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Search of human proteins with 239747227
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747227 PREDICTED: similar to hCG2041787 [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752693 PREDICTED: similar to hCG2041787 [Homo sapiens] 378 e-105
gi|239747227 PREDICTED: similar to hCG2041787 [Homo sapiens] 378 e-105
gi|239741035 PREDICTED: similar to hCG2041787 [Homo sapiens] 378 e-105
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 42 2e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.009
gi|48762934 alpha 2 type I collagen [Homo sapiens] 36 0.016
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens] 36 0.016
gi|113426339 PREDICTED: hypothetical protein [Homo sapiens] 36 0.016
gi|113426005 PREDICTED: hypothetical protein [Homo sapiens] 36 0.016
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 36 0.016
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 36 0.021
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 36 0.021
gi|18641360 collectin sub-family member 12 [Homo sapiens] 36 0.021
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 35 0.047
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 34 0.061
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 34 0.061
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 34 0.061
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 34 0.061
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 34 0.061
gi|226371735 iroquois homeobox 3 [Homo sapiens] 33 0.10
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 33 0.14
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 33 0.14
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 33 0.14
gi|27262645 ataxin 2 related protein isoform B [Homo sapiens] 33 0.14
gi|27262653 ataxin 2 related protein isoform E [Homo sapiens] 33 0.14
gi|163965366 nascent polypeptide-associated complex alpha subuni... 33 0.14
gi|27262649 ataxin 2 related protein isoform C [Homo sapiens] 33 0.14
gi|27262647 ataxin 2 related protein isoform A [Homo sapiens] 33 0.14
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 33 0.14
gi|27262651 ataxin 2 related protein isoform D [Homo sapiens] 33 0.14
>gi|239752693 PREDICTED: similar to hCG2041787 [Homo sapiens]
Length = 269
Score = 378 bits (970), Expect = e-105
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR 60
MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR
Sbjct: 87 MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR 146
Query: 61 ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES 120
ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES
Sbjct: 147 ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES 206
Query: 121 LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS 180
LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS
Sbjct: 207 LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS 266
Query: 181 THL 183
THL
Sbjct: 267 THL 269
>gi|239747227 PREDICTED: similar to hCG2041787 [Homo sapiens]
Length = 183
Score = 378 bits (970), Expect = e-105
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR 60
MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR
Sbjct: 1 MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR 60
Query: 61 ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES 120
ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES
Sbjct: 61 ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES 120
Query: 121 LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS 180
LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS
Sbjct: 121 LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS 180
Query: 181 THL 183
THL
Sbjct: 181 THL 183
>gi|239741035 PREDICTED: similar to hCG2041787 [Homo sapiens]
Length = 269
Score = 378 bits (970), Expect = e-105
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR 60
MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR
Sbjct: 87 MDLGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPR 146
Query: 61 ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES 120
ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES
Sbjct: 147 ATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRES 206
Query: 121 LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS 180
LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS
