Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 117414143
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117414143 hypothetical protein LOC55603 [Homo sapiens]
(442 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117414143 hypothetical protein LOC55603 [Homo sapiens] 912 0.0
gi|38570095 hypothetical protein LOC54855 [Homo sapiens] 556 e-158
gi|209862821 hypothetical protein LOC115572 [Homo sapiens] 491 e-139
gi|22749287 hypothetical protein LOC169966 [Homo sapiens] 464 e-131
gi|195972866 keratin 10 [Homo sapiens] 51 2e-06
gi|119395750 keratin 1 [Homo sapiens] 49 1e-05
gi|47132620 keratin 2 [Homo sapiens] 42 0.001
gi|23510368 homeobox D11 [Homo sapiens] 40 0.004
gi|109148552 keratin 3 [Homo sapiens] 40 0.004
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 38 0.016
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 38 0.016
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 38 0.016
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 38 0.016
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 38 0.021
gi|153791670 keratin 76 [Homo sapiens] 37 0.027
gi|194018511 keratin 77 [Homo sapiens] 37 0.027
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 37 0.036
gi|109452587 family with sequence similarity 98, member B isofor... 37 0.036
gi|24497620 signal recognition particle 68kDa [Homo sapiens] 37 0.036
gi|192807292 keratin 24 [Homo sapiens] 37 0.047
gi|55956899 keratin 9 [Homo sapiens] 37 0.047
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 37 0.047
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 37 0.047
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 37 0.047
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 36 0.061
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor... 36 0.080
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform... 36 0.080
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 35 0.10
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 35 0.10
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 35 0.10
>gi|117414143 hypothetical protein LOC55603 [Homo sapiens]
Length = 442
Score = 912 bits (2357), Expect = 0.0
Identities = 442/442 (100%), Positives = 442/442 (100%)
Query: 1 MAEGEGYFAMSEDELACSPYIPLGGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCESPT 60
MAEGEGYFAMSEDELACSPYIPLGGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCESPT
Sbjct: 1 MAEGEGYFAMSEDELACSPYIPLGGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCESPT 60
Query: 61 AHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGVRDVRL 120
AHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGVRDVRL
Sbjct: 61 AHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGVRDVRL 120
Query: 121 NGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQTVKDVVLDCLLDFLPEGVNKEKITP 180
NGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQTVKDVVLDCLLDFLPEGVNKEKITP
Sbjct: 121 NGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQTVKDVVLDCLLDFLPEGVNKEKITP 180
Query: 181 LTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIKLDSL 240
LTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIKLDSL
Sbjct: 181 LTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIKLDSL 240
Query: 241 LLFYECSENPMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGGGLLKYCNLL 300
LLFYECSENPMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGGGLLKYCNLL
Sbjct: 241 LLFYECSENPMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGGGLLKYCNLL 300
Query: 301 VRGFRPASDEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLEDRKYEYLMTLHG 360
VRGFRPASDEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLEDRKYEYLMTLHG
Sbjct: 301 VRGFRPASDEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLEDRKYEYLMTLHG 360
Query: 361 VVNESTVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPYVADANFSNYY 420
VVNESTVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPYVADANFSNYY
Sbjct: 361 VVNESTVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPYVADANFSNYY 420
Query: 421 IAQVQPVFTCQQQTYSTWLPCN 442
IAQVQPVFTCQQQTYSTWLPCN
Sbjct: 421 IAQVQPVFTCQQQTYSTWLPCN 442
>gi|38570095 hypothetical protein LOC54855 [Homo sapiens]
Length = 391
Score = 556 bits (1432), Expect = e-158
Identities = 278/388 (71%), Positives = 318/388 (81%), Gaps = 4/388 (1%)
Query: 56 CESPTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGV 115
C +VLNW+QV RL +L+E +PIHGRGNFPTLE+ IV+ VR RL E I V
Sbjct: 7 CTRDCMSFSVLNWDQVSRLHEVLTEVVPIHGRGNFPTLEITLKDIVQTVRSRLEEAGIKV 66
Query: 116 RDVRLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQTVKDVVLDCLLDFLPEGVNK 175
DVRLNGSAA HVL +D+GLG KDLDLIF L E EFQ V+DVVL LL+FLPEGVNK
Sbjct: 67 HDVRLNGSAAGHVLVKDNGLGCKDLDLIFHVALPTEAEFQLVRDVVLCSLLNFLPEGVNK 126
Query: 176 EKITPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQI 235
KI+P+TLKEAYVQK+VKVC D+DRWSLISLSN +GKNVELKFVDS+RRQFEFSVDSFQI
Sbjct: 127 LKISPVTLKEAYVQKLVKVCTDTDRWSLISLSNKNGKNVELKFVDSIRRQFEFSVDSFQI 186
Query: 236 KLDSLLLFYECSENPMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGGGLLK 295
LDSLL FY+CS NP++E FHPT+IGES+YGDF+EAFDHL N++IAT+NPEEIRGGGLLK
Sbjct: 187 ILDSLLFFYDCSNNPISEHFHPTVIGESMYGDFEEAFDHLQNRLIATKNPEEIRGGGLLK 246
Query: 296 YCNLLVRGFRPA-SDEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLEDRKYEY 354
Y NLLVR FRP +EIKTL+RYMCSRFFIDF DI EQQRKLE+YLQNHF E KY+Y
Sbjct: 247 YSNLLVRDFRPTDQEEIKTLERYMCSRFFIDFPDILEQQRKLETYLQNHFAEEERSKYDY 306
Query: 355 LMTLHGVVNESTVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPYVADA 414
LM L VVNESTVCLMGHERRQTLNLI++LA+RVLA+QN+IP+ NVTCYYQPAPYV+D
Sbjct: 307 LMILRRVVNESTVCLMGHERRQTLNLISLLALRVLAEQNIIPSATNVTCYYQPAPYVSDG 366
Query: 415 NFSNYYIAQVQPVFTCQQQTYSTWLPCN 442
