 118 AKLSLP----PGS-PHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
+ L P PGS P PPPG L PG P PP PG G
Sbjct: 230 SGLPPPGMPPPGSFPPPVPPPGA--LPPGIPPAMPPPPMPPGAAGHG 274
Score = 32.3 bits (72), Expect = 0.22
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGL--FLLAPGPPSLDLPPTHSPGPG 156
G+P PG GA LPPG P PPP + GPPS P PG G
Sbjct: 236 GMPPPGSFPPPVPPPGA---LPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHG 289
>gi|190343021 Sec24-related protein D [Homo sapiens]
Length = 1032
Score = 42.4 bits (98), Expect = 2e-04
Identities = 53/180 (29%), Positives = 67/180 (37%), Gaps = 34/180 (18%)
Query: 21 GHFRPPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGFPVTLGGAQG---QA 77
GH+ P T G + + R +P G P H F A G Q
Sbjct: 27 GHYGDPSHTASPTGMMKPAGPLGATATRGMLPPGP---PPPGPHQFGQNGAHATGHPPQR 83
Query: 78 VPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSL--------------- 122
PG N A + Q++ PGP SS++ +LG++LS
Sbjct: 84 FPGPPPVNNVASSHAPYQPSAQSS-YPGPISTSSVT-QLGSQLSAMQINSYGSGMAPPSQ 141
Query: 123 -PPG--------SPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
PPG +P R P P + L PG L PPT GPG L RP GLSGP
Sbjct: 142 GPPGPLSATSLQTPPRPPQPSI--LQPGSQVLPPPPTTLNGPGASPLPLPMYRPDGLSGP 199
Score = 28.5 bits (62), Expect = 3.1
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 98 GQAAGVPGPGGDSSLSDELGAKLS---LPPGSPHRCPPPGLFLLAP-GPPSLDLPPTHSP 153
G + P G + LGA + LPPG P PPG G + PP P
Sbjct: 30 GDPSHTASPTGMMKPAGPLGATATRGMLPPGPP----PPGPHQFGQNGAHATGHPPQRFP 85
Query: 154 GPGPRGELLVSSRPQGLSGPAS 175
GP P + S P S +S
Sbjct: 86 GPPPVNNVASSHAPYQPSAQSS 107
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 41.6 bits (96), Expect = 4e-04
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 91 PARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPT 150
P + K G+ AG PGP G PPG P PPG+ + P + + P
Sbjct: 169 PVKNKKKGKKAGPPGPNGPPG-----------PPGPPGPQGPPGIPGIPGIPGTTVMGPP 217
Query: 151 HSPG-PGPRGELLVSSRPQGLSGPA 174
PG PGP+G P GL GP+
Sbjct: 218 GPPGPPGPQG-------PPGLQGPS 235
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 41.6 bits (96), Expect = 4e-04
Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 91 PARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPT 150
P + K G+ AG PGP G PPG P PPG+ + P + + P
Sbjct: 169 PVKNKKKGKKAGPPGPNGPPG-----------PPGPPGPQGPPGIPGIPGIPGTTVMGPP 217
Query: 151 HSPG-PGPRGELLVSSRPQGLSGPA 174
PG PGP+G P GL GP+
Sbjct: 218 GPPGPPGPQG-------PPGLQGPS 235
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 41.2 bits (95), Expect = 5e-04
Identities = 38/106 (35%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 72 GAQGQA-VPG--GLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPP-GSP 127
G QG A +PG GL N+ P K + G+PGP G++ + G + GSP
Sbjct: 323 GEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSP 382
Query: 128 HRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
PG PG P LD P + PGP+G+ V P GL GP
Sbjct: 383 GSDGKPGY----PGKPGLDGPKGNPGLPGPKGDPGVGG-PPGLPGP 423
Score = 31.6 bits (70), Expect = 0.37
Identities = 36/123 (29%), Positives = 46/123 (37%), Gaps = 18/123 (14%)
Query: 40 PKSSFPLPRAFIPVGSNFQPKTSSHGFPVTLG--GAQGQAVPGGLHSGNHNIDPARRKWG 97
P+ + +P P+G P GFP + G G+ G P G+ + N
Sbjct: 441 PRGAPGIPGTRGPIGPPGIP-----GFPGSKGDPGSPGPPGPAGIATKGLN--------- 486
Query: 98 GQAAGVPGPGGDSSLSDELGAKLSL-PPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPG 156
G PGP G S E G PPG P + P F+ A PSL P S G
Sbjct: 487 -GPTGPPGPPGPRGHSGEPGLPGPPGPPGPPGQAVMPEGFIKAGQRPSLSGTPLVSANQG 545
Query: 157 PRG 159
G
Sbjct: 546 VTG 548
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 40.8 bits (94), Expect = 6e-04
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 32/140 (22%)
Query: 65 GFPVTLG--------GAQG-QAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDE 115
GFP T G GA G Q +PG + P + G G PGP G + E
Sbjct: 99 GFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG-LQGPPGPPGIPGMKGE 157
Query: 116 LGA----KLSLPPGSPHRCPPPGLFLLA-----------PGPPSLDLPPTHSPGPGPRGE 160
G+ L P G+P PPG+ L PGPP L PP PGP+G
Sbjct: 158 PGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGN 217
Query: 161 LLVSSR-------PQGLSGP 173
+ ++ + QGL GP
Sbjct: 218 MGLNFQGPKGEKGEQGLQGP 237
Score = 37.0 bits (84), Expect = 0.009
Identities = 55/181 (30%), Positives = 66/181 (36%), Gaps = 34/181 (18%)
Query: 25 PPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQP----KTSSHGFPVTLG--------- 71
PP +P SP +P A P+G P K + GFP T G
Sbjct: 850 PPGLDVPGPPGERGSPG----IPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPG 905
Query: 72 -----GAQGQA-VPG-----GLHSGNHNIDPARRKWGGQAAGVPGPGG--DSSLSDELGA 118
G G++ VPG GL P K G+PGP G D +L G
Sbjct: 906 PPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Query: 119 KLSLP-PGSPHRCPPPGLFLLA--PGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGPAS 175
K PG P P G L PG P L P PGP+G + +P GL GP
Sbjct: 966 KGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQP-GLIGPPG 1024
Query: 176 L 176
L
Sbjct: 1025 L 1025
Score = 34.7 bits (78), Expect = 0.044
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLA-----PGPPSLDLPPTHSPGPG 156
G PGP G L PPG P PGL + PGPP LD+P PG
Sbjct: 805 GQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGP----PG 860
Query: 157 PRGELLVSSRPQGLSGPAS 175
RG + P + P S
Sbjct: 861 ERGSPGIPGAPGPIGPPGS 879
Score = 34.3 bits (77), Expect = 0.057
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSP---------HRCPPPGLFLLAPGPPSLDLPPTHS 152
G PG G L GA + PPG P PPG+ + PGPP LD P
Sbjct: 374 GFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISI--PGPPGLDGQPGAP 431
Query: 153 PGPGPRG 159
PGP G
Sbjct: 432 GLPGPPG 438
Score = 34.3 bits (77), Expect = 0.057
Identities = 42/163 (25%), Positives = 51/163 (31%), Gaps = 29/163 (17%)
Query: 26 PPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGFPVTLGGAQGQAVPGGLHSG 85
PP G + P P G P S G P G +PG
Sbjct: 381 PPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 86 NHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK--------------LSLPPGSPHRCP 131
+I P+ G PG GD L E G K +S PPG
Sbjct: 441 GPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ----- 495
Query: 132 PPGLFLLAPGPPSLDLPPTHSPGPGPRGE--LLVSSRPQGLSG 172
PG P L PP PG +GE ++ P+GL G
Sbjct: 496 --------PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPG 530
Score = 34.3 bits (77), Expect = 0.057
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 27/102 (26%)
Query: 65 GFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSL 122
G P G Q +PG DP + GQ G PGP G+ L
Sbjct: 973 GIPGVSGPKGYQGLPG---------DPGQPGLSGQPGLPGPPGPKGNPGL---------- 1013
Query: 123 PPGSPHRCPPPGLF-----LLAPGPPSLDLPPTHSPGPGPRG 159
PG P PPGL + PGP ++ PP S PG G
Sbjct: 1014 -PGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPG 1054
Score = 32.3 bits (72), Expect = 0.22
Identities = 40/131 (30%), Positives = 48/131 (36%), Gaps = 17/131 (12%)
Query: 52 PVGSNFQPKTSSHGFPVTLG--GAQGQAVPGGLHS--GNHNIDPARRKWGGQAAGVPGPG 107
P G +P G P G G GQ GGL GN + + + G G PG
Sbjct: 1177 PAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFH--GFPGVQ 1234
Query: 108 GDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGP------PSLDLPPTHSPGPGPRGEL 161
G G L P G+P PPG PGP P + PP G +GE
Sbjct: 1235 GPPGPPGSPGPALEGPKGNPGPQGPPG----RPGPTGFQGLPGPEGPPGLPGNGGIKGEK 1290
Query: 162 LVSSRPQGLSG 172
+P GL G
Sbjct: 1291 GNPGQP-GLPG 1300
Score = 31.6 bits (70), Expect = 0.37
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 68 VTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSP 127
+T G +G GL NI P G G PGP G+ + G PG P
Sbjct: 596 ITFKGERGPPGNPGLPGLPGNIGPM----GPPGFGPPGPVGEKGIQGVAGNPGQ--PGIP 649
Query: 128 HRCPPPGLFLLAPGPPSLDLPPTHSPG-PGPRGELLVSSRPQGLSGPASL 176
PG + PG P L PG PG G++ + P GL G L
Sbjct: 650 GPKGDPGQTITQPGKPGL-------PGNPGRDGDVGLPGDP-GLPGQPGL 691
Score = 31.6 bits (70), Expect = 0.37
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGS---PHRCPPPGLFLLAPGPPS---LDLPPTHSPGP 155
G+PG G+ + G L PPG P PPG APG P L+ PP P
Sbjct: 693 GIPGSKGEPGIP---GIGLPGPPGPKGFPGIPGPPG----APGTPGRIGLEGPPGPPGFP 745
Query: 156 GPRGE 160
GP+GE
Sbjct: 746 GPKGE 750
Score = 31.6 bits (70), Expect = 0.37
Identities = 34/89 (38%), Positives = 39/89 (43%), Gaps = 24/89 (26%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGL--FLLA---------PGPPSLDLPP- 149
G PGP G E G L PPG PPGL F A PGPP PP
Sbjct: 737 GPPGPPGFPGPKGEPGFALPGPPG------PPGLPGFKGALGPKGDRGFPGPPG---PPG 787
Query: 150 -THSPG-PGPRGELLVSSRPQGLSGPASL 176
T G PGP+G++ + +P G GP L
Sbjct: 788 RTGLDGLPGPKGDVGPNGQP-GPMGPPGL 815
Score = 31.6 bits (70), Expect = 0.37
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 79 PGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLF 136
PG + G H P G+ G+PGP G + G PPG P G
Sbjct: 1148 PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG 1207
Query: 137 LLAPGPPSLDLPPTHSPG-PGPRGELLVSSRPQGLSGP 173
L PG P +PG PGP+GE P G+ GP
Sbjct: 1208 GL-PGIPG-------NPGLPGPKGEPGFHGFP-GVQGP 1236
Score = 31.6 bits (70), Expect = 0.37
Identities = 47/169 (27%), Positives = 62/169 (36%), Gaps = 31/169 (18%)
Query: 13 PEGSARLQGHFRPPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGFPVTLGG 72
P+G+ QG PP + P + P+ LP G P G P L G
Sbjct: 1250 PKGNPGPQG---PPGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNP--GQPGLP-GLPG 1303
Query: 73 AQGQAVPGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSLPPGSPHRC 130
+G P GL +P R G G+PG G + G PGS
Sbjct: 1304 LKGDQGPPGLQG-----NPGRPGLNGMKGDPGLPGVPGFPGMKGPSGV-----PGSAGPE 1353
Query: 131 PPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLV---SSRPQGLSGPASL 176
PGL + PGPP L PGP G+ ++ + P G+ G L
Sbjct: 1354 GEPGL-IGPPGPPGL---------PGPSGQSIIIKGDAGPPGIPGQPGL 1392
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 40.8 bits (94), Expect = 6e-04
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 32/140 (22%)
Query: 65 GFPVTLG--------GAQG-QAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDE 115
GFP T G GA G Q +PG + P + G G PGP G + E
Sbjct: 99 GFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG-LQGPPGPPGIPGMKGE 157
Query: 116 LGA----KLSLPPGSPHRCPPPGLFLLA-----------PGPPSLDLPPTHSPGPGPRGE 160
G+ L P G+P PPG+ L PGPP L PP PGP+G
Sbjct: 158 PGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGN 217
Query: 161 LLVSSR-------PQGLSGP 173
+ ++ + QGL GP
Sbjct: 218 MGLNFQGPKGEKGEQGLQGP 237
Score = 37.0 bits (84), Expect = 0.009
Identities = 55/181 (30%), Positives = 66/181 (36%), Gaps = 34/181 (18%)
Query: 25 PPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQP----KTSSHGFPVTLG--------- 71
PP +P SP +P A P+G P K + GFP T G
Sbjct: 850 PPGLDVPGPPGERGSPG----IPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPG 905
Query: 72 -----GAQGQA-VPG-----GLHSGNHNIDPARRKWGGQAAGVPGPGG--DSSLSDELGA 118
G G++ VPG GL P K G+PGP G D +L G
Sbjct: 906 PPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Query: 119 KLSLP-PGSPHRCPPPGLFLLA--PGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGPAS 175
K PG P P G L PG P L P PGP+G + +P GL GP
Sbjct: 966 KGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQP-GLIGPPG 1024
Query: 176 L 176
L
Sbjct: 1025 L 1025
Score = 35.0 bits (79), Expect = 0.034
Identities = 39/125 (31%), Positives = 47/125 (37%), Gaps = 11/125 (8%)
Query: 52 PVGSNFQPKTSSHGFPVTLG--GAQGQAVPGGLHS--GNHNIDPARRKWGGQAAGVPGPG 107
P G +P G P G G GQ GGL GN + + + G G PG
Sbjct: 1177 PAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFH--GFPGVQ 1234
Query: 108 GDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRP 167
G G L P G+P PPG PG P + PP G +GE +P
Sbjct: 1235 GPPGPPGSPGPALEGPKGNPGPQGPPG----RPGLPGPEGPPGLPGNGGIKGEKGNPGQP 1290
Query: 168 QGLSG 172
GL G
Sbjct: 1291 -GLPG 1294
Score = 34.7 bits (78), Expect = 0.044
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLA-----PGPPSLDLPPTHSPGPG 156
G PGP G L PPG P PGL + PGPP LD+P PG
Sbjct: 805 GQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGP----PG 860
Query: 157 PRGELLVSSRPQGLSGPAS 175
RG + P + P S
Sbjct: 861 ERGSPGIPGAPGPIGPPGS 879
Score = 34.3 bits (77), Expect = 0.057
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSP---------HRCPPPGLFLLAPGPPSLDLPPTHS 152
G PG G L GA + PPG P PPG+ + PGPP LD P
Sbjct: 374 GFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISI--PGPPGLDGQPGAP 431
Query: 153 PGPGPRG 159
PGP G
Sbjct: 432 GLPGPPG 438
Score = 34.3 bits (77), Expect = 0.057
Identities = 42/163 (25%), Positives = 51/163 (31%), Gaps = 29/163 (17%)
Query: 26 PPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGFPVTLGGAQGQAVPGGLHSG 85
PP G + P P G P S G P G +PG
Sbjct: 381 PPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 86 NHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK--------------LSLPPGSPHRCP 131
+I P+ G PG GD L E G K +S PPG
Sbjct: 441 GPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ----- 495
Query: 132 PPGLFLLAPGPPSLDLPPTHSPGPGPRGE--LLVSSRPQGLSG 172
PG P L PP PG +GE ++ P+GL G
Sbjct: 496 --------PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPG 530
Score = 34.3 bits (77), Expect = 0.057
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 27/102 (26%)
Query: 65 GFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSL 122
G P G Q +PG DP + GQ G PGP G+ L
Sbjct: 973 GIPGVSGPKGYQGLPG---------DPGQPGLSGQPGLPGPPGPKGNPGL---------- 1013
Query: 123 PPGSPHRCPPPGLF-----LLAPGPPSLDLPPTHSPGPGPRG 159
PG P PPGL + PGP ++ PP S PG G
Sbjct: 1014 -PGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPG 1054
Score = 31.6 bits (70), Expect = 0.37
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 68 VTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSP 127
+T G +G GL NI P G G PGP G+ + G PG P
Sbjct: 596 ITFKGERGPPGNPGLPGLPGNIGPM----GPPGFGPPGPVGEKGIQGVAGNPGQ--PGIP 649
Query: 128 HRCPPPGLFLLAPGPPSLDLPPTHSPG-PGPRGELLVSSRPQGLSGPASL 176
PG + PG P L PG PG G++ + P GL G L
Sbjct: 650 GPKGDPGQTITQPGKPGL-------PGNPGRDGDVGLPGDP-GLPGQPGL 691
Score = 31.6 bits (70), Expect = 0.37
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGS---PHRCPPPGLFLLAPGPPS---LDLPPTHSPGP 155
G+PG G+ + G L PPG P PPG APG P L+ PP P
Sbjct: 693 GIPGSKGEPGIP---GIGLPGPPGPKGFPGIPGPPG----APGTPGRIGLEGPPGPPGFP 745
Query: 156 GPRGE 160
GP+GE
Sbjct: 746 GPKGE 750
Score = 31.6 bits (70), Expect = 0.37
Identities = 34/89 (38%), Positives = 39/89 (43%), Gaps = 24/89 (26%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGL--FLLA---------PGPPSLDLPP- 149
G PGP G E G L PPG PPGL F A PGPP PP
Sbjct: 737 GPPGPPGFPGPKGEPGFALPGPPG------PPGLPGFKGALGPKGDRGFPGPPG---PPG 787
Query: 150 -THSPG-PGPRGELLVSSRPQGLSGPASL 176
T G PGP+G++ + +P G GP L
Sbjct: 788 RTGLDGLPGPKGDVGPNGQP-GPMGPPGL 815
Score = 31.6 bits (70), Expect = 0.37
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 79 PGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLF 136
PG + G H P G+ G+PGP G + G PPG P G
Sbjct: 1148 PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG 1207
Query: 137 LLAPGPPSLDLPPTHSPG-PGPRGELLVSSRPQGLSGP 173
L PG P +PG PGP+GE P G+ GP
Sbjct: 1208 GL-PGIPG-------NPGLPGPKGEPGFHGFP-GVQGP 1236
Score = 30.8 bits (68), Expect = 0.63
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 25/112 (22%)
Query: 70 LGGAQGQAVPGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSLPPGSP 127
L G +G P GL +P R G G+PG G + G PGS
Sbjct: 1295 LPGLKGDQGPPGLQG-----NPGRPGLNGMKGDPGLPGVPGFPGMKGPSGV-----PGSA 1344
Query: 128 HRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLV---SSRPQGLSGPASL 176
PGL + PGPP L PGP G+ ++ + P G+ G L
Sbjct: 1345 GPEGEPGL-IGPPGPPGL---------PGPSGQSIIIKGDAGPPGIPGQPGL 1386
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 40.8 bits (94), Expect = 6e-04
Identities = 44/140 (31%), Positives = 56/140 (40%), Gaps = 32/140 (22%)
Query: 65 GFPVTLG--------GAQG-QAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDE 115
GFP T G GA G Q +PG + P + G G PGP G + E
Sbjct: 99 GFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG-LQGPPGPPGIPGMKGE 157
Query: 116 LGA----KLSLPPGSPHRCPPPGLFLLA-----------PGPPSLDLPPTHSPGPGPRGE 160
G+ L P G+P PPG+ L PGPP L PP PGP+G
Sbjct: 158 PGSIIMSSLPGPKGNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGN 217
Query: 161 LLVSSR-------PQGLSGP 173
+ ++ + QGL GP
Sbjct: 218 MGLNFQGPKGEKGEQGLQGP 237
Score = 37.0 bits (84), Expect = 0.009
Identities = 55/181 (30%), Positives = 66/181 (36%), Gaps = 34/181 (18%)
Query: 25 PPPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQP----KTSSHGFPVTLG--------- 71
PP +P SP +P A P+G P K + GFP T G
Sbjct: 850 PPGLDVPGPPGERGSPG----IPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMGPPG 905
Query: 72 -----GAQGQA-VPG-----GLHSGNHNIDPARRKWGGQAAGVPGPGG--DSSLSDELGA 118
G G++ VPG GL P K G+PGP G D +L G
Sbjct: 906 PPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGE 965
Query: 119 KLSLP-PGSPHRCPPPGLFLLA--PGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGPAS 175
K PG P P G L PG P L P PGP+G + +P GL GP
Sbjct: 966 KGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQP-GLIGPPG 1024
Query: 176 L 176
L
Sbjct: 1025 L 1025
Score = 34.7 bits (78), Expect = 0.044
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLA-----PGPPSLDLPPTHSPGPG 156
G PGP G L PPG P PGL + PGPP LD+P PG
Sbjct: 805 GQPGPMGPPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGP----PG 860
Query: 157 PRGELLVSSRPQGLSGPAS 175
RG + P + P S
Sbjct: 861 ERGSPGIPGAPGPIGPPGS 879
Score = 34.3 bits (77), Expect = 0.057
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSP---------HRCPPPGLFLLAPGPPSLDLPPTHS 152
G PG G L GA + PPG P PPG+ + PGPP LD P
Sbjct: 374 GFPGIQGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISI--PGPPGLDGQPGAP 431
Query: 153 PGPGPRG 159
PGP G
Sbjct: 432 GLPGPPG 438
Score = 34.3 bits (77), Expect = 0.057
Identities = 42/163 (25%), Positives = 51/163 (31%), Gaps = 29/163 (17%)
Query: 26 PPKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGFPVTLGGAQGQAVPGGLHSG 85
PP G + P P G P S G P G +PG
Sbjct: 381 PPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPA 440
Query: 86 NHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK--------------LSLPPGSPHRCP 131
+I P+ G PG GD L E G K +S PPG