Sbjct: 207 LSAEETGRVRTTHAPGKLLKKASSSNCASSLQYPLNSSKQTLFPADIAGTILVNTEWELS 266
Query: 181 THL 183
THL
Sbjct: 267 THL 269
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 42.4 bits (98), Expect = 2e-04
Identities = 32/87 (36%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 19 SPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRT-HLHKAV 77
+P G G++ +RGP LA AP R G G P GP G + PG P A T L
Sbjct: 670 APGGKGDAGAPGERGPPGLAGAPGLRGGAG-PPGPEGGKGAAGPPGPPGAAGTPGLQGMP 728
Query: 78 GVREAWQHHLSVGFGCAGRRQDPGLPG 104
G R G G G + D G PG
Sbjct: 729 GERG--------GLGSPGPKGDKGEPG 747
Score = 29.3 bits (64), Expect = 2.0
Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 15/67 (22%)
Query: 18 PSPEG-AGESAPSADRGPATLARAPLRRAGIGCP--------------EGPVGFRRPRAT 62
P P G AG+S + GPA A AP G P G G + R
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGF 1111
Query: 63 PGTPEAP 69
PG P AP
Sbjct: 1112 PGNPGAP 1118
Score = 27.3 bits (59), Expect = 7.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 20 PEGAGESAPSADRG---PATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEA 68
P G GE ++G P +A P +G P GP G + R +PG P A
Sbjct: 821 PGGKGERGAPGEKGEGGPPGVAGPP-GGSGPAGPPGPQGVKGERGSPGGPGA 871
Score = 27.3 bits (59), Expect = 7.5
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 8 GRPSVSVSEAPS-PEGA-GESAPSADRGPATLARAPLRRAGIGCP-----EGPVGFRRPR 60
G P S P+ +GA G P+ RGP + P + G P GP G R R
Sbjct: 1113 GNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGER 1172
Query: 61 ATPGTPEAP 69
+ G+P P
Sbjct: 1173 GSEGSPGHP 1181
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.0 bits (84), Expect = 0.009
Identities = 24/55 (43%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 18 PSPEGA----GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEA 68
P P GA GES PS GP AP R G P GP GF P G P A
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPG-PPGPAGFAGPPGADGQPGA 825
Score = 31.6 bits (70), Expect = 0.40
Identities = 37/122 (30%), Positives = 46/122 (37%), Gaps = 23/122 (18%)
Query: 17 APSPEG-AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHK 75
AP P G AG+S + GPA G P GPVG R P P+ PR +
Sbjct: 1053 APGPVGPAGKSGDRGETGPA----------GPAGPVGPVGARGPAG----PQGPRGDKGE 1098
Query: 76 AVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRESLSAEETGRVRTTHAP 135
E + G +G + PG PG+ G S S A G + AP
Sbjct: 1099 ---TGEQGDRGIKGHRGFSGLQGPPGPPGSPGE-----QGPSGASGPAGPRGPPGSAGAP 1150
Query: 136 GK 137
GK
Sbjct: 1151 GK 1152
Score = 29.6 bits (65), Expect = 1.5
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 14/76 (18%)
Query: 3 LGSQAGRPSVSVSEAPSPEGA-------GESAPSADRGPATLARAP--LRRAGIGCPEGP 53
L + GRP AP P GA G + P GPA P + G P+GP
Sbjct: 306 LPGERGRPG-----APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGP 360
Query: 54 VGFRRPRATPGTPEAP 69
G P+ G P P
Sbjct: 361 RGSEGPQGVRGEPGPP 376
Score = 29.6 bits (65), Expect = 1.5
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 21/89 (23%)
Query: 2 DLGSQAGRPSVSVSEAPSPEGA-------GESAPSADRGPATLARAPLRRAGIGCP---- 50
D G + R + P P G+ G S P+ RGP A AP + G P
Sbjct: 1104 DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIG 1163
Query: 51 ----------EGPVGFRRPRATPGTPEAP 69
GPVG P PG P P
Sbjct: 1164 PPGPRGRTGDAGPVGPPGPPGPPGPPGPP 1192
Score = 26.9 bits (58), Expect = 9.8
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 10 PSVSVSEAPSPEGAGESAPSADRGPATLARAP--LRRAGIGCPEGPVGFRRPRATPGTPE 67
P+ + A +P G+ G +A AP G P+GP G P+ G P
Sbjct: 378 PAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPG 437
Query: 68 AP 69
AP
Sbjct: 438 AP 439
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 36.2 bits (82), Expect = 0.016
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 4 GSQAGRPSVSVSEAPSPEGA----GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRP 59
G R + AP P GA GE+ + GPA +P R +G P GP GF P
Sbjct: 670 GRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVG-PAGPNGFAGP 728
Query: 60 RATPGTPEA 68
G P A
Sbjct: 729 AGAAGQPGA 737
Score = 31.2 bits (69), Expect = 0.52
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 12 VSVSEAPSPEG----AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPE 67
V + AP P G AG+ + GP+ P G P GP G R + PG +
Sbjct: 957 VGAAGAPGPHGPVGPAGKHGNRGETGPSGPV-GPAGAVGPRGPSGPQGIRGDKGEPG-EK 1014
Query: 68 APRTHLHKAVGVREAWQHHLSVGF-GCAGRRQDPGLPGT 105