NFSNYY+A ++ Q Y TWLPCN
Sbjct: 367 NFSNYYVAHPPVTYS---QPYPTWLPCN 391
>gi|209862821 hypothetical protein LOC115572 [Homo sapiens]
Length = 425
Score = 491 bits (1265), Expect = e-139
Identities = 252/386 (65%), Positives = 294/386 (76%), Gaps = 7/386 (1%)
Query: 59 PTAHCNVLNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGVRDV 118
P H + L+W QV+RLD +LSE IPIHGRGNFPTL +QP IV+VVR L E+ + V V
Sbjct: 45 PGRHLSGLSWPQVKRLDALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSV 104
Query: 119 RLNGSAASHVLHQDSGLGYKDLDLIFCADLRGEGEFQTVKDVVLDCLLDFLPEGVNKEKI 178
RL+GSAASHVLH +SGLGYKDLDL+F DLR E FQ K VVL CLLDFLP GV++ KI
Sbjct: 105 RLHGSAASHVLHPESGLGYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKI 164
Query: 179 TPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIKLD 238
TPLTLKEAYVQK+VKVC DSDRWSLISLSN SGKNVELKFVDS+RRQFEFS+DSFQI LD
Sbjct: 165 TPLTLKEAYVQKLVKVCTDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILD 224
Query: 239 SLLLFYECSENPMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGGGLLKYCN 298
SLLLF +CS PM+E FHPT+ GES+YGDF EA +HL +++IATR+PEEIRGGGLLKYC+
Sbjct: 225 SLLLFGQCSSTPMSEAFHPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCH 284
Query: 299 LLVRGFRP-ASDEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLE-DRKYEYLM 356
LLVRGFRP S +++ LQRYMCSRFFIDF D+ EQ+R LE YL+ HF G + R+Y L+
Sbjct: 285 LLVRGFRPRPSTDVRALQRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLV 344
Query: 357 TLHGVVNESTVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPYVADANF 416
TLH VVNESTVCLM HERRQTL+LI LA++ LA+Q P + P
Sbjct: 345 TLHRVVNESTVCLMNHERRQTLDLIAALALQALAEQG--PAATAALAWRPPGTDGVVPAT 402
Query: 417 SNYYIAQVQPVFTCQQQTYSTWLPCN 442
NYY+ VQP+ Y TWLPCN
Sbjct: 403 VNYYVTPVQPLLA---HAYPTWLPCN 425
>gi|22749287 hypothetical protein LOC169966 [Homo sapiens]
Length = 389
Score = 464 bits (1193), Expect = e-131
Identities = 229/364 (62%), Positives = 282/364 (77%), Gaps = 2/364 (0%)
Query: 66 LNWEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGVRDVRLNGSAA 125
L W+QV LD +L E IPIHG+GNFPT+E++P I+ VV+ +L + I V+D RLNGS A
Sbjct: 9 LTWDQVITLDQVLDEVIPIHGKGNFPTMEVKPKDIIHVVKDQLIGQGIIVKDARLNGSVA 68
Query: 126 SHVLHQDSGLGYKDLDLIFCADLRGEGEFQTVKDVVLDCLLDFLPEGVNKEKITPLTLKE 185
S++L +G+ YKDLD+IF +L G EFQ VKD VLDCLLDFLP+ V KEK++P +K+
Sbjct: 69 SYILASHNGISYKDLDVIFGVELPGNEEFQVVKDAVLDCLLDFLPKDVKKEKLSPDIMKD 128
Query: 186 AYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIKLDSLLLFYE 245
AYVQK+VKVCN D WSLISLSNN+GKN+ELKFV SLRRQFEFSVDSFQI LD +L FY
Sbjct: 129 AYVQKLVKVCNGHDCWSLISLSNNTGKNLELKFVSSLRRQFEFSVDSFQIVLDPMLDFYS 188
Query: 246 CSENPMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGGGLLKYCNLLVRGFR 305
+T+ +P ++ ES+YGDFQEA HL +K+I TR PEEIRGGGLLKYC+LLV GF+
Sbjct: 189 DKNAKLTKESYPVVVAESMYGDFQEAMTHLQHKLICTRKPEEIRGGGLLKYCSLLVHGFK 248
Query: 306 PA-SDEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLEDRKYEYLMTLHGVVNE 364
PA EIK L+RYMCSRFFIDF I EQQ+K+ESYL NHF+G KY+YLMTLHGVVNE
Sbjct: 249 PACMSEIKNLERYMCSRFFIDFPHIEEQQKKIESYLHNHFIGEGMTKYDYLMTLHGVVNE 308
Query: 365 STVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPY-VADANFSNYYIAQ 423
STVCLM +ERRQ L+LITM+A++VL + N++PN VTC+YQPAPY A+A + Y I +
Sbjct: 309 STVCLMSYERRQILHLITMMALKVLGELNILPNTQKVTCFYQPAPYFAAEARYPIYVIPE 368
Query: 424 VQPV 427
PV
Sbjct: 369 PPPV 372
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 51.2 bits (121), Expect = 2e-06
Identities = 21/27 (77%), Positives = 21/27 (77%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG FGGG FGGG FGGG FGGGG GG
Sbjct: 99 GGSFGGGSFGGGSFGGGSFGGGGFGGG 125
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/27 (77%), Positives = 21/27 (77%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG FGGG FGGG FGGG FGGGG GG
Sbjct: 104 GGSFGGGSFGGGSFGGGGFGGGGFGGG 130
Score = 43.1 bits (100), Expect = 5e-04
Identities = 19/27 (70%), Positives = 19/27 (70%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG FGGG FGGG FGGG GG G GG
Sbjct: 114 GGSFGGGGFGGGGFGGGFGGGFGGDGG 140
Score = 43.1 bits (100), Expect = 5e-04
Identities = 17/28 (60%), Positives = 19/28 (67%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGGH 51
GG +GGG GGG GG +GGG S GGH
Sbjct: 539 GGGYGGGSSGGGSSSGGGYGGGSSSGGH 566
Score = 41.6 bits (96), Expect = 0.001
Identities = 21/31 (67%), Positives = 21/31 (67%), Gaps = 6/31 (19%)
Query: 24 GGDFGGGDFGGGDFGG----GDFGGGGSFGG 50
GG FGGG FGGG FGG G FGGG FGG
Sbjct: 109 GGSFGGGSFGGGGFGGGGFGGGFGGG--FGG 137
Score = 41.6 bits (96), Expect = 0.001
Identities = 19/28 (67%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGGH 51
GG GGG FGGG +GGG GGG S GGH
Sbjct: 461 GGGRGGGSFGGG-YGGGSSGGGSSGGGH 487
Score = 41.2 bits (95), Expect = 0.002
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGGH 51
GG +GGG GGG GGG +GGG S GGH
Sbjct: 496 GGGYGGGSSGGGSSGGG-YGGGSSSGGH 522
Score = 37.7 bits (86), Expect = 0.021
Identities = 19/33 (57%), Positives = 20/33 (60%), Gaps = 7/33 (21%)
Query: 25 GDFGGGDFGG---GDFGGGDFG----GGGSFGG 50
G +G FGG G FGGG FG GGGSFGG
Sbjct: 87 GSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGG 119
Score = 37.7 bits (86), Expect = 0.021
Identities = 18/28 (64%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 24 GGDFGGGDFGGGDFGGGDFGG-GGSFGG 50
GG +GGG GGG GGG GG GGS GG
Sbjct: 470 GGGYGGGSSGGGSSGGGHGGGHGGSSGG 497
Score = 36.6 bits (83), Expect = 0.047
Identities = 18/28 (64%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGGH 51
GG FGGG +GGG GGG GGG GGH
Sbjct: 466 GGSFGGG-YGGGSSGGGS-SGGGHGGGH 491
Score = 36.2 bits (82), Expect = 0.061
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFGG 50
G GGG GGG FGGG +GGG S GG
Sbjct: 457 GSSGGGGRGGGSFGGG-YGGGSSGGG 481