Sbjct: 441 GPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQ----- 495
Query: 132 PPGLFLLAPGPPSLDLPPTHSPGPGPRGE--LLVSSRPQGLSG 172
PG P L PP PG +GE ++ P+GL G
Sbjct: 496 --------PGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPG 530
Score = 34.3 bits (77), Expect = 0.057
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 27/102 (26%)
Query: 65 GFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSL 122
G P G Q +PG DP + GQ G PGP G+ L
Sbjct: 973 GIPGVSGPKGYQGLPG---------DPGQPGLSGQPGLPGPPGPKGNPGL---------- 1013
Query: 123 PPGSPHRCPPPGLF-----LLAPGPPSLDLPPTHSPGPGPRG 159
PG P PPGL + PGP ++ PP S PG G
Sbjct: 1014 -PGQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPG 1054
Score = 32.3 bits (72), Expect = 0.22
Identities = 40/127 (31%), Positives = 47/127 (37%), Gaps = 12/127 (9%)
Query: 52 PVGSNFQPKTSSHGFPVTLG--GAQGQAVPGGLHS--GNHNIDPARRKWGGQAAGVPGPG 107
P G +P G P G G GQ GGL GN + + + G G PG
Sbjct: 1177 PAGQKGEPGQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFH--GFPGVQ 1234
Query: 108 GDSSLSDELGAKLSLPPGSPHRCPPPGL--FLLAPGPPSLDLPPTHSPGPGPRGELLVSS 165
G G L P G+P PPG F PGP PP G +GE
Sbjct: 1235 GPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEG---PPGLPGNGGIKGEKGNPG 1291
Query: 166 RPQGLSG 172
+P GL G
Sbjct: 1292 QP-GLPG 1297
Score = 31.6 bits (70), Expect = 0.37
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 68 VTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSP 127
+T G +G GL NI P G G PGP G+ + G PG P
Sbjct: 596 ITFKGERGPPGNPGLPGLPGNIGPM----GPPGFGPPGPVGEKGIQGVAGNPGQ--PGIP 649
Query: 128 HRCPPPGLFLLAPGPPSLDLPPTHSPG-PGPRGELLVSSRPQGLSGPASL 176
PG + PG P L PG PG G++ + P GL G L
Sbjct: 650 GPKGDPGQTITQPGKPGL-------PGNPGRDGDVGLPGDP-GLPGQPGL 691
Score = 31.6 bits (70), Expect = 0.37
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGS---PHRCPPPGLFLLAPGPPS---LDLPPTHSPGP 155
G+PG G+ + G L PPG P PPG APG P L+ PP P
Sbjct: 693 GIPGSKGEPGIP---GIGLPGPPGPKGFPGIPGPPG----APGTPGRIGLEGPPGPPGFP 745
Query: 156 GPRGE 160
GP+GE
Sbjct: 746 GPKGE 750
Score = 31.6 bits (70), Expect = 0.37
Identities = 34/89 (38%), Positives = 39/89 (43%), Gaps = 24/89 (26%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGL--FLLA---------PGPPSLDLPP- 149
G PGP G E G L PPG PPGL F A PGPP PP
Sbjct: 737 GPPGPPGFPGPKGEPGFALPGPPG------PPGLPGFKGALGPKGDRGFPGPPG---PPG 787
Query: 150 -THSPG-PGPRGELLVSSRPQGLSGPASL 176
T G PGP+G++ + +P G GP L
Sbjct: 788 RTGLDGLPGPKGDVGPNGQP-GPMGPPGL 815
Score = 31.6 bits (70), Expect = 0.37
Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 79 PGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLF 136
PG + G H P G+ G+PGP G + G PPG P G
Sbjct: 1148 PGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPGLSGQKGDG 1207
Query: 137 LLAPGPPSLDLPPTHSPG-PGPRGELLVSSRPQGLSGP 173
L PG P +PG PGP+GE P G+ GP
Sbjct: 1208 GL-PGIPG-------NPGLPGPKGEPGFHGFP-GVQGP 1236
Score = 30.8 bits (68), Expect = 0.63
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 25/112 (22%)
Query: 70 LGGAQGQAVPGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSLPPGSP 127
L G +G P GL +P R G G+PG G + G PGS
Sbjct: 1298 LPGLKGDQGPPGLQG-----NPGRPGLNGMKGDPGLPGVPGFPGMKGPSGV-----PGSA 1347
Query: 128 HRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLV---SSRPQGLSGPASL 176
PGL + PGPP L PGP G+ ++ + P G+ G L
Sbjct: 1348 GPEGEPGL-IGPPGPPGL---------PGPSGQSIIIKGDAGPPGIPGQPGL 1389
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 40.4 bits (93), Expect = 8e-04
Identities = 36/116 (31%), Positives = 41/116 (35%), Gaps = 19/116 (16%)
Query: 67 PVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGS 126
P G G A P G+ P + G+PG G + G PPG
Sbjct: 649 PPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPG-----PPGE 703
Query: 127 PHRCPPPGLFLLAPGPPSLDLPPTH------SPGPGPRGELLVSSRPQGLSGPASL 176
P + PGL PGP PP S PGPRGE S GL G L
Sbjct: 704 PGKAGEPGL----PGPEGARGPPGFKGHTGDSGAPGPRGE----SGAMGLPGQEGL 751
Score = 32.7 bits (73), Expect = 0.17
Identities = 29/75 (38%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 102 GVPGPGGDSSLSDELGAK--LSLP--PGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGP 157
G PG G L LG K P PGSP PG+ + GPP PP PG
Sbjct: 469 GEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPGIGVA--GPPGPSGPPGDKGSPGS 526
Query: 158 RGELLVSSRPQGLSG 172
RG L PQG +G
Sbjct: 527 RG-LPGFPGPQGPAG 540
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 40.4 bits (93), Expect = 8e-04
Identities = 36/116 (31%), Positives = 41/116 (35%), Gaps = 19/116 (16%)
Query: 67 PVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGS 126
P G G A P G+ P + G+PG G + G PPG
Sbjct: 1202 PPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPG-----PPGE 1256
Query: 127 PHRCPPPGLFLLAPGPPSLDLPPTH------SPGPGPRGELLVSSRPQGLSGPASL 176
P + PGL PGP PP S PGPRGE S GL G L
Sbjct: 1257 PGKAGEPGL----PGPEGARGPPGFKGHTGDSGAPGPRGE----SGAMGLPGQEGL 1304
Score = 34.7 bits (78), Expect = 0.044
Identities = 35/105 (33%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 70 LGGAQGQAVPGGLHSGNHNIDPARRKWGGQAA-GVPGPGGDSSLSDELGAKLSLPPGSPH 128
L G QG P G H G AR G + G PG G ++G PPG P
Sbjct: 655 LKGEQGAPGPRG-HQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMG-----PPGIPG 708
Query: 129 RCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
G PGPP + PP PG GE+ +P G GP
Sbjct: 709 LLGLQG----PPGPPGVPGPPGPGGSPGLPGEIGFPGKP-GPPGP 748
Score = 28.5 bits (62), Expect = 3.1
Identities = 29/92 (31%), Positives = 35/92 (38%), Gaps = 8/92 (8%)
Query: 72 GAQGQAVPGGLHSGNHNIDPARRKWGGQ--AAGVPGPGGDSSLSDELGAKLSL-PPGSPH 128
G G P G G+ I P + G+ + G+PGP G G L PG P
Sbjct: 505 GPVGAPGPKG-EKGDVGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRGEPGELGEPGLPG 563
Query: 129 RCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGE 160
G GPP L PP PG +GE
Sbjct: 564 EVGMRG----PQGPPGLPGPPGRVGAPGLQGE 591
Score = 28.5 bits (62), Expect = 3.1
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 18/58 (31%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
G PGPGG L E+G PG P GPP PP GP G
Sbjct: 723 GPPGPGGSPGLPGEIGF-----PGKP-------------GPPGPTGPPGKDGPNGPPG 762
Score = 28.5 bits (62), Expect = 3.1
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 124 PGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSG 172
PGSP PG+ + GPP PP PG RG L PQG +G
Sbjct: 1033 PGSPGSRGDPGIGVA--GPPGPSGPPGDKGSPGSRG-LPGFPGPQGPAG 1078
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 79 PGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLP----PGSPHRCP--- 131
PG HS + K + P L G SLP PG +R
Sbjct: 358 PGAAHSAPRPFSDSLHKSLTKILPERPPSAQDGLGSTRGPPSSLPQRHFPGQAYRASGVD 417
Query: 132 ----PPGLFLLAPGPPSLDLP----PTHSPGPGPRGELLVSSRPQGLSGPAS 175
PP L APGPP LP PT +P P P G L ++R +G S
Sbjct: 418 TSPGPPDTELAAPGPPPARLPQLWDPTAAPYPTPPGGPLAATRSMFFNGQPS 469
Score = 29.6 bits (65), Expect = 1.4
Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 4/115 (3%)
Query: 65 GFPVTLGGAQGQAVPGGLHSGNHNIDPA-RRKWGGQAAGVPGPGGDSSLSDELGAKLSLP 123
G P GG+QG G G PA R GG A G + L ++ P
Sbjct: 509 GGPEWQGGSQGALGTAGKTPGPREKLPAVRSSQGGSPALFTYNGMTDPGAQPLFFGVAQP 568
Query: 124 PGSPH---RCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGPAS 175
SPH PPP + +P L P T++ G +SS P S S
Sbjct: 569 QVSPHGTPSLPPPRVVGASPSESPLPSPATNTAGSTCSSLSPMSSSPANPSSEES 623
Score = 26.9 bits (58), Expect = 9.2
Identities = 25/84 (29%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 100 AAGVPGPGGDSSLSDELGAKLSLPPGSP---------HRCPPPGLFLLAPGPPSLDLPPT 150
AA P P L D A PPG P + P PG L P L P
Sbjct: 428 AAPGPPPARLPQLWDPTAAPYPTPPGGPLAATRSMFFNGQPSPGQRLCLPQSAPLPWPQV 487
Query: 151 -HSPGPGPRGELLVSSRPQGLSGP 173
+ P P G ++S P GP
Sbjct: 488 LPTARPSPHGMEMLSRLPFPAGGP 511
Score = 26.9 bits (58), Expect = 9.2
Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 124 PGSPHRCPPPGLF----LLAPGPPSLDLP-----PTHSPGPGPRGELLVSSRPQGLSGP 173
P + CPPP L LA G L P + PG G LL + P G S P
Sbjct: 3516 PSNHQECPPPSLSPFPAALADGRGDCALDGALERPENEASPGSPGPLLQQALPLGASLP 3574
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 40.0 bits (92), Expect = 0.001
Identities = 41/114 (35%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 67 PVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAA--GVPGPGGDSSLSDELGAKLSLPP 124
P L G G +PG G + P + G+ G PGP GD L + G P
Sbjct: 160 PPGLPGPSGITIPG--KPGAQGV-PGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLP 216
Query: 125 GSPHR--CP-PPGLFLLAPGPPSLDLPPTHS-PG-PGPRGELLVSSRPQGLSGP 173
G+P + P PPGL PGP L P PG PG +GE S P G+ GP
Sbjct: 217 GAPGQGGAPGPPGL----PGPAGLGKPGLDGLPGAPGDKGE----SGPPGVPGP 262
Score = 37.4 bits (85), Expect = 0.007
Identities = 35/86 (40%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 100 AAGVPGPGGDSSLSDELGAKLSLPPG--SPHRCPPPGLFLLAPGPPSLDLPPTHSPG--- 154
AAG+PGP G S E G + PPG P PGL PGP D P PG
Sbjct: 285 AAGLPGPQGPSGAKGEPGTR--GPPGLIGPTGYGMPGL----PGPKG-DRGPAGVPGLLG 337
Query: 155 ----PGPRGELLVSSRPQGLSGPASL 176
PG GE PQGL GP L
Sbjct: 338 DRGEPGEDGE-PGEQGPQGLGGPPGL 362
Score = 33.1 bits (74), Expect = 0.13
Identities = 35/103 (33%), Positives = 37/103 (35%), Gaps = 18/103 (17%)