PR G+ H+ G G AG D G PG+
Sbjct: 1015 GPR-------GLPGLKGHNGLQGLPGIAGHHGDQGAPGS 1046
Score = 30.0 bits (66), Expect = 1.2
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 18 PSPEGA-GESAPSADRGPATLARAP---------LRRAGIGCPEGPVGFRRPRATPGTPE 67
P P G GE P+ GP P G+G GP+G PR PG
Sbjct: 47 PGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAG 106
Query: 68 AP 69
AP
Sbjct: 107 AP 108
Score = 29.6 bits (65), Expect = 1.5
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 10 PSVSVSEAPSPEGAGESAPSADRGPATLA--RAPLRRAGIGCPEGPVGFRRPRATPGTPE 67
P+ S E+ + G + P GP+ R P AG P GP G R + G P
Sbjct: 350 PAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPG 409
Query: 68 AP-RTHLHKAVGVREA-WQHHLSVGFGCAGRRQDPGLPG 104
A R + G R A + G AGR +PGL G
Sbjct: 410 ADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMG 448
Score = 29.3 bits (64), Expect = 2.0
Identities = 38/136 (27%), Positives = 46/136 (33%), Gaps = 20/136 (14%)
Query: 23 AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREA 82
AG+ +RG A+ P G+ P GPVG P A P P P G R
Sbjct: 732 AGQPGAKGERG----AKGPKGENGVVGPTGPVGAAGP-AGPNGPPGP-------AGSRGD 779
Query: 83 WQHHLSVGF-GCAGRRQDPGLPG-------TGWRHFFSLHGSSRESLSAEETGRVRTTHA 134
GF G AGR PG G G L G + TG V
Sbjct: 780 GGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGP 839
Query: 135 PGKLLKKASSSNCASS 150
PG +K S ++
Sbjct: 840 PGFAGEKGPSGEAGTA 855
Score = 28.9 bits (63), Expect = 2.6
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 24 GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAW 83
G + P +RGP +G P GP+G R P PG P+ + V A
Sbjct: 583 GPAGPRGERGPPG-------ESGAAGPTGPIGSRGPSGPPG-PDGNKGEPGVVGAVGTAG 634
Query: 84 QHHLSVGFGCAGRRQDPGLPG 104
S G G R G+PG
Sbjct: 635 PSGPS---GLPGERGAAGIPG 652
Score = 27.3 bits (59), Expect = 7.5
Identities = 34/113 (30%), Positives = 38/113 (33%), Gaps = 22/113 (19%)
Query: 3 LGSQAGRPSVSVSE-APSPEGA----------GESAPSADRGPATLARAPLRRAGIGCPE 51
L Q G P V AP G GE GPA AR G P
Sbjct: 188 LKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAG-ARGSDGSVGPVGPA 246
Query: 52 GPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
GP+G P PG P P+ + A G AG R + GLPG
Sbjct: 247 GPIGSAGPPGFPGAP-GPKGEIGAVGNAGPA---------GPAGPRGEVGLPG 289
>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 36.2 bits (82), Expect = 0.016
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 7 AGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTP 66
A P + A P G+ A + R + R R G+G GPVG PR
Sbjct: 89 AAAPHAHTATASPPPGSARRAAAVARHAGSEGRG-WRPPGLGREAGPVGGAEPREAGSIA 147
Query: 67 EAPRTHLHKAVGVREAW 83
P H+ + +G E W
Sbjct: 148 GRPAPHVPRPLGGEEVW 164
>gi|113426339 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 36.2 bits (82), Expect = 0.016
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 7 AGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTP 66
A P + A P G+ A + R + R R G+G GPVG PR
Sbjct: 89 AAAPHAHTATASPPPGSARRAAAVARHAGSEGRG-WRPPGLGREAGPVGGAEPREAGSIA 147
Query: 67 EAPRTHLHKAVGVREAW 83
P H+ + +G E W
Sbjct: 148 GRPAPHVPRPLGGEEVW 164
>gi|113426005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 36.2 bits (82), Expect = 0.016
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 7 AGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTP 66
A P + A P G+ A + R + R R G+G GPVG PR
Sbjct: 89 AAAPHAHTATASPPPGSARRAAAVARHAGSEGRG-WRPPGLGREAGPVGGAEPREAGSIA 147
Query: 67 EAPRTHLHKAVGVREAW 83
P H+ + +G E W
Sbjct: 148 GRPAPHVPRPLGGEEVW 164
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 36.2 bits (82), Expect = 0.016
Identities = 36/113 (31%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 5 SQAGRPSVSVSEAPSPEGAGESAPSADRGPATLA--RAPLRRAGIGCP-----------E 51
S G+P V P G P D GPA L R P GI P +
Sbjct: 103 SAVGKPGVPGLPG-KPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPGKPGQQ 161
Query: 52 GPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
GP G PR PG AP GV +G+G GR + GLPG
Sbjct: 162 GPTGAPGPRGFPGEKGAP--------GVPGMNGQKGEMGYGAPGRPGERGLPG 206
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 35.8 bits (81), Expect = 0.021
Identities = 32/105 (30%), Positives = 34/105 (32%), Gaps = 24/105 (22%)
Query: 4 GSQAGRPSVSVSEAPSPEGA----GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRP 59
G GR P P GA GE P G A AP R G P GP GF P
Sbjct: 780 GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG-PPGPAGFAGP 838