Score = 35.4 bits (80), Expect = 0.10
Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 24 GGDFGGGDFGGGDFGG--GDFGGGGSFGG 50
GG F G GGG FGG G +GG G FGG
Sbjct: 54 GGSFSRGSSGGGCFGGSSGGYGGLGGFGG 82
Score = 35.4 bits (80), Expect = 0.10
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 24 GGDFGGGDFG--GGDFGGGDFGGGGSFGGH 51
GG GGG G GG +GGG GGG S GG+
Sbjct: 484 GGGHGGGHGGSSGGGYGGGSSGGGSSGGGY 513
Score = 35.0 bits (79), Expect = 0.14
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 25 GDFGGGDFGGGD--FGGGDFGGGGSFGG 50
G +GGG GGG +GGG GGG S GG
Sbjct: 528 GGYGGGSSGGGGGGYGGGSSGGGSSSGG 555
Score = 34.7 bits (78), Expect = 0.18
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 23 LGGDFGGGDFGGGDFGGGDFGG---GGSFGGH 51
LGG F G F GG F G GG GGS GG+
Sbjct: 43 LGGGFSSGGFSGGSFSRGSSGGGCFGGSSGGY 74
Score = 33.1 bits (74), Expect = 0.52
Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 10/37 (27%)
Query: 24 GGDFGG--GDFGG-GDFGGGDFGG-------GGSFGG 50
GG FGG G +GG G FGGG F G GGS+GG
Sbjct: 64 GGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGG 100
Score = 33.1 bits (74), Expect = 0.52
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 24 GGDFGGGDFGGGDFG------GGDFGGGGSFGG 50
GG GGG GGG G GG +GGG S GG
Sbjct: 475 GGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGG 507
Score = 31.6 bits (70), Expect = 1.5
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 28 GGGDFGGGDFGGGDFG---GGGSFGG 50
G G GGG GGG FG GGGS GG
Sbjct: 455 GEGSSGGGGRGGGSFGGGYGGGSSGG 480
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 24 GGDFGGGDFGGGDFG--GGDFGGGGSFGG 50
GG +GGG GG G G +GGG S GG
Sbjct: 510 GGGYGGGSSSGGHGGSSSGGYGGGSSGGG 538
Score = 31.2 bits (69), Expect = 2.0
Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 24 GGDFGGGDFGGGDFGGGDFG-GGGSFGG 50
GG GG +GGG GGG G GGGS GG
Sbjct: 523 GGSSSGG-YGGGSSGGGGGGYGGGSSGG 549
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 24 GGDFGGGDFGGGDFGGGDFG------GGGSFGG 50
GG GG +GGG GG G GGGS GG
Sbjct: 505 GGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGG 537
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 24 GGDFGGGDFG---GGDFGGGDFGGGGSFGG 50
GG GG G GG GG GGGG +GG
Sbjct: 515 GGSSSGGHGGSSSGGYGGGSSGGGGGGYGG 544
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 48.5 bits (114), Expect = 1e-05
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG +GGG FGGG FGGG FGGGG GG
Sbjct: 91 GGGYGGGGFGGGGFGGGGFGGGGIGGG 117
Score = 47.0 bits (110), Expect = 3e-05
Identities = 21/27 (77%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG FGGG FGGG FGGG GGGG FGG
Sbjct: 96 GGGFGGGGFGGGGFGGGGIGGGG-FGG 121
Score = 46.2 bits (108), Expect = 6e-05
Identities = 20/27 (74%), Positives = 20/27 (74%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG FGGG FGGG GGG FGG GS GG
Sbjct: 101 GGGFGGGGFGGGGIGGGGFGGFGSGGG 127
Score = 43.9 bits (102), Expect = 3e-04
Identities = 19/28 (67%), Positives = 20/28 (71%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGGH 51
GG FGG GGG FGGG FGGGG GG+
Sbjct: 116 GGGFGGFGSGGGGFGGGGFGGGGYGGGY 143
Score = 42.0 bits (97), Expect = 0.001
Identities = 19/27 (70%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
G FGGG +GGG FGGG FGGGG GG
Sbjct: 87 GSGFGGG-YGGGGFGGGGFGGGGFGGG 112
Score = 41.2 bits (95), Expect = 0.002
Identities = 20/32 (62%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Query: 24 GGDFGGGDFGGGDF-----GGGDFGGGGSFGG 50
GG FGGG GGG F GGG FGGGG GG
Sbjct: 106 GGGFGGGGIGGGGFGGFGSGGGGFGGGGFGGG 137
Score = 35.0 bits (79), Expect = 0.14
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 4 GEGYFAMSEDELACSPYIPLGGDFGGG---DFGGGDFGGGDFGGGGSFGG 50
G G+ + S L S I + GGG FGGG +GGG FGGGG GG
Sbjct: 59 GGGFGSRSLVNLGGSKSISISVARGGGRGSGFGGG-YGGGGFGGGGFGGG 107
Score = 32.3 bits (72), Expect = 0.88
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 28 GGGDFGGGDFGGGDFGGGGSFGGHCL 53
GGG F GGG FG GG FG L
Sbjct: 42 GGGRFSSCGGGGGSFGAGGGFGSRSL 67
Score = 32.3 bits (72), Expect = 0.88
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
Query: 18 SPYIPLGGDFGGGDFGGG------------DFGGGDFGGGGSFGGH 51
S Y GG +G G GGG GGG +G GG GGH
Sbjct: 530 SSYGSGGGSYGSGGGGGGGRGSYGSGGSSYGSGGGSYGSGGGGGGH 575
Score = 32.0 bits (71), Expect = 1.2
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFGG 50
G +G G GG GG GGGGS GG
Sbjct: 576 GSYGSGSSSGGYRGGSGGGGGGSSGG 601
Score = 30.8 bits (68), Expect = 2.6
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GG GGG GG GGGS GG
Sbjct: 585 GGYRGGSGGGGGGSSGGRGSGGGSSGG 611
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 28 GGGDFGGGDFGGG--DFGGGGSFGGH 51
GGG +G G GGG +G G S GG+
Sbjct: 562 GGGSYGSGGGGGGHGSYGSGSSSGGY 587
Score = 29.3 bits (64), Expect = 7.5
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 24 GGDFGGGDFGGGDF--GGGDFGGGGSFGG 50
GG GG GG + GGG +G GG GG
Sbjct: 519 GGGGGGYGSGGSSYGSGGGSYGSGGGGGG 547
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG G G +G G GG GG G GG
Sbjct: 570 GGGGGHGSYGSGSSSGGYRGGSGGGGG 596
Score = 28.9 bits (63), Expect = 9.8
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GG GGG GG G G S GG
Sbjct: 596 GGSSGGRGSGGGSSGGSIGGRGSSSGG 622
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 41.6 bits (96), Expect = 0.001
Identities = 18/27 (66%), Positives = 18/27 (66%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
G F GG FGGG FGGG FGG G GG
Sbjct: 105 GSGFSGGGFGGGGFGGGRFGGFGGPGG 131
Score = 40.4 bits (93), Expect = 0.003
Identities = 20/30 (66%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 24 GGDFGGGD-FGGGDFGGGDFGGG--GSFGG 50
G FGGG F GG FGGG FGGG G FGG
Sbjct: 99 GSSFGGGSGFSGGGFGGGGFGGGRFGGFGG 128
Score = 37.0 bits (84), Expect = 0.036