Query: 67 PVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGS 126
P LGG G GL P G GVPG GD S G PG
Sbjct: 353 PQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAG-----KPGV 407
Query: 127 PHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQG 169
P PG A GPP PT GP+GE + RP G
Sbjct: 408 PGERGLPG----AHGPPG----PT-----GPKGEPGFTGRPGG 437
Score = 32.7 bits (73), Expect = 0.17
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 24/146 (16%)
Query: 15 GSARLQGHFRPPPKTIPAKGNVIFSPKSSFP-LPRAFIPVGSNFQPKTSSHGFPVTLGGA 73
G L G PP T P KG F+ + P + A G P P + G
Sbjct: 409 GERGLPGAHGPPGPTGP-KGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGL 467
Query: 74 QGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPP 133
QG A P I P G+PGP G+ + PG+ PP
Sbjct: 468 QGPAGP---------IGPQGLPGLKGEPGLPGPPGEGRAGE---------PGTAGPTGPP 509
Query: 134 GLFLLAPGPPSLDLPPTHSPGPGPRG 159
G+ PG P + PP PGP G
Sbjct: 510 GV----PGSPGITGPPGPPGPPGPPG 531
Score = 31.2 bits (69), Expect = 0.49
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLL-----APGPPSLDLPPTHSPGPG 156
G PGP G S +G + PPG P + PPG L G L PP PG
Sbjct: 109 GQPGPAGPPGFS-RMGK--AGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG 165
Query: 157 PRGELLVSSRP--QGLSGP 173
P G + + +P QG+ GP
Sbjct: 166 PSG-ITIPGKPGAQGVPGP 183
Score = 29.6 bits (65), Expect = 1.4
Identities = 29/86 (33%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPP----------TH 151
G+ GP G L G + PG+ PPG F PGP PP
Sbjct: 153 GLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPG-FQGEPGPQGEPGPPGDRGLKGDNGVG 211
Query: 152 SPG-PGPRGELLVSSRPQGLSGPASL 176
PG PG G+ + P GL GPA L
Sbjct: 212 QPGLPGAPGQ-GGAPGPPGLPGPAGL 236
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 29/92 (31%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTH---------- 151
G+PGP G+ +LS E G + PPG P PG +PGP PP +
Sbjct: 578 GLPGPKGELALSGEKGDQG--PPGDPGS---PG----SPGPAGPAGPPGYGPQGEPGLQG 628
Query: 152 ------SPGP----GPRGELLVSSRPQGLSGP 173
+PGP GPRGEL VS+ G GP
Sbjct: 629 TQGVPGAPGPPGEAGPRGELSVSTPVPGPPGP 660
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/121 (33%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 72 GAQGQAVPGGLHSGNHNIDPARRKWG---GQAAGVPGPGGDSSLSDELGAKLSL----PP 124
G G+A GL G H + + + G G G PGP GD L ++G K + PP
Sbjct: 1033 GFPGRAGRPGL-PGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPP 1091
Query: 125 GSPHRCPPPGLFLLAPGPPSLDLPPTHSPG----PGPRGELLVSS-----RPQGLSGPAS 175
G P G APG P SPG PGP G+L P G+ GP
Sbjct: 1092 GHLGPAGPEG----APGSPG-------SPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPG 1140
Query: 176 L 176
L
Sbjct: 1141 L 1141
Score = 33.5 bits (75), Expect = 0.098
Identities = 36/112 (32%), Positives = 44/112 (39%), Gaps = 27/112 (24%)
Query: 68 VTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQA--AGVPG--PGGDSSLSDELGAKLSLP 123
+ L G +G P G DP G A AG PG P G+ L G +
Sbjct: 586 LALSGEKGDQGPPG--------DPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA-- 635
Query: 124 PGSPHRCPPPGLFLLA---PGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSG 172
PG P P G ++ PGPP PP H PGP+G P G+ G
Sbjct: 636 PGPPGEAGPRGELSVSTPVPGPPGPPGPPGH---PGPQG-------PPGIPG 677
Score = 31.6 bits (70), Expect = 0.37
Identities = 42/165 (25%), Positives = 50/165 (30%), Gaps = 44/165 (26%)
Query: 46 LPRAFIPVGSNFQPKTSSHGFPVTLG----------------GAQGQAVPGGLHSGNHNI 89
LP A IP + + S G P G G+ G P G ++
Sbjct: 1229 LPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDM 1288
Query: 90 DPARRKWGGQAAGVPGPGGDSSLSDELGAKLSL----------PPGSPHRCPPPGL---- 135
P R G+PGP GD G K PPG PPG+
Sbjct: 1289 GPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDP 1348
Query: 136 -------FLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
+PGPP P PGP G P G GP
Sbjct: 1349 GTLKIISLPGSPGPPGTPGEPGMQGEPGPPG-------PPGNLGP 1386
Score = 30.4 bits (67), Expect = 0.83
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 65 GFPVTLG-----GAQGQ-AVPGGLHSGNHNIDPARRKWGGQAA-GVPGPGGDSSLSDELG 117
GFP T G G G+ +PG +PA GG G PG G+S E+G
Sbjct: 712 GFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIG 771
Query: 118 AKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGE 160
PG P PG PG LD P PGP GE
Sbjct: 772 L-----PGLPGL---PG----TPGNEGLDGPRGDPGQPGPPGE 802
Score = 30.0 bits (66), Expect = 1.1
Identities = 38/140 (27%), Positives = 47/140 (33%), Gaps = 33/140 (23%)
Query: 63 SHGFPVTLG-----GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELG 117
+ GFP +G G +G P G D + K G PGP G G
Sbjct: 316 NRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSG 375
Query: 118 AKLSLPPGSPHRCPP--------PGL-------------FLLAPGPP----SLDLPPTHS 152
PGSP P PGL + PG P S LP +
Sbjct: 376 P--PGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPG 433
Query: 153 PGPGPRGELLVSSRPQGLSG 172
P PGP G+++ P G G
Sbjct: 434 P-PGPPGDIVFRKGPPGDHG 452
Score = 29.6 bits (65), Expect = 1.4
Identities = 33/92 (35%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 93 RRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTH- 151
R + G A G PG G + S L PGSP PPG + GPP P +
Sbjct: 406 RGRPGKDAMGTPGSPGCAG-SPGL-------PGSPGPPGPPGDIVFRKGPPGDHGLPGYL 457
Query: 152 -SPG----PGPRGE--LLVSSRPQGLSGPASL 176
SPG GP+GE LL + P + GP L
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPY-IPGPPGL 488
Score = 27.7 bits (60), Expect = 5.4
Identities = 39/146 (26%), Positives = 49/146 (33%), Gaps = 13/146 (8%)
Query: 40 PKSSFPLPRAFIPVG--SNFQPKTSSHGFPVTLGGAQGQAVPGG-----LHSGNHNIDPA 92
P F P A P G + + H + G G P G L ++ D
Sbjct: 199 PPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLK 258
Query: 93 RRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHS 152
K A G PGP G S L E PG P PG + PG P + +
Sbjct: 259 GEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGV-PGFPGSEGVKGNR 317
Query: 153 PGPGPRGELLVSSR-----PQGLSGP 173
PG GE + + P G GP
Sbjct: 318 GFPGLMGEDGIKGQKGDIGPPGFRGP 343
Score = 27.7 bits (60), Expect = 5.4
Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 21/122 (17%)
Query: 65 GFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK----- 119
G P T G +PG G A+ + G + G PGP S +S +G K
Sbjct: 907 GNPGTPGQRGSPGIPGV--KGQRGTPGAKGEQGDK--GNPGP---SEISHVIGDKGEPGL 959
Query: 120 --LSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRP--QGLSG-PA 174
+ PG PG+ PG L P + PGPRG+L + P GL G P
Sbjct: 960 KGFAGNPGEKGNRGVPGM----PGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 175 SL 176
S+
Sbjct: 1016 SM 1017
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 29/92 (31%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTH---------- 151
G+PGP G+ +LS E G + PPG P PG +PGP PP +
Sbjct: 578 GLPGPKGELALSGEKGDQG--PPGDPGS---PG----SPGPAGPAGPPGYGPQGEPGLQG 628
Query: 152 ------SPGP----GPRGELLVSSRPQGLSGP 173
+PGP GPRGEL VS+ G GP
Sbjct: 629 TQGVPGAPGPPGEAGPRGELSVSTPVPGPPGP 660
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/121 (33%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 72 GAQGQAVPGGLHSGNHNIDPARRKWG---GQAAGVPGPGGDSSLSDELGAKLSL----PP 124
G G+A GL G H + + + G G G PGP GD L ++G K + PP
Sbjct: 1033 GFPGRAGRPGL-PGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPP 1091
Query: 125 GSPHRCPPPGLFLLAPGPPSLDLPPTHSPG----PGPRGELLVSS-----RPQGLSGPAS 175
G P G APG P SPG PGP G+L P G+ GP
Sbjct: 1092 GHLGPAGPEG----APGSPG-------SPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPG 1140
Query: 176 L 176
L
Sbjct: 1141 L 1141
Score = 33.5 bits (75), Expect = 0.098
Identities = 36/112 (32%), Positives = 44/112 (39%), Gaps = 27/112 (24%)
Query: 68 VTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQA--AGVPG--PGGDSSLSDELGAKLSLP 123
+ L G +G P G DP G A AG PG P G+ L G +
Sbjct: 586 LALSGEKGDQGPPG--------DPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA-- 635
Query: 124 PGSPHRCPPPGLFLLA---PGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSG 172
PG P P G ++ PGPP PP H PGP+G P G+ G
Sbjct: 636 PGPPGEAGPRGELSVSTPVPGPPGPPGPPGH---PGPQG-------PPGIPG 677
Score = 31.6 bits (70), Expect = 0.37
Identities = 42/165 (25%), Positives = 50/165 (30%), Gaps = 44/165 (26%)
Query: 46 LPRAFIPVGSNFQPKTSSHGFPVTLG----------------GAQGQAVPGGLHSGNHNI 89
LP A IP + + S G P G G+ G P G ++
Sbjct: 1229 LPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDM 1288
Query: 90 DPARRKWGGQAAGVPGPGGDSSLSDELGAKLSL----------PPGSPHRCPPPGL---- 135
P R G+PGP GD G K PPG PPG+
Sbjct: 1289 GPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDP 1348
Query: 136 -------FLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
+PGPP P PGP G P G GP
Sbjct: 1349 GTLKIISLPGSPGPPGTPGEPGMQGEPGPPG-------PPGNLGP 1386
Score = 30.4 bits (67), Expect = 0.83
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 65 GFPVTLG-----GAQGQ-AVPGGLHSGNHNIDPARRKWGGQAA-GVPGPGGDSSLSDELG 117
GFP T G G G+ +PG +PA GG G PG G+S E+G
Sbjct: 712 GFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIG 771
Query: 118 AKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGE 160
PG P PG PG LD P PGP GE
Sbjct: 772 L-----PGLPGL---PG----TPGNEGLDGPRGDPGQPGPPGE 802