Query: 60 RATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
G P A G AG++ D G PG
Sbjct: 839 PGADGQPGAKGEQ-------------------GEAGQKGDAGAPG 864
Score = 31.2 bits (69), Expect = 0.52
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 18 PSPEG-AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAP 69
P P+G AGE P DRG AP R G P G G P PG P P
Sbjct: 122 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEP-GTPGNPGPPGPPGPPGPP 173
Score = 29.3 bits (64), Expect = 2.0
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 20 PEGAGESAPSADRGPATLARAPLRR--AGIGCPEGPVGFRRPRATPGTPEAP 69
P AG P G AP + AG GP G + PR PGTP +P
Sbjct: 350 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 401
Score = 28.9 bits (63), Expect = 2.6
Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 3 LGSQAGRPSVSVSEAPSPEG----------AGESAPSADRGPATLARAPLRRAGIGCP-- 50
+G R + AP P+G G S P RGP P G P
Sbjct: 203 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 262
Query: 51 ---EGPVGFRRPRATPGTPEAPRTHLHK 75
GP G + R PGTP P H+
Sbjct: 263 AGERGPPGPQGARGFPGTPGLPGVKGHR 290
Score = 26.9 bits (58), Expect = 9.8
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 16 EAPSPEGAGESAPSADRGP--------ATLARAPLRRAG---IGCPEGPVGFRRPRATPG 64
E +P G P GP A +A +AG +G +GP+G PR PG
Sbjct: 154 EPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPG 213
Query: 65 TPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
AP + E + +S G G PG PG
Sbjct: 214 PAGAPGPQGFQG-NPGEPGEPGVSGPMGPRGPPGPPGKPG 252
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 35.8 bits (81), Expect = 0.021
Identities = 32/105 (30%), Positives = 34/105 (32%), Gaps = 24/105 (22%)
Query: 4 GSQAGRPSVSVSEAPSPEGA----GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRP 59
G GR P P GA GE P G A AP R G P GP GF P
Sbjct: 711 GKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETG-PPGPAGFAGP 769
Query: 60 RATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
G P A G AG++ D G PG
Sbjct: 770 PGADGQPGAKGEQ-------------------GEAGQKGDAGAPG 795
Score = 31.2 bits (69), Expect = 0.52
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 18 PSPEG-AGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAP 69
P P+G AGE P DRG AP R G P G G P PG P P
Sbjct: 53 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEP-GTPGNPGPPGPPGPPGPP 104
Score = 29.3 bits (64), Expect = 2.0
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 20 PEGAGESAPSADRGPATLARAPLRR--AGIGCPEGPVGFRRPRATPGTPEAP 69
P AG P G AP + AG GP G + PR PGTP +P
Sbjct: 281 PGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSP 332
Score = 28.9 bits (63), Expect = 2.6
Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 3 LGSQAGRPSVSVSEAPSPEG----------AGESAPSADRGPATLARAPLRRAGIGCP-- 50
+G R + AP P+G G S P RGP P G P
Sbjct: 134 MGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK 193
Query: 51 ---EGPVGFRRPRATPGTPEAPRTHLHK 75
GP G + R PGTP P H+
Sbjct: 194 AGERGPPGPQGARGFPGTPGLPGVKGHR 221
Score = 26.9 bits (58), Expect = 9.8
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 16 EAPSPEGAGESAPSADRGP--------ATLARAPLRRAG---IGCPEGPVGFRRPRATPG 64
E +P G P GP A +A +AG +G +GP+G PR PG
Sbjct: 85 EPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPG 144
Query: 65 TPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
AP + E + +S G G PG PG
Sbjct: 145 PAGAPGPQGFQG-NPGEPGEPGVSGPMGPRGPPGPPGKPG 183
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 35.8 bits (81), Expect = 0.021
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 4 GSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATP 63
GSQ + S P P+G PS D GP P + G+ P+GP GF+ + T
Sbjct: 503 GSQGPKGSRGSPGKPGPQG-----PSGDPGPP----GPPGKEGLPGPQGPPGFQGLQGTV 553
Query: 64 GTPEAP 69
G P P
Sbjct: 554 GEPGVP 559
Score = 29.6 bits (65), Expect = 1.5
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 2 DLGSQAGRPSVSVSEAPSPEGA--GESAPSADRGPATLARAPLRRAGIGC--PEGPVGFR 57
D GSQ G P + ++ E G P+ +RGP A P R G G +GP G R
Sbjct: 453 DRGSQ-GPPGPTGNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKGSKGSQGPKGSR 511
Query: 58 RPRATPGTPEAP 69
PG P+ P
Sbjct: 512 GSPGKPG-PQGP 522
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 34.7 bits (78), Expect = 0.047
Identities = 38/151 (25%), Positives = 57/151 (37%), Gaps = 17/151 (11%)
Query: 15 SEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATP------GTPEA 68