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 24 GGDFGGGDFGGGD-FGGGDFGGGGSFGG 50
GG GG FGGG F GG FGGGG GG
Sbjct: 94 GGFGGGSSFGGGSGFSGGGFGGGGFGGG 121
Score = 36.6 bits (83), Expect = 0.047
Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 13/40 (32%)
Query: 24 GGDFGGGDFGGGDFGG-------------GDFGGGGSFGG 50
GG FGGG FGGG FGG G FG GG GG
Sbjct: 110 GGGFGGGGFGGGRFGGFGGPGGVGGLGGPGGFGPGGYPGG 149
Score = 35.4 bits (80), Expect = 0.10
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 4 GEGYFAMSEDELACSPYIPLGGDFGGGDFGG-GDFGG--GDFGGGGSFGG 50
G G+ + S L + I + GGG FG G FGG G FGGG SFGG
Sbjct: 55 GGGFGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGGRGGGFGGGSSFGG 104
Score = 33.1 bits (74), Expect = 0.52
Identities = 19/31 (61%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 24 GGDFGG-GDFGG--GDFGGGD-FGGGGSFGG 50
GG FG G FGG G FGGG FGGG F G
Sbjct: 80 GGGFGAAGGFGGRGGGFGGGSSFGGGSGFSG 110
Score = 33.1 bits (74), Expect = 0.52
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFGG 50
G GGG GG FGGG GG FGG
Sbjct: 90 GGRGGGFGGGSSFGGGSGFSGGGFGG 115
Score = 32.3 bits (72), Expect = 0.88
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 24 GGDFGGGDFGGGDFGGGDFG-GGGSFGG 50
GG GG +G G GG +G GGGS GG
Sbjct: 555 GGSISGGGYGSGGGSGGRYGSGGGSKGG 582
Score = 31.6 bits (70), Expect = 1.5
Identities = 19/30 (63%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 25 GDFGG--GDFGGGD-FGGGD-FGGGGSFGG 50
G FGG G FGGG FGGG F GGG GG
Sbjct: 87 GGFGGRGGGFGGGSSFGGGSGFSGGGFGGG 116
Score = 31.2 bits (69), Expect = 2.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 29 GGDFGGGDFGGGDFGGGGSFGG 50
GG GGG GG +G GG GG
Sbjct: 550 GGSGGGGSISGGGYGSGGGSGG 571
Score = 30.8 bits (68), Expect = 2.6
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 20/43 (46%)
Query: 28 GGGDFGGGDF--------------------GGGDFGGGGSFGG 50
GGG FGGG F GGG FG G FGG
Sbjct: 49 GGGGFGGGGFGSRSLVGLGGTKSISISVAGGGGGFGAAGGFGG 91
Score = 28.9 bits (63), Expect = 9.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG +G G GG +G G GGS G
Sbjct: 560 GGGYGSGGGSGGRYGSGGGSKGGSISG 586
Score = 28.9 bits (63), Expect = 9.8
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 24 GGDFGGGDFGGG----DFGGGDFGGGGSFGGH 51
GG GG +G G GGG GG S GG+
Sbjct: 581 GGSISGGGYGSGGGKHSSGGGSRGGSSSGGGY 612
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 40.0 bits (92), Expect = 0.004
Identities = 19/40 (47%), Positives = 21/40 (52%)
Query: 22 PLGGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCESPTA 61
P G GGG GGG GGG GGGG GG+ Y + A
Sbjct: 74 PYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAA 113
>gi|109148552 keratin 3 [Homo sapiens]
Length = 628
Score = 40.0 bits (92), Expect = 0.004
Identities = 19/27 (70%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG FGGG FGGG GG FGG G FGG
Sbjct: 102 GGGFGGG-FGGGRGMGGGFGGAGGFGG 127
Score = 39.7 bits (91), Expect = 0.006
Identities = 19/28 (67%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 24 GGDFGGGDFGGGDFGG-GDFGGGGSFGG 50
GG FGGG GG FGG G FGG G FGG
Sbjct: 106 GGGFGGGRGMGGGFGGAGGFGGAGGFGG 133
Score = 37.7 bits (86), Expect = 0.021
Identities = 21/31 (67%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 23 LGGDFGG-GDFGG-GDFGG-GDFGGGGSFGG 50
+GG FGG G FGG G FGG G FGG G FGG
Sbjct: 115 MGGGFGGAGGFGGAGGFGGAGGFGGPGGFGG 145
Score = 33.5 bits (75), Expect = 0.40
Identities = 20/30 (66%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
Query: 24 GGDFG---GGDFGGGDFGGGDFGGGGSFGG 50
GG FG GG FGGG FGGG G GG FGG
Sbjct: 94 GGGFGSGYGGGFGGG-FGGGR-GMGGGFGG 121
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 24 GGDFGGGDFGG-GDFGG-GDFGGGGSFG 49
GG G G FGG G FGG G FGG GS G
Sbjct: 129 GGFGGAGGFGGPGGFGGSGGFGGPGSLG 156
Score = 31.6 bits (70), Expect = 1.5
Identities = 16/29 (55%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 23 LGGDFGGGDFGGGDFGGGDFGG-GGSFGG 50
LGG F G G FG G GG GG FGG
Sbjct: 550 LGGGFSAGGGSGSGFGRGGGGGIGGGFGG 578
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 23 LGGDFGGGDFGGGDFGGG-DFGGGGSFGG 50
+GG GGG GG G G GGGG GG
Sbjct: 546 MGGGLGGGFSAGGGSGSGFGRGGGGGIGG 574
Score = 30.0 bits (66), Expect = 4.4
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 4 GEGYFAMSEDELACSPYIPLGGDFGGGDFGG--GDFGGGDFGGGGSFGG 50
GE A+S ++ S G +GGG GG G GGG GGGS G
Sbjct: 515 GECPSAVSISVVSSSTTSASAGGYGGGYGGGMGGGLGGGFSAGGGSGSG 563
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 25 GDFGGGDFGGGDFGGGD--FGGGGSFG 49
G GGG GGG FGGG F GG FG
Sbjct: 565 GRGGGGGIGGG-FGGGSSGFSGGSGFG 590
Score = 28.9 bits (63), Expect = 9.8
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 25 GDFGGGD----FGGGDFGGGDFGGGGSFGG 50
G FGGG F GG GG G GG FGG
Sbjct: 78 GGFGGGRSSCAFAGGYGGGFGSGYGGGFGG 107
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 38.1 bits (87), Expect = 0.016
Identities = 18/30 (60%), Positives = 18/30 (60%)
Query: 20 YIPLGGDFGGGDFGGGDFGGGDFGGGGSFG 49
Y P GG GGG GGG GGG GGGG G
Sbjct: 447 YGPCGGGGGGGGGGGGGGGGGGGGGGGEAG 476
Score = 35.0 bits (79), Expect = 0.14
Identities = 17/28 (60%), Positives = 17/28 (60%)
Query: 23 LGGDFGGGDFGGGDFGGGDFGGGGSFGG 50
L G GGG GGG GGG GGGG GG
Sbjct: 446 LYGPCGGGGGGGGGGGGGGGGGGGGGGG 473
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFG 49
GG GGG GGG GGG+ G +G
Sbjct: 457 GGGGGGGGGGGGGGGGGEAGAVAPYG 482
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.1 bits (87), Expect = 0.016
Identities = 19/27 (70%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG FGGG GG GGG GGGGSFGG
Sbjct: 71 GGGFGGG---GGFGGGGGGGGGGSFGG 94
Score = 35.8 bits (81), Expect = 0.080
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 22 PLGGDFGGGDFGGGDFGGGDFGGGGSFGG 50
P G GGG GGG GGG FGGGG GG