Score = 30.0 bits (66), Expect = 1.1
Identities = 38/140 (27%), Positives = 47/140 (33%), Gaps = 33/140 (23%)
Query: 63 SHGFPVTLG-----GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELG 117
+ GFP +G G +G P G D + K G PGP G G
Sbjct: 316 NRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSG 375
Query: 118 AKLSLPPGSPHRCPP--------PGL-------------FLLAPGPP----SLDLPPTHS 152
PGSP P PGL + PG P S LP +
Sbjct: 376 P--PGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPG 433
Query: 153 PGPGPRGELLVSSRPQGLSG 172
P PGP G+++ P G G
Sbjct: 434 P-PGPPGDIVFRKGPPGDHG 452
Score = 29.6 bits (65), Expect = 1.4
Identities = 33/92 (35%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 93 RRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTH- 151
R + G A G PG G + S L PGSP PPG + GPP P +
Sbjct: 406 RGRPGKDAMGTPGSPGCAG-SPGL-------PGSPGPPGPPGDIVFRKGPPGDHGLPGYL 457
Query: 152 -SPG----PGPRGE--LLVSSRPQGLSGPASL 176
SPG GP+GE LL + P + GP L
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPY-IPGPPGL 488
Score = 27.7 bits (60), Expect = 5.4
Identities = 39/146 (26%), Positives = 49/146 (33%), Gaps = 13/146 (8%)
Query: 40 PKSSFPLPRAFIPVG--SNFQPKTSSHGFPVTLGGAQGQAVPGG-----LHSGNHNIDPA 92
P F P A P G + + H + G G P G L ++ D
Sbjct: 199 PPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLK 258
Query: 93 RRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHS 152
K A G PGP G S L E PG P PG + PG P + +
Sbjct: 259 GEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGV-PGFPGSEGVKGNR 317
Query: 153 PGPGPRGELLVSSR-----PQGLSGP 173
PG GE + + P G GP
Sbjct: 318 GFPGLMGEDGIKGQKGDIGPPGFRGP 343
Score = 27.7 bits (60), Expect = 5.4
Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 21/122 (17%)
Query: 65 GFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK----- 119
G P T G +PG G A+ + G + G PGP S +S +G K
Sbjct: 907 GNPGTPGQRGSPGIPGV--KGQRGTPGAKGEQGDK--GNPGP---SEISHVIGDKGEPGL 959
Query: 120 --LSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRP--QGLSG-PA 174
+ PG PG+ PG L P + PGPRG+L + P GL G P
Sbjct: 960 KGFAGNPGEKGNRGVPGM----PGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 175 SL 176
S+
Sbjct: 1016 SM 1017
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 29/92 (31%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTH---------- 151
G+PGP G+ +LS E G + PPG P PG +PGP PP +
Sbjct: 578 GLPGPKGELALSGEKGDQG--PPGDPGS---PG----SPGPAGPAGPPGYGPQGEPGLQG 628
Query: 152 ------SPGP----GPRGELLVSSRPQGLSGP 173
+PGP GPRGEL VS+ G GP
Sbjct: 629 TQGVPGAPGPPGEAGPRGELSVSTPVPGPPGP 660
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/121 (33%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 72 GAQGQAVPGGLHSGNHNIDPARRKWG---GQAAGVPGPGGDSSLSDELGAKLSL----PP 124
G G+A GL G H + + + G G G PGP GD L ++G K + PP
Sbjct: 1033 GFPGRAGRPGL-PGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPP 1091
Query: 125 GSPHRCPPPGLFLLAPGPPSLDLPPTHSPG----PGPRGELLVSS-----RPQGLSGPAS 175
G P G APG P SPG PGP G+L P G+ GP
Sbjct: 1092 GHLGPAGPEG----APGSPG-------SPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPG 1140
Query: 176 L 176
L
Sbjct: 1141 L 1141
Score = 33.5 bits (75), Expect = 0.098
Identities = 36/112 (32%), Positives = 44/112 (39%), Gaps = 27/112 (24%)
Query: 68 VTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQA--AGVPG--PGGDSSLSDELGAKLSLP 123
+ L G +G P G DP G A AG PG P G+ L G +
Sbjct: 586 LALSGEKGDQGPPG--------DPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA-- 635
Query: 124 PGSPHRCPPPGLFLLA---PGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSG 172
PG P P G ++ PGPP PP H PGP+G P G+ G
Sbjct: 636 PGPPGEAGPRGELSVSTPVPGPPGPPGPPGH---PGPQG-------PPGIPG 677
Score = 31.6 bits (70), Expect = 0.37
Identities = 42/165 (25%), Positives = 50/165 (30%), Gaps = 44/165 (26%)
Query: 46 LPRAFIPVGSNFQPKTSSHGFPVTLG----------------GAQGQAVPGGLHSGNHNI 89
LP A IP + + S G P G G+ G P G ++
Sbjct: 1229 LPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDM 1288
Query: 90 DPARRKWGGQAAGVPGPGGDSSLSDELGAKLSL----------PPGSPHRCPPPGL---- 135
P R G+PGP GD G K PPG PPG+
Sbjct: 1289 GPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDP 1348
Query: 136 -------FLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
+PGPP P PGP G P G GP
Sbjct: 1349 GTLKIISLPGSPGPPGTPGEPGMQGEPGPPG-------PPGNLGP 1386
Score = 30.4 bits (67), Expect = 0.83
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 65 GFPVTLG-----GAQGQ-AVPGGLHSGNHNIDPARRKWGGQAA-GVPGPGGDSSLSDELG 117
GFP T G G G+ +PG +PA GG G PG G+S E+G
Sbjct: 712 GFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIG 771
Query: 118 AKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGE 160
PG P PG PG LD P PGP GE
Sbjct: 772 L-----PGLPGL---PG----TPGNEGLDGPRGDPGQPGPPGE 802
Score = 30.0 bits (66), Expect = 1.1
Identities = 38/140 (27%), Positives = 47/140 (33%), Gaps = 33/140 (23%)
Query: 63 SHGFPVTLG-----GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELG 117
+ GFP +G G +G P G D + K G PGP G G
Sbjct: 316 NRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSG 375
Query: 118 AKLSLPPGSPHRCPP--------PGL-------------FLLAPGPP----SLDLPPTHS 152
PGSP P PGL + PG P S LP +
Sbjct: 376 P--PGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPG 433
Query: 153 PGPGPRGELLVSSRPQGLSG 172
P PGP G+++ P G G
Sbjct: 434 P-PGPPGDIVFRKGPPGDHG 452
Score = 29.6 bits (65), Expect = 1.4
Identities = 33/92 (35%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 93 RRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTH- 151
R + G A G PG G + S L PGSP PPG + GPP P +
Sbjct: 406 RGRPGKDAMGTPGSPGCAG-SPGL-------PGSPGPPGPPGDIVFRKGPPGDHGLPGYL 457
Query: 152 -SPG----PGPRGE--LLVSSRPQGLSGPASL 176
SPG GP+GE LL + P + GP L
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPY-IPGPPGL 488
Score = 27.7 bits (60), Expect = 5.4
Identities = 39/146 (26%), Positives = 49/146 (33%), Gaps = 13/146 (8%)
Query: 40 PKSSFPLPRAFIPVG--SNFQPKTSSHGFPVTLGGAQGQAVPGG-----LHSGNHNIDPA 92
P F P A P G + + H + G G P G L ++ D
Sbjct: 199 PPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLK 258
Query: 93 RRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHS 152
K A G PGP G S L E PG P PG + PG P + +
Sbjct: 259 GEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGV-PGFPGSEGVKGNR 317
Query: 153 PGPGPRGELLVSSR-----PQGLSGP 173
PG GE + + P G GP
Sbjct: 318 GFPGLMGEDGIKGQKGDIGPPGFRGP 343
Score = 27.7 bits (60), Expect = 5.4
Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 21/122 (17%)
Query: 65 GFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK----- 119
G P T G +PG G A+ + G + G PGP S +S +G K
Sbjct: 907 GNPGTPGQRGSPGIPGV--KGQRGTPGAKGEQGDK--GNPGP---SEISHVIGDKGEPGL 959
Query: 120 --LSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRP--QGLSG-PA 174
+ PG PG+ PG L P + PGPRG+L + P GL G P
Sbjct: 960 KGFAGNPGEKGNRGVPGM----PGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 175 SL 176
S+
Sbjct: 1016 SM 1017
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 40.0 bits (92), Expect = 0.001
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 29/92 (31%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTH---------- 151
G+PGP G+ +LS E G + PPG P PG +PGP PP +
Sbjct: 578 GLPGPKGELALSGEKGDQG--PPGDPGS---PG----SPGPAGPAGPPGYGPQGEPGLQG 628
Query: 152 ------SPGP----GPRGELLVSSRPQGLSGP 173
+PGP GPRGEL VS+ G GP
Sbjct: 629 TQGVPGAPGPPGEAGPRGELSVSTPVPGPPGP 660
Score = 38.9 bits (89), Expect = 0.002
Identities = 40/121 (33%), Positives = 49/121 (40%), Gaps = 28/121 (23%)
Query: 72 GAQGQAVPGGLHSGNHNIDPARRKWG---GQAAGVPGPGGDSSLSDELGAKLSL----PP 124
G G+A GL G H + + + G G G PGP GD L ++G K + PP
Sbjct: 1033 GFPGRAGRPGL-PGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPP 1091
Query: 125 GSPHRCPPPGLFLLAPGPPSLDLPPTHSPG----PGPRGELLVSS-----RPQGLSGPAS 175
G P G APG P SPG PGP G+L P G+ GP
Sbjct: 1092 GHLGPAGPEG----APGSPG-------SPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPG 1140
Query: 176 L 176
L
Sbjct: 1141 L 1141
Score = 33.5 bits (75), Expect = 0.098
Identities = 36/112 (32%), Positives = 44/112 (39%), Gaps = 27/112 (24%)
Query: 68 VTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQA--AGVPG--PGGDSSLSDELGAKLSLP 123
+ L G +G P G DP G A AG PG P G+ L G +
Sbjct: 586 LALSGEKGDQGPPG--------DPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGA-- 635
Query: 124 PGSPHRCPPPGLFLLA---PGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSG 172
PG P P G ++ PGPP PP H PGP+G P G+ G
Sbjct: 636 PGPPGEAGPRGELSVSTPVPGPPGPPGPPGH---PGPQG-------PPGIPG 677
Score = 31.6 bits (70), Expect = 0.37
Identities = 42/165 (25%), Positives = 50/165 (30%), Gaps = 44/165 (26%)
Query: 46 LPRAFIPVGSNFQPKTSSHGFPVTLG----------------GAQGQAVPGGLHSGNHNI 89
LP A IP + + S G P G G+ G P G ++
Sbjct: 1229 LPGAIIPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDM 1288
Query: 90 DPARRKWGGQAAGVPGPGGDSSLSDELGAKLSL----------PPGSPHRCPPPGL---- 135
P R G+PGP GD G K PPG PPG+
Sbjct: 1289 GPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDP 1348