S+A S GAG + P P + +P+R +G G PEG +G R P G P
Sbjct: 848 SQAASAFGAGPTQP-----PHPVVPSPVRPSG-GRPEGFLGQRGRAVRPTRLSLEGLPSL 901
Query: 69 PRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRHFFSLHGSSRESLSAEETGR 128
P H + ++ ++++ FG G R P P + SS LSA
Sbjct: 902 PSMHEYPLPPEPKSPGEYINIDFGEPGARLSPPAP-----PLLASAASSSSLLSASSPAS 956
Query: 129 VRTTHAPGKLLKKASSSNCASSLQYPLNSSK 159
+ PG S + + +S K
Sbjct: 957 SLGSGTPGTSSDSRQRSPLSDYMNLDFSSPK 987
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 34.3 bits (77), Expect = 0.061
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 22/110 (20%)
Query: 17 APSPEGAGESAPSADRGPA-TLARAPLRRAGIGCPEGPVGF----------------RRP 59
APSP A P+ R P RA RA G P+ P G RRP
Sbjct: 58 APSPAPA---LPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP 114
Query: 60 RATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRH 109
R P P PR + + EA G +GRR D G G+GW H
Sbjct: 115 RRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG--GSGWSH 162
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 3 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 62
LG Q G P + P+ AG S P P+ + RA R + GP A
Sbjct: 11 LGGQWGTPLYPRARGPAIASAGYSRP-----PSPVGRARRRGTWLRVLRGPRAPSPAPAL 65
Query: 63 PGTPEAPRTHLHKAVGVREA 82
P PR + +AV R A
Sbjct: 66 PARARPPRENRKRAVPARAA 85
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 34.3 bits (77), Expect = 0.061
Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 22/110 (20%)
Query: 17 APSPEGAGESAPSADRGPA-TLARAPLRRAGIGCPEGPVGF----------------RRP 59
APSP A P+ R P RA RA G P+ P G RRP
Sbjct: 58 APSPAPA---LPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP 114
Query: 60 RATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPGTGWRH 109
R P P PR + + EA G +GRR D G G+GW H
Sbjct: 115 RRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRG--GSGWSH 162
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 3 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 62
LG Q G P + P+ AG S P P+ + RA R + GP A
Sbjct: 11 LGGQWGTPLYPRARGPAIASAGYSRP-----PSPVGRARRRGTWLRVLRGPRAPSPAPAL 65
Query: 63 PGTPEAPRTHLHKAVGVREA 82
P PR + +AV R A
Sbjct: 66 PARARPPRENRKRAVPARAA 85
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 34.3 bits (77), Expect = 0.061
Identities = 33/113 (29%), Positives = 43/113 (38%), Gaps = 30/113 (26%)
Query: 6 QAGRPSVSVSEAP----SPEGAGESAPSADRGPATLARAP--LRRAGIGCP-----EGPV 54
+AG P S+ P +P G P +RG + +P + GIG P +GP
Sbjct: 578 EAGPPGKSLPGEPGLDGNPGAPGPRGPKGERGLPGVHGSPGDIGPQGIGIPGRTGAQGPA 637
Query: 55 G---FRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
G + PR PG P P T + G GR PGLPG
Sbjct: 638 GEPGIQGPRGLPGLPGTPGTPGND----------------GVPGRDGKPGLPG 674
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 34.3 bits (77), Expect = 0.061
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 18 PSPEGA-GESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKA 76
P P G G+ P RGP + AP +AG GP GFR P+ G P T
Sbjct: 237 PGPLGPPGDRGPIGFRGPPGIPGAP-GKAGDRGERGPEGFRGPKGDLGRPGPKGTP---- 291
Query: 77 VGVREAWQHHLSVGFGCAGRRQDPGLPG 104
G AG +PG+PG
Sbjct: 292 ---------------GVAGPSGEPGMPG 304
Score = 30.4 bits (67), Expect = 0.89
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 18 PSPEGA-GESAPSADRGPATLAR----APLRRAGIGCPEGPVGFRRPRATPGTPEAP 69
P P+GA GE GP L P AG+ P G +G R P G P P
Sbjct: 94 PGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGPSGLPGLP 150
Score = 28.5 bits (62), Expect = 3.4
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 18 PSPEG-AGESAPSADRGPATLARAPLRRAGIGCP--EGPVGFRRPRATPGTP 66
P P G AG +GP L P +G P GP+GFR P PG P
Sbjct: 213 PGPPGPAGLPGSVGLQGPRGLRGLP---GPLGPPGDRGPIGFRGPPGIPGAP 261
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 34.3 bits (77), Expect = 0.061
Identities = 22/68 (32%), Positives = 27/68 (39%)
Query: 4 GSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATP 63
G A P + PSP+G +P +G + AP RAG P G RR A
Sbjct: 504 GPGAWAPPLDSPGTPSPDGPWCFSPEGAQGAGGVLFAPFGRAGAPGPGGGSDLRRREAAR 563
Query: 64 GTPEAPRT 71
P RT
Sbjct: 564 AEPRDART 571
>gi|226371735 iroquois homeobox 3 [Homo sapiens]
Length = 501
Score = 33.5 bits (75), Expect = 0.10
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 19 SPEGAGESAPSADRGPATLARAPLRRAG-----IGCPEGPVGFRRPRATPGTPEAPRTH 72
SP GAG S P A P+ L +P A + P G R PG P PR H
Sbjct: 365 SPPGAGGSPPGAAVAPSALQLSPAAAAAAAHRLVSAPLGKFPAWTNRPFPGPPPGPRLH 423