Sbjct: 62 PKGAGAGGG--GGGFGGGGGFGGGGGGGG 88
Score = 34.7 bits (78), Expect = 0.18
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFG 49
GG FGG GGG GGG FGGGG G
Sbjct: 77 GGGFGG---GGGGGGGGSFGGGGPPG 99
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.1 bits (87), Expect = 0.016
Identities = 19/27 (70%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG FGGG GG GGG GGGGSFGG
Sbjct: 71 GGGFGGG---GGFGGGGGGGGGGSFGG 94
Score = 35.8 bits (81), Expect = 0.080
Identities = 18/29 (62%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 22 PLGGDFGGGDFGGGDFGGGDFGGGGSFGG 50
P G GGG GGG GGG FGGGG GG
Sbjct: 62 PKGAGAGGG--GGGFGGGGGFGGGGGGGG 88
Score = 34.7 bits (78), Expect = 0.18
Identities = 17/26 (65%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFG 49
GG FGG GGG GGG FGGGG G
Sbjct: 77 GGGFGG---GGGGGGGGSFGGGGPPG 99
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 38.1 bits (87), Expect = 0.016
Identities = 22/39 (56%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
Query: 20 YIPLGGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCES 58
++P GG GGG GGG GGG GGGG HCL CES
Sbjct: 3503 HVPTGG--GGGGSGGGGGGGG--GGGGGGSYHCL-ACES 3536
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 37.7 bits (86), Expect = 0.021
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GGG GGG GGG GGGG+ GG
Sbjct: 60 GGGGGGGGGGGGGGGGGGVGGGGAGGG 86
Score = 34.7 bits (78), Expect = 0.18
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 18 SPYIPLGGDFGGGDFGGGDFGGGDFGGGGSFGG 50
SP + G GGG GGG GGG GGG GG
Sbjct: 53 SPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGG 85
Score = 33.1 bits (74), Expect = 0.52
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFG 49
GG GGG GGG GGG GGG G
Sbjct: 65 GGGGGGGGGGGGGVGGGGAGGGAGGG 90
Score = 31.2 bits (69), Expect = 2.0
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GGG GGG GG GGG+ GG
Sbjct: 64 GGGGGGGGGGGGGGVGGGGAGGGAGGG 90
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 37.4 bits (85), Expect = 0.027
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 24 GGDFGGGDFGGGDFGG-GDFGGGGSFGG 50
GG FGGG G FGG G FGG G FGG
Sbjct: 103 GGGFGGGRGVGSGFGGAGGFGGAGGFGG 130
Score = 37.0 bits (84), Expect = 0.036
Identities = 17/27 (62%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG +GGG FGGG G FGG G FGG
Sbjct: 99 GGSYGGG-FGGGRGVGSGFGGAGGFGG 124
Score = 35.8 bits (81), Expect = 0.080
Identities = 21/31 (67%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 23 LGGDFGG-GDFGG-GDFGG-GDFGGGGSFGG 50
+G FGG G FGG G FGG G FGG GSFGG
Sbjct: 112 VGSGFGGAGGFGGAGGFGGPGVFGGPGSFGG 142
Score = 32.3 bits (72), Expect = 0.88
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 24 GGDFGGGDFGG-GDFGG-GDFGGGGSFG 49
GG G G FGG G FGG G FGG G FG
Sbjct: 120 GGFGGAGGFGGPGVFGGPGSFGGPGGFG 147
Score = 28.9 bits (63), Expect = 9.8
Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 8/32 (25%)
Query: 25 GDFGGG----DFGGGDFGGGDFGG--GGSFGG 50
G FGGG F GG +GGG FGG GG FGG
Sbjct: 79 GGFGGGRSSCGFAGG-YGGG-FGGSYGGGFGG 108
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 37.4 bits (85), Expect = 0.027
Identities = 17/28 (60%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFGGHC 52
G FGGG FGG FG +FG GG FG +C
Sbjct: 105 GGFGGGGFGGAGFGTSNFGLGG-FGPYC 131
Score = 33.9 bits (76), Expect = 0.30
Identities = 18/27 (66%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 25 GDFGGG-DFGGGDFGGGDFGGGGSFGG 50
G FGGG FG G G G FGGGG FGG
Sbjct: 89 GGFGGGRGFGVGSTGAGGFGGGG-FGG 114
Score = 33.9 bits (76), Expect = 0.30
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 24 GGDFGGGDFGGGDFGGGD---FGGGGSFGG 50
GG GGG +G G +GGG +GGG S+ G
Sbjct: 498 GGAGGGGSYGSGGYGGGSGGGYGGGRSYRG 527
Score = 32.0 bits (71), Expect = 1.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 9/36 (25%)
Query: 24 GGDFGGGDF---------GGGDFGGGDFGGGGSFGG 50
GG +GGG GG +G G GGGGS+GG
Sbjct: 516 GGGYGGGRSYRGGGARGRSGGGYGSGCGGGGGSYGG 551
Score = 28.9 bits (63), Expect = 9.8
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 29 GGDFGGGDFGGGDFGGGGSFGGH 51
GG GGG +G G +GGG S GG+
Sbjct: 498 GGAGGGGSYGSGGYGGG-SGGGY 519
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 37.0 bits (84), Expect = 0.036
Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG+ GGG GGG GGGD GGGG GG
Sbjct: 741 GGEEGGGGDGGG--GGGDGGGGGGGGG 765
Score = 33.1 bits (74), Expect = 0.52
Identities = 16/25 (64%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSF 48
GGD GGG GGD GGG GGGG +
Sbjct: 747 GGDGGGG---GGDGGGGGGGGGGPY 768
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 27 FGGGDFGGGDFGGGDFGGGGSFGG 50
FGG G GGG+ GGGG GG
Sbjct: 729 FGGPAVSGAGDGGGEEGGGGDGGG 752
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/24 (66%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 28 GGGDFGGGDFG-GGDFGGGGSFGG 50
G GD GGG+ G GGD GGGG GG
Sbjct: 736 GAGD-GGGEEGGGGDGGGGGGDGG 758
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 37.0 bits (84), Expect = 0.036
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG +GGG GGG +GGG GG G F G
Sbjct: 363 GGGWGGGGGGGGGWGGGGGGGRGGFQG 389
Score = 35.4 bits (80), Expect = 0.10
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 24 GGDFGGGDFGGGDFGG-------GDFGGGGSFGG 50
GG GGG +GGG GG GD+GG G +GG
Sbjct: 368 GGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGG 401
Score = 35.0 bits (79), Expect = 0.14
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GGG GG GGG +GGGG GG
Sbjct: 348 GGGGGGGGRGGWGGGGGGWGGGGGGGG 374
Score = 34.3 bits (77), Expect = 0.23
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 28 GGGDFGGGDFGGGDFGGGGSFG 49
GGG +GGG GGG +GGGG G
Sbjct: 362 GGGGWGGGGGGGGGWGGGGGGG 383