Query: 136 -------FLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
+PGPP P PGP G P G GP
Sbjct: 1349 GTLKIISLPGSPGPPGTPGEPGMQGEPGPPG-------PPGNLGP 1386
Score = 30.4 bits (67), Expect = 0.83
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 65 GFPVTLG-----GAQGQ-AVPGGLHSGNHNIDPARRKWGGQAA-GVPGPGGDSSLSDELG 117
GFP T G G G+ +PG +PA GG G PG G+S E+G
Sbjct: 712 GFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEIG 771
Query: 118 AKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGE 160
PG P PG PG LD P PGP GE
Sbjct: 772 L-----PGLPGL---PG----TPGNEGLDGPRGDPGQPGPPGE 802
Score = 30.0 bits (66), Expect = 1.1
Identities = 38/140 (27%), Positives = 47/140 (33%), Gaps = 33/140 (23%)
Query: 63 SHGFPVTLG-----GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELG 117
+ GFP +G G +G P G D + K G PGP G G
Sbjct: 316 NRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSG 375
Query: 118 AKLSLPPGSPHRCPP--------PGL-------------FLLAPGPP----SLDLPPTHS 152
PGSP P PGL + PG P S LP +
Sbjct: 376 P--PGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPG 433
Query: 153 PGPGPRGELLVSSRPQGLSG 172
P PGP G+++ P G G
Sbjct: 434 P-PGPPGDIVFRKGPPGDHG 452
Score = 29.6 bits (65), Expect = 1.4
Identities = 33/92 (35%), Positives = 40/92 (43%), Gaps = 17/92 (18%)
Query: 93 RRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTH- 151
R + G A G PG G + S L PGSP PPG + GPP P +
Sbjct: 406 RGRPGKDAMGTPGSPGCAG-SPGL-------PGSPGPPGPPGDIVFRKGPPGDHGLPGYL 457
Query: 152 -SPG----PGPRGE--LLVSSRPQGLSGPASL 176
SPG GP+GE LL + P + GP L
Sbjct: 458 GSPGIPGVDGPKGEPGLLCTQCPY-IPGPPGL 488
Score = 27.7 bits (60), Expect = 5.4
Identities = 39/146 (26%), Positives = 49/146 (33%), Gaps = 13/146 (8%)
Query: 40 PKSSFPLPRAFIPVG--SNFQPKTSSHGFPVTLGGAQGQAVPGG-----LHSGNHNIDPA 92
P F P A P G + + H + G G P G L ++ D
Sbjct: 199 PPGFFGFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLK 258
Query: 93 RRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHS 152
K A G PGP G S L E PG P PG + PG P + +
Sbjct: 259 GEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGV-PGFPGSEGVKGNR 317
Query: 153 PGPGPRGELLVSSR-----PQGLSGP 173
PG GE + + P G GP
Sbjct: 318 GFPGLMGEDGIKGQKGDIGPPGFRGP 343
Score = 27.7 bits (60), Expect = 5.4
Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 21/122 (17%)
Query: 65 GFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK----- 119
G P T G +PG G A+ + G + G PGP S +S +G K
Sbjct: 907 GNPGTPGQRGSPGIPGV--KGQRGTPGAKGEQGDK--GNPGP---SEISHVIGDKGEPGL 959
Query: 120 --LSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRP--QGLSG-PA 174
+ PG PG+ PG L P + PGPRG+L + P GL G P
Sbjct: 960 KGFAGNPGEKGNRGVPGM----PGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 175 SL 176
S+
Sbjct: 1016 SM 1017
>gi|27502386 nuclear factor of activated T-cells, cytosolic
component 1 isoform C [Homo sapiens]
Length = 930
Score = 39.7 bits (91), Expect = 0.001
Identities = 36/129 (27%), Positives = 52/129 (40%), Gaps = 14/129 (10%)
Query: 45 PLPRAFIPVGSNFQPKTSS---HGFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAA 101
PLPR + P SS GFP + G+ H++ PA G +
Sbjct: 711 PLPRPYYSQQLAMPPDPSSCLVAGFPPCPQRSTLMPAAPGVSPKLHDLSPAAYTKGVASP 770
Query: 102 G-----VPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPG 156
G +P P G++ ++ ++ PGSP + PPP L P + PP+ S PG
Sbjct: 771 GHCHLGLPQPAGEAPAVQDVPRPVATHPGSPGQ-PPPALL-----PQQVSAPPSSSCPPG 824
Query: 157 PRGELLVSS 165
L SS
Sbjct: 825 LEHSLCPSS 833
>gi|189217919 protein associated with topoisomerase II homolog 1
[Homo sapiens]
Length = 770
Score = 39.7 bits (91), Expect = 0.001
Identities = 44/148 (29%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 22 HFRPP-PKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGFPVTLGGAQGQAVPG 80
H RPP P PA SP +P + + +G F P P L Q + G
Sbjct: 215 HVRPPMPPRYPAPYGERMSPNQLCSVPNSSL-LGHPFPPSV-----PPVLSPLQRAQLLG 268
Query: 81 GLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAP 140
G + P+ Q A VPG G + + KL P PG
Sbjct: 269 GAQLQPGRMSPS------QFARVPGFVGSPLAA--MNPKLLQGRVGQMLPPAPGFRAFFS 320
Query: 141 GPPSLDLPPT-HSPGPGPRGELLVSSRP 167
PPS PP H PGPGP + L S P
Sbjct: 321 APPSATPPPQQHPPGPGPHLQNLRSQAP 348
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 39.3 bits (90), Expect = 0.002
Identities = 43/135 (31%), Positives = 52/135 (38%), Gaps = 24/135 (17%)
Query: 45 PLPRAFI-PVGSNFQPKTSSHGFPVTLG-----GAQGQAVPGGLHSGNHNIDPARRKWGG 98
P P F P G++ QP + G P G G G A P G N+ K
Sbjct: 808 PGPAGFAGPPGADGQP--GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 99 QAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPR 158
+AG PG G + +G PPG PPG PGP + G GPR
Sbjct: 866 GSAGPPGATGFPGAAGRVG-----PPGPSGNAGPPG----PPGPAGKE------GGKGPR 910
Query: 159 GELLVSSRPQGLSGP 173
GE + RP G GP
Sbjct: 911 GETGPAGRP-GEVGP 924
Score = 35.0 bits (79), Expect = 0.034
Identities = 40/113 (35%), Positives = 45/113 (39%), Gaps = 17/113 (15%)
Query: 63 SHGFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK-LS 121
S GFP GA G A P G + PA K AG PG G GAK L+
Sbjct: 492 SRGFP----GADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLP------GAKGLT 541
Query: 122 LPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSS--RPQGLSG 172
PGSP G PGP D P PG RG+ V P+G +G
Sbjct: 542 GSPGSPGPDGKTG----PPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAG 590
Score = 34.3 bits (77), Expect = 0.057
Identities = 37/110 (33%), Positives = 42/110 (38%), Gaps = 17/110 (15%)
Query: 54 GSNFQPKTS-SHGFPVTLG--GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDS 110
G+N P + + GFP G G QG PGG P K G PG GD+
Sbjct: 398 GANGAPGIAGAPGFPGARGPSGPQG---PGG---------PPGPKGNSGEPGAPGSKGDT 445
Query: 111 SLSDELG-AKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
E G + PPG G PGP L PP GPG RG
Sbjct: 446 GAKGEPGPVGVQGPPGPAGEEGKRGA-RGEPGPTGLPGPPGERGGPGSRG 494
Score = 33.5 bits (75), Expect = 0.098
Identities = 45/161 (27%), Positives = 59/161 (36%), Gaps = 31/161 (19%)
Query: 13 PEGSARLQGHFRPPPKTIPAKGNVIFSPKSSFPLPRAFIP--VGSNFQP----------K 60
P+GS G RP +P + SP S P + P G + +P +
Sbjct: 519 PKGSPGEAG--RPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQ 576
Query: 61 TSSHGFPVTLG--GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGA 118
GFP G G G+A G+ + PA + A G PGP G + E G
Sbjct: 577 AGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG- 635
Query: 119 KLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
P GSP F PGP PP + PG +G
Sbjct: 636 ----PAGSPG-------FQGLPGPAG---PPGEAGKPGEQG 662
Score = 32.7 bits (73), Expect = 0.17
Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 100 AAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
AAG+PGP GD + GA GSP + GL GP PP + PG +G
Sbjct: 735 AAGLPGPKGDRGDAGPKGA-----DGSPGKDGVRGL----TGPIG---PPGPAGAPGDKG 782
Query: 160 ELLVSSRPQGLSGP 173
E S P G +GP
Sbjct: 783 E----SGPSGPAGP 792
Score = 32.0 bits (71), Expect = 0.28
Identities = 27/89 (30%), Positives = 31/89 (34%), Gaps = 25/89 (28%)
Query: 102 GVPGPGGDSSLSDELGAKLS----------------LPPGSPHRCP-PPGLFLLAPGPPS 144
G PGP G L +LS + P P P PPG APGP
Sbjct: 145 GPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPG----APGPQG 200
Query: 145 LDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
PP PG G + P+G GP
Sbjct: 201 FQGPPGEPGEPGASGPM----GPRGPPGP 225
Score = 29.6 bits (65), Expect = 1.4
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 18/110 (16%)
Query: 72 GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCP 131
GA G P G+ + ++ G+PGP G+ GA S G P
Sbjct: 944 GAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA--SGERGPPGPMG 1001
Query: 132 PPGLFLLAP-------GPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGPA 174
PPG L P G P + P PG +G+ +G +GPA
Sbjct: 1002 PPG--LAGPPGESGREGAPGAEGSPGRDGSPGAKGD-------RGETGPA 1042
Score = 28.9 bits (63), Expect = 2.4
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 99 QAAGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPR 158
+ GV GP GD+ G P G P R G+ PG P L PP PGP
Sbjct: 106 ETTGVEGPKGDTGPRGPRG-----PAGPPGR---DGI----PGQPGLPGPPGPPGPPGPP 153
Query: 159 G 159
G
Sbjct: 154 G 154
Score = 28.5 bits (62), Expect = 3.1
Identities = 29/93 (31%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 72 GAQGQAVPGGL-----HSGNHNIDPARRKWGGQAAGVP----GPGGDSSLSDELGAKLSL 122
GA GQ P GL G AR G A P GP G +GAK
Sbjct: 296 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA 355
Query: 123 PPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGP 155
P P P PGPP P + GP
Sbjct: 356 GPQGPRGSEGPQGVRGEPGPPG----PAGAAGP 384
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/107 (31%), Positives = 38/107 (35%), Gaps = 16/107 (14%)
Query: 67 PVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGS 126
P + G GQ P G P ++ A G+PGP G PPG
Sbjct: 695 PPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIG-----------PPGE 743
Query: 127 PHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
PGL PG P D PP H GP GE P G GP
Sbjct: 744 KGPLGKPGL----PGMPGADGPPGHPGKEGPPGE-KGGQGPPGPQGP 785
Score = 34.3 bits (77), Expect = 0.057