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 33.1 bits (74), Expect = 0.14
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 22/92 (23%)
Query: 18 PSPEGA-GESAPS----ADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTH 72
P P G G S S D GP + P + G+ P+GP G P PG P
Sbjct: 1362 PGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLK-GLPGPQGPQGLPGPTGPPGDPG----- 1415
Query: 73 LHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
++ L G GR+ DPGLPG
Sbjct: 1416 -----------RNGLPGFDGAGGRKGDPGLPG 1436
Score = 30.0 bits (66), Expect = 1.2
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 26/119 (21%)
Query: 8 GRPSVSVSEAPSPEG-AGESAPSADRGPATLA-----------RAPLRRAGIGCPEGPVG 55
G P +V P P G GE D GP ++ AP G+ P GP G
Sbjct: 386 GPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAP----GLPGPPGPAG 441
Query: 56 FRRPRAT----PGTPEAPRTHLHKAVGVREAWQHHLS------VGFGCAGRRQDPGLPG 104
P + PG P P + K + + + +G G +G PGLPG
Sbjct: 442 PHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPG 500
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 6 QAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPG 64
+ G P + + P P+G P P T R G+ P GP GF P+ PG
Sbjct: 700 EPGIPGIGLPGPPGPKGF-PGIPGPPGAPGTPGRI-----GLEGPPGPPGFPGPKGEPG 752
Score = 28.5 bits (62), Expect = 3.4
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 46 GIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVG----FGCAGRRQDPG 101
GI P GP G R P PG P P G+ H + G GC G + + G
Sbjct: 81 GIPGPPGPKGIRGPPGLPGFPGTP--------GLPGMPGHDGAPGPQGIPGCNGTKGERG 132
Query: 102 LPGT 105
PG+
Sbjct: 133 FPGS 136
Score = 26.9 bits (58), Expect = 9.8
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 46 GIGCPEGPVGFRRPRATPGTPEAP-RTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
G+ P GP GF PG P P R L G GF G PGLPG
Sbjct: 707 GLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPG 766
Score = 26.9 bits (58), Expect = 9.8
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 20 PEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGV 79
P G+ P+ GP + L G+ P GP G P PG LH G
Sbjct: 795 PGPKGDVGPNGQPGP--MGPPGLPGIGVQGPPGPPGIPGPIGQPG--------LHGIPGE 844
Query: 80 R-EAWQHHLSVGFGCAGRRQDPGLPG 104
+ + L V G G R PG+PG
Sbjct: 845 KGDPGPPGLDVP-GPPGERGSPGIPG 869
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 33.1 bits (74), Expect = 0.14
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 22/92 (23%)
Query: 18 PSPEGA-GESAPS----ADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTH 72
P P G G S S D GP + P + G+ P+GP G P PG P
Sbjct: 1356 PGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLK-GLPGPQGPQGLPGPTGPPGDPG----- 1409
Query: 73 LHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
++ L G GR+ DPGLPG
Sbjct: 1410 -----------RNGLPGFDGAGGRKGDPGLPG 1430
Score = 30.0 bits (66), Expect = 1.2
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 26/119 (21%)
Query: 8 GRPSVSVSEAPSPEG-AGESAPSADRGPATLA-----------RAPLRRAGIGCPEGPVG 55
G P +V P P G GE D GP ++ AP G+ P GP G
Sbjct: 386 GPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAP----GLPGPPGPAG 441
Query: 56 FRRPRAT----PGTPEAPRTHLHKAVGVREAWQHHLS------VGFGCAGRRQDPGLPG 104
P + PG P P + K + + + +G G +G PGLPG
Sbjct: 442 PHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPG 500
Score = 30.0 bits (66), Expect = 1.2
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 8 GRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGF------RRPRA 61
G P S P+ EG P + GP + P R G+ PEGP G + +
Sbjct: 1235 GPPGPPGSPGPALEG-----PKGNPGP----QGPPGRPGLPGPEGPPGLPGNGGIKGEKG 1285
Query: 62 TPGTPEAPRTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
PG P P K Q + G G + DPGLPG
Sbjct: 1286 NPGQPGLPGLPGLKGDQGPPGLQGNPGRP-GLNGMKGDPGLPG 1327
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 6 QAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPG 64
+ G P + + P P+G P P T R G+ P GP GF P+ PG
Sbjct: 700 EPGIPGIGLPGPPGPKGF-PGIPGPPGAPGTPGRI-----GLEGPPGPPGFPGPKGEPG 752
Score = 28.5 bits (62), Expect = 3.4
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 46 GIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVG----FGCAGRRQDPG 101
GI P GP G R P PG P P G+ H + G GC G + + G
Sbjct: 81 GIPGPPGPKGIRGPPGLPGFPGTP--------GLPGMPGHDGAPGPQGIPGCNGTKGERG 132
Query: 102 LPGT 105
PG+
Sbjct: 133 FPGS 136