Score = 33.9 bits (76), Expect = 0.30
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFGG 50
G +GGG GGG GGG GG G +GG
Sbjct: 336 GGWGGGGGGGGRGGGGGGGGRGGWGG 361
Score = 33.9 bits (76), Expect = 0.30
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GG GGG +GGG GGGG GG
Sbjct: 353 GGGRGGWGGGGGGWGGGGGGGGGWGGG 379
Score = 33.1 bits (74), Expect = 0.52
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GGG GGG GGG G GG GG
Sbjct: 339 GGGGGGGGRGGGGGGGGRGGWGGGGGG 365
Score = 33.1 bits (74), Expect = 0.52
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 8/35 (22%)
Query: 24 GGDFGGGDFGG-------GDFGG-GDFGGGGSFGG 50
GG +GGG GG GD+GG G +GG G +GG
Sbjct: 373 GGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGG 407
Score = 32.0 bits (71), Expect = 1.2
Identities = 16/27 (59%), Positives = 16/27 (59%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GGG G G GGG GGGG GG
Sbjct: 349 GGGGGGGRGGWGGGGGGWGGGGGGGGG 375
Score = 32.0 bits (71), Expect = 1.2
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 24 GGDFGGGDFGGGDFG-GGDFGGGGSFGG 50
GG G G +GGG G GG GGGG +GG
Sbjct: 351 GGGGGRGGWGGGGGGWGGGGGGGGGWGG 378
Score = 30.4 bits (67), Expect = 3.4
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GG GGG G G GGGG GG
Sbjct: 332 GGGRGGWGGGGGGGGRGGGGGGGGRGG 358
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFG 49
G G G +GGG GGG GGGG G
Sbjct: 331 GGGGRGGWGGGGGGGGRGGGGGGGG 355
Score = 30.0 bits (66), Expect = 4.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSF 48
GG G +GGG GGG GGGG +
Sbjct: 406 GGRGYGDPYGGGGGGGGGGGGGGGY 430
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GG GGG GG GGGG GG
Sbjct: 343 GGGGRGGGGGGGGRGGWGGGGGGWGGG 369
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GGG GG GGG GGG GG
Sbjct: 357 GGWGGGGGGWGGGGGGGGGWGGGGGGG 383
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFGG 50
G +GG +G GGG GGGG GG
Sbjct: 403 GGYGGRGYGDPYGGGGGGGGGGGGGG 428
Score = 28.9 bits (63), Expect = 9.8
Identities = 16/27 (59%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG GG GGG GGG GGGG GG
Sbjct: 331 GGGGRGGWGGGG--GGGGRGGGGGGGG 355
Score = 28.9 bits (63), Expect = 9.8
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 24 GGDFGGGDFGGGDFG---GGDFGGGGSFGG 50
GG G G +GG +G GG GGGG GG
Sbjct: 397 GGYGGRGGYGGRGYGDPYGGGGGGGGGGGG 426
>gi|24497620 signal recognition particle 68kDa [Homo sapiens]
Length = 627
Score = 37.0 bits (84), Expect = 0.036
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 15 LACSPYIPLGGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCESPTA 61
+A +P GG GGG GGG GGG GGG GG E P+A
Sbjct: 1 MAAEKQVP-GGGGGGGSGGGGGSGGGGSGGGRGAGGEENKENERPSA 46
>gi|192807292 keratin 24 [Homo sapiens]
Length = 525
Score = 36.6 bits (83), Expect = 0.047
Identities = 18/31 (58%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 24 GGDFG----GGDFGGGDFGGGDFGGGGSFGG 50
GG FG GG FGG G FGGG SFGG
Sbjct: 65 GGGFGSCSVGGGFGGASGSGTGFGGGSSFGG 95
Score = 31.6 bits (70), Expect = 1.5
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 23 LGGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCES 58
+GG FGG G FGGG GG S G +C S
Sbjct: 73 VGGGFGGASGSGTGFGGGSSFGGVSGFGRGSGFCGS 108
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 36.6 bits (83), Expect = 0.047
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG++GGG GG GGG GG GS GG
Sbjct: 555 GGNYGGGSGSGGGSGGGYGGGSGSRGG 581
Score = 35.8 bits (81), Expect = 0.080
Identities = 19/30 (63%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 24 GGDFGGGDFGGGDFGGG---DFGGGGSFGG 50
GG FGGG GG FGGG FGG G FGG
Sbjct: 112 GGGFGGGS--GGGFGGGYGSGFGGFGGFGG 139
Score = 35.4 bits (80), Expect = 0.10
Identities = 15/28 (53%), Positives = 16/28 (57%)
Query: 23 LGGDFGGGDFGGGDFGGGDFGGGGSFGG 50
LGG FGGG G G GG + G FGG
Sbjct: 86 LGGGFGGGSRGFGGASGGGYSSSGGFGG 113
Score = 35.4 bits (80), Expect = 0.10
Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGGH 51
GG +GGG GG GGG GGGS GGH
Sbjct: 517 GGSYGGGSGSGGGSGGG--YGGGSGGGH 542
Score = 34.7 bits (78), Expect = 0.18
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 24 GGDFGGGDFGGGDFGGGDFGG--GGSFGGH 51
GG G G GG +GGG GG GGS GGH
Sbjct: 521 GGGSGSGGGSGGGYGGGSGGGHSGGSGGGH 550
Score = 34.3 bits (77), Expect = 0.23
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 24 GGDFGGGDFG----GGDFGGGDFGGGGSFGGH 51
GG +GGG GG +GGG GGGS GG+
Sbjct: 503 GGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGY 534
Score = 33.9 bits (76), Expect = 0.30
Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 21 IPLGGDFG-GGDFGGGDFGG--GDFGGGGSFGGH 51
I LGG G GG +G G GG G +GGGGS GG+
Sbjct: 473 IGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGGY 506
Score = 33.9 bits (76), Expect = 0.30
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 24 GGDFG-------GGDFGGGDFGGGDFGGGGSFGG 50
GG +G GG +GGG GGG GG GS GG
Sbjct: 482 GGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGG 515
Score = 33.5 bits (75), Expect = 0.40
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 25 GDFGGGDFGG--GDFGGGDFGGGGSFGGH 51
G GGG GG G++GGG GGGS GG+
Sbjct: 544 GGSGGGHSGGSGGNYGGGSGSGGGSGGGY 572
Score = 33.1 bits (74), Expect = 0.52
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 24 GGDFGGGDFGG--GDFGGGDFGG-GGSFGG 50
GG +GGG GG G GGG GG GG++GG
Sbjct: 531 GGGYGGGSGGGHSGGSGGGHSGGSGGNYGG 560
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 24 GGDFGGGDFGGGDFGGGD---FGGGGSFGG 50
GG +GGG GG +GGG G GGS+GG
Sbjct: 494 GGSYGGGG-SGGGYGGGSGSRGGSGGSYGG 522
Score = 32.0 bits (71), Expect = 1.2
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGGH 51
GG G G GG +GGG GGS G H
Sbjct: 559 GGGSGSGGGSGGGYGGGSGSRGGSGGSH 586