Identities = 31/78 (39%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 102 GVPGPGGDSSLSDELGAK----LSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGP 157
G PGP G E GAK L PPG P G APG P P PGP
Sbjct: 1393 GPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQG----APGKPG---PDGLRGIPGP 1445
Query: 158 RGE--LLVSSRPQGLSGP 173
GE L S P G GP
Sbjct: 1446 VGEQGLPGSPGPDGPPGP 1463
Score = 31.6 bits (70), Expect = 0.37
Identities = 38/116 (32%), Positives = 43/116 (37%), Gaps = 22/116 (18%)
Query: 67 PVTLGGAQGQAVPGGL--HSGNHN-IDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLP 123
P L G +G + P G H G I P + G+PGP G S E G
Sbjct: 1466 PPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSG 1525
Query: 124 PGSPHRCPPPGLFLLAPGPPSLDLPP-----THSPGP-GPRGELLVSSRPQGLSGP 173
P P PGPP L PP S GP GP+GE P G GP
Sbjct: 1526 PIGP------------PGPPGLPGPPGPKGAKGSSGPTGPKGE-AGHPGPPGPPGP 1568
Score = 31.2 bits (69), Expect = 0.49
Identities = 36/124 (29%), Positives = 45/124 (36%), Gaps = 22/124 (17%)
Query: 72 GAQG-QAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK-------LSLP 123
GA G Q PGG+ + + G+ G+PG GG E G K + P
Sbjct: 1264 GADGPQGPPGGIGNPGAVGEKGEPGEAGEP-GLPGEGGPPGPKGERGEKGESGPSGAAGP 1322
Query: 124 PG--------SPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGE-----LLVSSRPQGL 170
PG P P P F PGPP P PG +G+ S P G
Sbjct: 1323 PGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGE 1382
Query: 171 SGPA 174
GP+
Sbjct: 1383 PGPS 1386
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 39.3 bits (90), Expect = 0.002
Identities = 51/172 (29%), Positives = 60/172 (34%), Gaps = 25/172 (14%)
Query: 13 PEGSARLQGHFRPPPKTI---PAKGNVIFSP----KSSFPLPRAFIPVGSNFQPKTSSHG 65
P+G + QG PP K P GN P K P P+ S+ P G
Sbjct: 123 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQG 182
Query: 66 FPVTLGGA-QGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPG---GDSSLSDELGAKLS 121
P G QG P G G + G + G P PG G D
Sbjct: 183 PPPQGGNQPQGPPPPPGKPQG------PPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSAR 236
Query: 122 LPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRPQGLSGP 173
PPG P PP G GPP PP GP P+G ++PQG P
Sbjct: 237 SPPGKPQGPPPQG-GNQPQGPPP---PPGKPQGPPPQG----GNKPQGPPPP 280
Score = 31.6 bits (70), Expect = 0.37
Identities = 33/119 (27%), Positives = 39/119 (32%), Gaps = 14/119 (11%)
Query: 52 PVGSNFQPKTSSHGFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSS 111
P G+ Q G P G QG GG P G+ G P GG+
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPP------GKPQGPPPQGGNKP 89
Query: 112 LSDELGAKLSLPPGSPHRCPPPGLFLLAP-GPPSLDLPPTHSPGPGPRGELLVSSRPQG 169
PPG P PP G +P PP P G P+G +PQG
Sbjct: 90 QGPP-------PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 141
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 39.3 bits (90), Expect = 0.002
Identities = 48/165 (29%), Positives = 57/165 (34%), Gaps = 32/165 (19%)
Query: 13 PEGSARLQGHFRPPPKT------IPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGF 66
P+G + QG PPP+ P GN +S P P P G Q S G
Sbjct: 146 PQGGNQSQG---PPPRPGKPEGPPPQGGN-----QSQGPPPHPGKPEGPPPQGGNQSQGP 197
Query: 67 PVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAG------VPGPGGDSSLSDELGAKL 120
P G +G GG S P + + G P PG + G K
Sbjct: 198 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKP 257
Query: 121 SLPP--GSPHRCPPPGLFLLAPGPPSLDLPP----THSPGPGPRG 159
PP G P PPPG G P LPP P P P+G
Sbjct: 258 QRPPPPGRPQGPPPPG------GNPQQPLPPPAGKPQGPPPPPQG 296
Score = 38.9 bits (89), Expect = 0.002
Identities = 47/150 (31%), Positives = 58/150 (38%), Gaps = 22/150 (14%)
Query: 12 RPEGSARLQGHFRPP--PKTIPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGFPVT 69
RP+G + Q PP P+ P +G +S P PR P G Q S G P
Sbjct: 40 RPQGGNQPQRTPPPPGKPEGRPPQGG----NQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 95
Query: 70 LGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGSPHR 129
G +GQ G GN + P R G+ G P GG+ S PG P
Sbjct: 96 PGKPEGQPPQG----GNQSQGPPPRP--GKPEGPPPQGGNQSQGP------PPRPGKPEG 143
Query: 130 CPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
PP G + GPP P GP P+G
Sbjct: 144 PPPQG-GNQSQGPPP---RPGKPEGPPPQG 169
Score = 37.7 bits (86), Expect = 0.005
Identities = 49/166 (29%), Positives = 59/166 (35%), Gaps = 30/166 (18%)
Query: 13 PEGSARLQGHFRPPPKT------IPAKGNVIFSPKSSFPLPRAFIPVGSNFQPKTSSHGF 66
P+G + QG PPP+ P GN +S P PR P G Q S G
Sbjct: 104 PQGGNQSQG---PPPRPGKPEGPPPQGGN-----QSQGPPPRPGKPEGPPPQGGNQSQGP 155
Query: 67 PVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLPPGS 126
P G +G GG S P G+ G P GG+ S PG
Sbjct: 156 PPRPGKPEGPPPQGGNQSQGPPPHP------GKPEGPPPQGGNQSQGP------PPRPGK 203
Query: 127 PHRCPPPGLFLLAPGPPSLDLPPTHSPGPG---PRGELLVSSRPQG 169
P PP G + GPP P P G P+G +PQG
Sbjct: 204 PEGPPPQG-GNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQG 248
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 38.9 bits (89), Expect = 0.002
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 107 GGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGP 157
G D + DE+ +LP P PPPGL P PP + +PP PGPGP
Sbjct: 299 GNDPLVVDEV----ALPSMIPFPPPPPGL--PPPPPPGMLMPPMPGPGPGP 343
Score = 30.8 bits (68), Expect = 0.63
Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 104 PGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPP--------SLDLPPTHS-PG 154
PGPG G + LP H PPP + L P PP S D P T + P
Sbjct: 345 PGPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQPGTSAVPN 404
Query: 155 PGPRGELLVSSRPQGL 170
G L PQ L
Sbjct: 405 LASVGTRLPPPLPQNL 420
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGL-FLLAPGPPSLDLPPTHSPGPGPRGE 160
G PGP G + G + PG P PPG+ + GPP PP PGP +
Sbjct: 1357 GPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQ 1416
Query: 161 LLVSSRPQGLSGP 173
+ P G GP
Sbjct: 1417 TISVPGPPGPPGP 1429
Score = 33.5 bits (75), Expect = 0.098
Identities = 35/115 (30%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 65 GFPVTLG--GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSL 122
GFP G G G+ P G ++ A + G PGP G S GA
Sbjct: 947 GFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGA---- 1002
Query: 123 PPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSR-PQGLSGPASL 176
PG PPG PGPP LP G G ++R G GP L
Sbjct: 1003 -PGPAGPPGPPG----PPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGL 1052
Score = 30.8 bits (68), Expect = 0.63
Identities = 38/134 (28%), Positives = 43/134 (32%), Gaps = 41/134 (30%)
Query: 69 TLGGAQGQAVPGG----LHSGNHNIDPARRKWGGQAA-----GVPGPGGDSSLSDELGAK 119
T+ Q +PG G+ R K GG GVPGP G +
Sbjct: 719 TVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAG-------- 770
Query: 120 LSLPPGSPHRCPPPGLFLLA-------------------PGPPSLDLPPTHSPGPGPRGE 160
PPGSP PPGL PGPP D P PG GE
Sbjct: 771 ---PPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGE 827
Query: 161 --LLVSSRPQGLSG 172
+ PQG G
Sbjct: 828 DGKPGDTGPQGFPG 841
Score = 30.4 bits (67), Expect = 0.83
Identities = 42/137 (30%), Positives = 44/137 (32%), Gaps = 36/137 (26%)
Query: 52 PVGSNFQPKTSSHGFPVTLGGAQGQAVPGG---LHSGNHNIDPARRKWGGQAA------- 101
P G P G P G QG P G H ID +GG
Sbjct: 848 PKGDKGDPGVGERGPP----GPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRG 903
Query: 102 --GVPGPGGDSSLSDE---LGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPG 156
G PGP G L E G S PG P GL PG P + PP PG
Sbjct: 904 FPGPPGPPGVPGLPGEPGRFGVNSSDVPG------PAGL----PGVPGREGPPGFPGLPG 953
Query: 157 PRGELLVSSRPQGLSGP 173
P G P G GP
Sbjct: 954 PPG-------PPGREGP 963
Score = 28.5 bits (62), Expect = 3.1
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 101 AGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
AG G G+ G+ L PPG P PG+ PGP + P PGP+G
Sbjct: 1333 AGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGI----PGPKGESIRGQPGP-PGPQG 1386
Score = 27.7 bits (60), Expect = 5.4
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLF---LLAPGPPSLDLPPTHSPGPGPR 158
G PGP G + E PPG P PG + PGPP PP PGP
Sbjct: 1380 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPG---PP---GPPGPP 1433
Query: 159 GELLVSS 165
G + SS
Sbjct: 1434 GTMGASS 1440
Score = 26.9 bits (58), Expect = 9.2
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 101 AGVPGPGGDSSLSDELGAKLSLPP----GSPHRCPPPGLFLLAP------GPPSLDLPPT 150
AG PGP G G + S P G P P L P G P PP
Sbjct: 1150 AGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPG 1209
Query: 151 HSPGPGPRGELLVSSRP--QGLSG 172
PG +GE+ RP G++G
Sbjct: 1210 PYGRPGYKGEIGFPGRPGRPGMNG 1233
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGL-FLLAPGPPSLDLPPTHSPGPGPRGE 160
G PGP G + G + PG P PPG+ + GPP PP PGP +
Sbjct: 942 GPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQ 1001
Query: 161 LLVSSRPQGLSGP 173
+ P G GP
Sbjct: 1002 TISVPGPPGPPGP 1014
Score = 33.5 bits (75), Expect = 0.098
Identities = 35/115 (30%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 65 GFPVTLG--GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSL 122
GFP G G G+ P G ++ A + G PGP G S GA
Sbjct: 532 GFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGA---- 587
Query: 123 PPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSR-PQGLSGPASL 176