Score = 26.9 bits (58), Expect = 9.8
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 46 GIGCPEGPVGFRRPRATPGTPEAP-RTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
G+ P GP GF PG P P R L G GF G PGLPG
Sbjct: 707 GLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPG 766
Score = 26.9 bits (58), Expect = 9.8
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 20 PEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGV 79
P G+ P+ GP + L G+ P GP G P PG LH G
Sbjct: 795 PGPKGDVGPNGQPGP--MGPPGLPGIGVQGPPGPPGIPGPIGQPG--------LHGIPGE 844
Query: 80 R-EAWQHHLSVGFGCAGRRQDPGLPG 104
+ + L V G G R PG+PG
Sbjct: 845 KGDPGPPGLDVP-GPPGERGSPGIPG 869
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 33.1 bits (74), Expect = 0.14
Identities = 29/92 (31%), Positives = 36/92 (39%), Gaps = 22/92 (23%)
Query: 18 PSPEGA-GESAPS----ADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTH 72
P P G G S S D GP + P + G+ P+GP G P PG P
Sbjct: 1359 PGPPGLPGPSGQSIIIKGDAGPPGIPGQPGLK-GLPGPQGPQGLPGPTGPPGDPG----- 1412
Query: 73 LHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
++ L G GR+ DPGLPG
Sbjct: 1413 -----------RNGLPGFDGAGGRKGDPGLPG 1433
Score = 30.0 bits (66), Expect = 1.2
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 26/119 (21%)
Query: 8 GRPSVSVSEAPSPEG-AGESAPSADRGPATLA-----------RAPLRRAGIGCPEGPVG 55
G P +V P P G GE D GP ++ AP G+ P GP G
Sbjct: 386 GPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAP----GLPGPPGPAG 441
Query: 56 FRRPRAT----PGTPEAPRTHLHKAVGVREAWQHHLS------VGFGCAGRRQDPGLPG 104
P + PG P P + K + + + +G G +G PGLPG
Sbjct: 442 PHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPG 500
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 6 QAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPG 64
+ G P + + P P+G P P T R G+ P GP GF P+ PG
Sbjct: 700 EPGIPGIGLPGPPGPKGF-PGIPGPPGAPGTPGRI-----GLEGPPGPPGFPGPKGEPG 752
Score = 28.5 bits (62), Expect = 3.4
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 46 GIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGVREAWQHHLSVG----FGCAGRRQDPG 101
GI P GP G R P PG P P G+ H + G GC G + + G
Sbjct: 81 GIPGPPGPKGIRGPPGLPGFPGTP--------GLPGMPGHDGAPGPQGIPGCNGTKGERG 132
Query: 102 LPGT 105
PG+
Sbjct: 133 FPGS 136
Score = 26.9 bits (58), Expect = 9.8
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 46 GIGCPEGPVGFRRPRATPGTPEAP-RTHLHKAVGVREAWQHHLSVGFGCAGRRQDPGLPG 104
G+ P GP GF PG P P R L G GF G PGLPG
Sbjct: 707 GLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPG 766
Score = 26.9 bits (58), Expect = 9.8
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 20 PEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPEAPRTHLHKAVGV 79
P G+ P+ GP + L G+ P GP G P PG LH G
Sbjct: 795 PGPKGDVGPNGQPGP--MGPPGLPGIGVQGPPGPPGIPGPIGQPG--------LHGIPGE 844
Query: 80 R-EAWQHHLSVGFGCAGRRQDPGLPG 104
+ + L V G G R PG+PG
Sbjct: 845 KGDPGPPGLDVP-GPPGERGSPGIPG 869
>gi|27262645 ataxin 2 related protein isoform B [Homo sapiens]
Length = 1062
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 3 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 62
L S + RPS S P P G P R P + A AP+ + CPE P+G P ++
Sbjct: 422 LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPISAS---CPEPPIGSAVPTSS 475
Query: 63 PGTP 66
P
Sbjct: 476 ASIP 479
>gi|27262653 ataxin 2 related protein isoform E [Homo sapiens]
Length = 1044
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 3 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 62
L S + RPS S P P G P R P + A AP+ + CPE P+G P ++
Sbjct: 422 LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPISAS---CPEPPIGSAVPTSS 475
Query: 63 PGTP 66
P
Sbjct: 476 ASIP 479
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 33.1 bits (74), Expect = 0.14
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 5 SQAGRPSVSVSEAPSPEGAGESAPSADRGPAT-LARAPLRRAGIGCPEGPVGFRRPRATP 63
S G P+ + PSP+G G + PS P T A P + G+ P P ATP
Sbjct: 1190 SPKGAPTTPAATPPSPKG-GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1248
Query: 64 GTPE 67
+P+
Sbjct: 1249 PSPK 1252
Score = 32.3 bits (72), Expect = 0.23
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 8 GRPSVSVSEAPSPEGAGESAPSADRGPAT-LARAPLRRAGIGCPEGPVGFRRPRATPGTP 66
G P+ + PSP+G G + PS P T A P + G+ P P ATP +P
Sbjct: 1170 GAPTTPAATPPSPKG-GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP 1228
Query: 67 E 67