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG F GGG FGGG G GG+ GG
Sbjct: 78 GGGFSASSLGGG-FGGGSRGFGGASGG 103
Score = 31.2 bits (69), Expect = 2.0
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
Query: 24 GGDFGGGD-----FGGGDFGGGDFGG--GGSFGG 50
GG +GGG GG GG FGG GGS+GG
Sbjct: 569 GGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGG 602
Score = 30.8 bits (68), Expect = 2.6
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 24 GGDFGGGD-FGG---GDFGGGD--FGGGGSFGG 50
GG GGG FGG G +GGG+ G GG +GG
Sbjct: 583 GGSHGGGSGFGGESGGSYGGGEEASGSGGGYGG 615
Score = 30.4 bits (67), Expect = 3.4
Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 24 GGDFGGG---DFGG-GDFGGGDFGGGG 46
GG FGGG FGG G FGGG GG G
Sbjct: 120 GGGFGGGYGSGFGGFGGFGGGAGGGDG 146
Score = 30.0 bits (66), Expect = 4.4
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 24 GGDFGGGDFGGGDFGGGDFGG-GGSFG 49
GG G FGGG FGGG GG GG +G
Sbjct: 103 GGYSSSGGFGGG-FGGGSGGGFGGGYG 128
Score = 30.0 bits (66), Expect = 4.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 24 GGDFGGGDFGGGDFG-----GGDFGGGGSFGG 50
GG GGG GG G GG++GGG GG
Sbjct: 535 GGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGG 566
Score = 29.6 bits (65), Expect = 5.7
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 24 GGDFGG--GDFGGGDFGGGDFGGGGSFGG 50
GG GG G++GGG GG G GG +GG
Sbjct: 548 GGHSGGSGGNYGGGSGSGG--GSGGGYGG 574
Score = 29.6 bits (65), Expect = 5.7
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 24 GGDFGGGDFGGGD----FGGGDFGGGGSFGG 50
GG GGG +GGG GG GGG FGG
Sbjct: 565 GGGSGGG-YGGGSGSRGGSGGSHGGGSGFGG 594
Score = 28.9 bits (63), Expect = 9.8
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 24 GGDFG-------GGDFGGGDFGGGDFGGGGSFGG 50
GG FG GG F GGG GG FGG
Sbjct: 66 GGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGG 99
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 36.6 bits (83), Expect = 0.047
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 5/33 (15%)
Query: 25 GDFGGG---DFGGGD-FG-GGDFGGGGSFGGHC 52
G+FGGG FGG D FG GG+F G G FGG C
Sbjct: 200 GNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSC 232
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 24 GGDFGGGDFGGGDFG-------GGDFGGGGSF 48
GG GGG +GG G G +FGGGGS+
Sbjct: 229 GGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSY 260
Score = 29.6 bits (65), Expect = 5.7
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Query: 24 GGDFGGGD-FG-GGDFGG-GDFGG---GGSFGG 50
G FGG D FG GG+F G G FGG GG +GG
Sbjct: 207 GDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG 239
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGG 46
GG+F G GG GGG +GG G
Sbjct: 219 GGNFSGRGGFGGSCGGGGYGGSG 241
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 36.6 bits (83), Expect = 0.047
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 5/33 (15%)
Query: 25 GDFGGG---DFGGGD-FG-GGDFGGGGSFGGHC 52
G+FGGG FGG D FG GG+F G G FGG C
Sbjct: 200 GNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSC 232
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 24 GGDFGGGDFGGGDFG-------GGDFGGGGSF 48
GG GGG +GG G G +FGGGGS+
Sbjct: 229 GGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSY 260
Score = 29.6 bits (65), Expect = 5.7
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Query: 24 GGDFGGGD-FG-GGDFGG-GDFGG---GGSFGG 50
G FGG D FG GG+F G G FGG GG +GG
Sbjct: 207 GDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGG 239
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGG 46
GG+F G GG GGG +GG G
Sbjct: 219 GGNFSGRGGFGGSCGGGGYGGSG 241
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 36.6 bits (83), Expect = 0.047
Identities = 18/29 (62%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 24 GGDFG-GGDFGG-GDFGGGDFGGGGSFGG 50
GG+FG GG+FGG G +GGG G GS+GG
Sbjct: 234 GGNFGRGGNFGGRGGYGGGGGGSRGSYGG 262
Score = 35.0 bits (79), Expect = 0.14
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 4/29 (13%)
Query: 24 GGDFGGGDFGG----GDFGGGDFGGGGSF 48
GG GGG + G G+FGGG++GGGG++
Sbjct: 301 GGYGGGGGYDGYNEGGNFGGGNYGGGGNY 329
Score = 34.3 bits (77), Expect = 0.23
Identities = 15/22 (68%), Positives = 18/22 (81%), Gaps = 3/22 (13%)
Query: 29 GGDFGGGDFGGGDFGGGGSFGG 50
GG+FGG GGG+FG GG+FGG
Sbjct: 227 GGNFGG---GGGNFGRGGNFGG 245
Score = 33.1 bits (74), Expect = 0.52
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 13/40 (32%)
Query: 24 GGDFGG------------GDFGGGDFGGGDFGG-GGSFGG 50
GG+FGG G +GGGD G FGG GG++GG
Sbjct: 240 GGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGG 279
Score = 32.0 bits (71), Expect = 1.2
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFGGH 51
G +GGG G G+ GGG +GGGG + G+
Sbjct: 287 GGYGGGGPGYGNQGGG-YGGGGGYDGY 312
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 8/34 (23%)
Query: 25 GDFGGGDFGGGDFG--GGDFGGG------GSFGG 50
G +GGGD G FG GG++GGG G +GG
Sbjct: 258 GSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGG 291
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 24 GGDFGGGDFGGGDFGGGDFGG---GGSFGG 50
GG G G+ GGG GGG + G GG+FGG
Sbjct: 291 GGGPGYGNQGGGYGGGGGYDGYNEGGNFGG 320
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG +GGG G GG+FGGG GG
Sbjct: 300 GGGYGGGGGYDGYNEGGNFGGGNYGGG 326
Score = 30.0 bits (66), Expect = 4.4
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG+FGGG++GG GG++ G++ G
Sbjct: 315 GGNFGGGNYGG----GGNYNDFGNYSG 337
Score = 29.6 bits (65), Expect = 5.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 18 SPYIPLGGDFGGGDFGGGDFGGGDFGGGGSFG 49
S Y P+ G GG G +GGG GGGS G
Sbjct: 341 SNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGG 372
Score = 29.6 bits (65), Expect = 5.7
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 25 GDFGGGDFGGGDFG---GGDFGGGGSFGGH 51