PG PPG PGPP LP G G ++R G GP L
Sbjct: 588 -PGPAGPPGPPG----PPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGL 637
Score = 30.8 bits (68), Expect = 0.63
Identities = 38/134 (28%), Positives = 43/134 (32%), Gaps = 41/134 (30%)
Query: 69 TLGGAQGQAVPGG----LHSGNHNIDPARRKWGGQAA-----GVPGPGGDSSLSDELGAK 119
T+ Q +PG G+ R K GG GVPGP G +
Sbjct: 304 TVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAG-------- 355
Query: 120 LSLPPGSPHRCPPPGLFLLA-------------------PGPPSLDLPPTHSPGPGPRGE 160
PPGSP PPGL PGPP D P PG GE
Sbjct: 356 ---PPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGE 412
Query: 161 --LLVSSRPQGLSG 172
+ PQG G
Sbjct: 413 DGKPGDTGPQGFPG 426
Score = 30.4 bits (67), Expect = 0.83
Identities = 42/137 (30%), Positives = 44/137 (32%), Gaps = 36/137 (26%)
Query: 52 PVGSNFQPKTSSHGFPVTLGGAQGQAVPGG---LHSGNHNIDPARRKWGGQAA------- 101
P G P G P G QG P G H ID +GG
Sbjct: 433 PKGDKGDPGVGERGPP----GPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRG 488
Query: 102 --GVPGPGGDSSLSDE---LGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPG 156
G PGP G L E G S PG P GL PG P + PP PG
Sbjct: 489 FPGPPGPPGVPGLPGEPGRFGVNSSDVPG------PAGL----PGVPGREGPPGFPGLPG 538
Query: 157 PRGELLVSSRPQGLSGP 173
P G P G GP
Sbjct: 539 PPG-------PPGREGP 548
Score = 28.5 bits (62), Expect = 3.1
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 101 AGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
AG G G+ G+ L PPG P PG+ PGP + P PGP+G
Sbjct: 918 AGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGI----PGPKGESIRGQPGP-PGPQG 971
Score = 27.7 bits (60), Expect = 5.4
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLF---LLAPGPPSLDLPPTHSPGPGPR 158
G PGP G + E PPG P PG + PGPP PP PGP
Sbjct: 965 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPG---PP---GPPGPP 1018
Query: 159 GELLVSS 165
G + SS
Sbjct: 1019 GTMGASS 1025
Score = 26.9 bits (58), Expect = 9.2
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 101 AGVPGPGGDSSLSDELGAKLSLPP----GSPHRCPPPGLFLLAP------GPPSLDLPPT 150
AG PGP G G + S P G P P L P G P PP
Sbjct: 735 AGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPG 794
Query: 151 HSPGPGPRGELLVSSRP--QGLSG 172
PG +GE+ RP G++G
Sbjct: 795 PYGRPGYKGEIGFPGRPGRPGMNG 818
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGL-FLLAPGPPSLDLPPTHSPGPGPRGE 160
G PGP G + G + PG P PPG+ + GPP PP PGP +
Sbjct: 1122 GPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQ 1181
Query: 161 LLVSSRPQGLSGP 173
+ P G GP
Sbjct: 1182 TISVPGPPGPPGP 1194
Score = 33.5 bits (75), Expect = 0.098
Identities = 35/115 (30%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 65 GFPVTLG--GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSL 122
GFP G G G+ P G ++ A + G PGP G S GA
Sbjct: 712 GFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHKGSKGAPGPAGARGESGLAGA---- 767
Query: 123 PPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSR-PQGLSGPASL 176
PG PPG PGPP LP G G ++R G GP L
Sbjct: 768 -PGPAGPPGPPG----PPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGL 817
Score = 30.8 bits (68), Expect = 0.63
Identities = 38/134 (28%), Positives = 43/134 (32%), Gaps = 41/134 (30%)
Query: 69 TLGGAQGQAVPGG----LHSGNHNIDPARRKWGGQAA-----GVPGPGGDSSLSDELGAK 119
T+ Q +PG G+ R K GG GVPGP G +
Sbjct: 484 TVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAG-------- 535
Query: 120 LSLPPGSPHRCPPPGLFLLA-------------------PGPPSLDLPPTHSPGPGPRGE 160
PPGSP PPGL PGPP D P PG GE
Sbjct: 536 ---PPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPGPPGRDGTPGRDGEPGDPGE 592
Query: 161 --LLVSSRPQGLSG 172
+ PQG G
Sbjct: 593 DGKPGDTGPQGFPG 606
Score = 30.4 bits (67), Expect = 0.83
Identities = 42/137 (30%), Positives = 44/137 (32%), Gaps = 36/137 (26%)
Query: 52 PVGSNFQPKTSSHGFPVTLGGAQGQAVPGG---LHSGNHNIDPARRKWGGQAA------- 101
P G P G P G QG P G H ID +GG
Sbjct: 613 PKGDKGDPGVGERGPP----GPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRG 668
Query: 102 --GVPGPGGDSSLSDE---LGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPG 156
G PGP G L E G S PG P GL PG P + PP PG
Sbjct: 669 FPGPPGPPGVPGLPGEPGRFGVNSSDVPG------PAGL----PGVPGREGPPGFPGLPG 718
Query: 157 PRGELLVSSRPQGLSGP 173
P G P G GP
Sbjct: 719 PPG-------PPGREGP 728
Score = 28.5 bits (62), Expect = 3.1
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 101 AGVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
AG G G+ G+ L PPG P PG+ PGP + P PGP+G
Sbjct: 1098 AGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGI----PGPKGESIRGQPGP-PGPQG 1151
Score = 27.7 bits (60), Expect = 5.4
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 102 GVPGPGGDSSLSDELGAKLSLPPGSPHRCPPPGLF---LLAPGPPSLDLPPTHSPGPGPR 158
G PGP G + E PPG P PG + PGPP PP PGP
Sbjct: 1145 GPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPG---PP---GPPGPP 1198
Query: 159 GELLVSS 165
G + SS
Sbjct: 1199 GTMGASS 1205
Score = 26.9 bits (58), Expect = 9.2
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 12/84 (14%)
Query: 101 AGVPGPGGDSSLSDELGAKLSLPP----GSPHRCPPPGLFLLAP------GPPSLDLPPT 150
AG PGP G G + S P G P P L P G P PP
Sbjct: 915 AGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPG 974
Query: 151 HSPGPGPRGELLVSSRP--QGLSG 172
PG +GE+ RP G++G
Sbjct: 975 PYGRPGYKGEIGFPGRPGRPGMNG 998
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 38.5 bits (88), Expect = 0.003
Identities = 39/115 (33%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 72 GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDEL------GAK----LS 121
G G P GL K G GVPG G E+ G K
Sbjct: 381 GESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFV 440
Query: 122 LPPGSPHRCPPPGLFLLAPGPPSLDLPPT-HSPG--PGPRGELLVSSRPQGLSGP 173
P G PPGL PGPP + LP T PG PGP+G+ S P G GP
Sbjct: 441 GPEGLAGEPGPPGL----PGPPGIGLPGTPGDPGGPPGPKGDKGSSGIP-GKEGP 490
Score = 33.5 bits (75), Expect = 0.098
Identities = 35/116 (30%), Positives = 43/116 (37%), Gaps = 14/116 (12%)
Query: 62 SSHGFPVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLS 121
S G + G GQ P G G + + GV GP G + E G
Sbjct: 729 SLQGTVTDMAGRPGQPGPKG-EQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPG---- 783
Query: 122 LPPGSPHRCPP--PGLFLLAPGPPSLDLPPTHSPGPGPRGELLVSSRP--QGLSGP 173
PPG + P PG APG P + P PGP GE P +G +GP
Sbjct: 784 -PPGRGVQGPQGEPG----APGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGP 834
Score = 33.1 bits (74), Expect = 0.13
Identities = 50/175 (28%), Positives = 61/175 (34%), Gaps = 30/175 (17%)
Query: 13 PEGSARLQGHFRPPPKTIPAKGNVIFSPKSSFPLP--------RAFIPVGSNFQPKTSSH 64
P G A +G R P KG+ F + FP P + P Q + S
Sbjct: 1130 PPGPAGPRGE-RGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSE 1188
Query: 65 GF--PVTLGGAQGQAVPGGLH--SGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAK- 119
G P L G+ G P G+ +G +D K G G PGP G L G K
Sbjct: 1189 GIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPG--LRGDPGPAGPPGLMGPPGFKG 1246
Query: 120 ------LSLPPGSPHRCPPPGLFLL--------APGPPSLDLPPTHSPGPGPRGE 160
L P G + PPG A GP PP H PGP G+
Sbjct: 1247 KTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQ 1301
Score = 32.3 bits (72), Expect = 0.22
Identities = 42/128 (32%), Positives = 49/128 (38%), Gaps = 27/128 (21%)
Query: 67 PVTLGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPG-PG--GDSSLSDELGAKLSL- 122
P L G +G+ P G+ P A G PG PG G+ L+ G K
Sbjct: 1025 PPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPG 1084
Query: 123 ---PPGSPHRCPPPGLFLLA--------------PGPPSLDLPPTHSPGP-GPRGELLVS 164
PG P PPGL + PGPP + P PGP GPRGE
Sbjct: 1085 PPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLP-GPPGPAGPRGE---- 1139
Query: 165 SRPQGLSG 172
PQG SG
Sbjct: 1140 RGPQGNSG 1147
Score = 32.0 bits (71), Expect = 0.28
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 14/109 (12%)
Query: 72 GAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPG-PGGDSSLSDELGAKLSLP--PGSPH 128
G QG A P G P+ + AG PG PG E + P PG P
Sbjct: 709 GVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPG 768
Query: 129 RCPPPGLFLL--APGPPSLDLPPTHSPGPGPRGELLVSSRP--QGLSGP 173
PPGL + PGPP + GP+GE P QGL GP
Sbjct: 769 VQGPPGLKGVQGEPGPPGRGV-------QGPQGEPGAPGLPGIQGLPGP 810
Score = 30.4 bits (67), Expect = 0.83
Identities = 31/92 (33%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 70 LGGAQGQAVPGGLHSGNHNIDPARRKWGGQAAGVPGPGGDSSLSDELGAKLSLP--PGSP 127
L G G A P GL + P K G+PGP GD G+ P G P
Sbjct: 1226 LRGDPGPAGPPGL------MGPPGFKGKTGHPGLPGPKGDCGKPGPPGST-GRPGAEGEP 1278
Query: 128 HRCPPPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
P G PGPP PP PGP G
Sbjct: 1279 GAMGPQG----RPGPPGHVGPPGPPGQPGPAG 1306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.140 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,810,629
Number of Sequences: 37866
Number of extensions: 913374
Number of successful extensions: 5441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 644
Number of HSP's that attempted gapping in prelim test: 3658
Number of HSP's gapped (non-prelim): 2035
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.