+
Sbjct: 1229 K 1229
Score = 31.2 bits (69), Expect = 0.52
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 5 SQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEG--------PVGF 56
S+ G + S E P+P A PS GPA +P R I P+G P+
Sbjct: 1356 SKGGPTTPSSKEGPTPPAA---TPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSP 1412
Query: 57 RRPRATPGTPEAPRT 71
++ ATP T E T
Sbjct: 1413 KKAPATPVTREGAAT 1427
Score = 30.4 bits (67), Expect = 0.89
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 8 GRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPE 67
G P+ + PSP+G + P A P + G+ P P ATP +P+
Sbjct: 1147 GAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPK 1206
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 8 GRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPGTPE 67
G P+ + PSP+G + P A P + G+ P P ATP +P+
Sbjct: 1124 GAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPK 1183
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 5 SQAGRPSVSVSEAPSPEGAGESAPSADRGPAT-LARAPLRRAGIGCPEGPVGFRRPRATP 63
S G P+ + PSP+G G + PS P A P + G+ P P ATP
Sbjct: 1075 SLKGAPTPPAATPPSPKG-GPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATP 1133
Query: 64 GTPE 67
+P+
Sbjct: 1134 PSPK 1137
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 8 GRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATP---- 63
G P+ +V PSP+G ++P A P + G P P TP
Sbjct: 1285 GAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPK 1344
Query: 64 GTPEAPRT 71
GTP P T
Sbjct: 1345 GTPTLPAT 1352
Score = 29.3 bits (64), Expect = 2.0
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 8 GRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRP-RATPGTP 66
G P+ + PSP+G G + PS P A P G P G P ATP +P
Sbjct: 1055 GAPTTPAATLPSPKG-GPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSP 1113
Query: 67 E 67
+
Sbjct: 1114 K 1114
Score = 29.3 bits (64), Expect = 2.0
Identities = 17/63 (26%), Positives = 24/63 (38%)
Query: 5 SQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPG 64
S G P + PSP+G + P A P + G+ P P ATP
Sbjct: 1098 SPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPP 1157
Query: 65 TPE 67
+P+
Sbjct: 1158 SPK 1160
Score = 28.9 bits (63), Expect = 2.6
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 5 SQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRATPG 64
S G P+ + PSP+G G + PS P T A P P+G P+ P
Sbjct: 1213 SPKGAPTTPAATPPSPKG-GLATPSPKGAPTTPAATP------PSPKGGPATPPPKGAPT 1265
Query: 65 TPEA 68
P A
Sbjct: 1266 PPAA 1269
>gi|27262649 ataxin 2 related protein isoform C [Homo sapiens]
Length = 1097
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 3 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 62
L S + RPS S P P G P R P + A AP+ + CPE P+G P ++
Sbjct: 422 LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPISAS---CPEPPIGSAVPTSS 475
Query: 63 PGTP 66
P
Sbjct: 476 ASIP 479
>gi|27262647 ataxin 2 related protein isoform A [Homo sapiens]
Length = 1075
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 3 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 62
L S + RPS S P P G P R P + A AP+ + CPE P+G P ++
Sbjct: 422 LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPISAS---CPEPPIGSAVPTSS 475
Query: 63 PGTP 66
P
Sbjct: 476 ASIP 479
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 33.1 bits (74), Expect = 0.14
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 2 DLGSQAGRP---SVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRR 58
D G+QAG SV+VS +GAG SA S P + R AG+ G R
Sbjct: 811 DAGTQAGAQACVSVAVSPMSPQDGAGGSAFSFQAAPRAPSPPSRRDAGLQVSLGAAETRS 870
Query: 59 PRATPGTPEAPRTHLHKAVGVR 80
P TP+A V VR
Sbjct: 871 VATGPMTPQAAAPPAFPEVRVR 892
>gi|27262651 ataxin 2 related protein isoform D [Homo sapiens]
Length = 1044
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 3 LGSQAGRPSVSVSEAPSPEGAGESAPSADRGPATLARAPLRRAGIGCPEGPVGFRRPRAT 62
L S + RPS S P P G P R P + A AP+ + CPE P+G P ++
Sbjct: 422 LSSPSNRPSGETS-VPPPPAVGRMYPP--RSPKSAAPAPISAS---CPEPPIGSAVPTSS 475
Query: 63 PGTP 66
P
Sbjct: 476 ASIP 479
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,781,927
Number of Sequences: 37866
Number of extensions: 494559
Number of successful extensions: 2610
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 2071
Number of HSP's gapped (non-prelim): 720
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.