G GG FGG G GG +G GG GG+
Sbjct: 344 GPMKGGSFGGRSSGSPYGGGYGSGGGSGGY 373
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 36.2 bits (82), Expect = 0.061
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 20 YIPLGGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDY 55
Y GG GG +GG D+G G FGG GS+ H Y
Sbjct: 231 YNAYGGGGGGSSYGGSDYGNG-FGGFGSYSQHQSSY 265
Score = 31.6 bits (70), Expect = 1.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 6 GYFAMSEDELACSPYIPLGGDFGGGDFGGGDFGG----GDFGGGGSFGG 50
G+ + S+ + + P GG GGG GG G +GGGG +GG
Sbjct: 254 GFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRGGYGGGGGYGG 302
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 20 YIPLGGDFGGGDFGGGDFGGGDFGGGGSFGG 50
Y GG GGG G +GGG GGG S+GG
Sbjct: 217 YNSYGGYGGGGGGGYNAYGGG--GGGSSYGG 245
>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
B1 [Homo sapiens]
Length = 353
Score = 35.8 bits (81), Expect = 0.080
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 18 SPYIPL-GGDFGG-----GDFGGGDFGGGDFGGGGSFGG 50
S Y P+ G+FGG G +GGG++G G GG G +GG
Sbjct: 311 SNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGG 349
Score = 30.8 bits (68), Expect = 2.6
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 24 GGDFGGG--DFGGGDFGGGDFGGGGSFGGHCLDY 55
GG +GGG ++GGG++G G++ G++ +Y
Sbjct: 280 GGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNY 313
Score = 30.4 bits (67), Expect = 3.4
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 20 YIPLGGDFGGGDFGG--------GDFGGGDFGGGGSFGGH 51
Y GG GGG+FGG G +GGG G G GG+
Sbjct: 244 YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 283
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 24 GGDFGGG--DFGGGDFGGGDFGGGGSFGG 50
G FG G +GGG GGG+FGG +GG
Sbjct: 237 GRGFGDGYNGYGGGP-GGGNFGGSPGYGG 264
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFGG 50
G +GGG G G+ GGG GG ++GG
Sbjct: 267 GGYGGGGPGYGNQGGGYGGGYDNYGG 292
Score = 28.9 bits (63), Expect = 9.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFG 49
GG G G+ GGG GG D GGG++G
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYG 296
>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
[Homo sapiens]
Length = 341
Score = 35.8 bits (81), Expect = 0.080
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 18 SPYIPL-GGDFGG-----GDFGGGDFGGGDFGGGGSFGG 50
S Y P+ G+FGG G +GGG++G G GG G +GG
Sbjct: 299 SNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGG 337
Score = 30.8 bits (68), Expect = 2.6
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 24 GGDFGGG--DFGGGDFGGGDFGGGGSFGGHCLDY 55
GG +GGG ++GGG++G G++ G++ +Y
Sbjct: 268 GGGYGGGYDNYGGGNYGSGNYNDFGNYNQQPSNY 301
Score = 30.4 bits (67), Expect = 3.4
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 20 YIPLGGDFGGGDFGG--------GDFGGGDFGGGGSFGGH 51
Y GG GGG+FGG G +GGG G G GG+
Sbjct: 232 YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 271
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 24 GGDFGGG--DFGGGDFGGGDFGGGGSFGG 50
G FG G +GGG GGG+FGG +GG
Sbjct: 225 GRGFGDGYNGYGGGP-GGGNFGGSPGYGG 252
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 25 GDFGGGDFGGGDFGGGDFGGGGSFGG 50
G +GGG G G+ GGG GG ++GG
Sbjct: 255 GGYGGGGPGYGNQGGGYGGGYDNYGG 280
Score = 28.9 bits (63), Expect = 9.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFG 49
GG G G+ GGG GG D GGG++G
Sbjct: 259 GGGPGYGNQGGGYGGGYDNYGGGNYG 284
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 35.4 bits (80), Expect = 0.10
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 22 PLG-GDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCESPTAHCNVLNW 68
P+G G +GGG GGG GG GGGG G + P C +N+
Sbjct: 391 PMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNF 438
Score = 33.1 bits (74), Expect = 0.52
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 24 GGDFGGGDFGGGDFGGGDFGG---GGSFGG---HCLDY-CESPTAHCNVLNW 68
GG G G +GGG GGG GG GG GG D+ C +PT +W
Sbjct: 389 GGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSW 440
Score = 32.7 bits (73), Expect = 0.68
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGG 50
GG+ GG GG G G +GGGGS GG
Sbjct: 379 GGNGRGGRGRGGPMGRGGYGGGGSGGG 405
Score = 31.2 bits (69), Expect = 2.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFG 49
GG GG G G +GGG GGGG G
Sbjct: 384 GGRGRGGPMGRGGYGGGGSGGGGRGG 409
Score = 29.3 bits (64), Expect = 7.5
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 12/40 (30%)
Query: 24 GGDFGGGDFG------------GGDFGGGDFGGGGSFGGH 51
GG GGG++G GG +G D GGG GG+
Sbjct: 169 GGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGY 208
Score = 29.3 bits (64), Expect = 7.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 28 GGGDFGGGDFGGGDFGGGGSFGG 50
GGG G G GG D GG FGG
Sbjct: 245 GGGRGGRGGMGGSDRGGFNKFGG 267
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 35.4 bits (80), Expect = 0.10
Identities = 21/53 (39%), Positives = 24/53 (45%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCESPTAHCNVLNWEQVQRLDG 76
GG GGG GGG GGG GGGG E+ T+ + E R DG
Sbjct: 227 GGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDG 279
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 35.4 bits (80), Expect = 0.10
Identities = 21/53 (39%), Positives = 24/53 (45%)
Query: 24 GGDFGGGDFGGGDFGGGDFGGGGSFGGHCLDYCESPTAHCNVLNWEQVQRLDG 76
GG GGG GGG GGG GGGG E+ T+ + E R DG
Sbjct: 211 GGGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDG 263
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,424,549
Number of Sequences: 37866
Number of extensions: 833843
Number of successful extensions: 6100
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3259
Number of HSP's gapped (non-prelim): 1472
length of query: 442
length of database: 18,247,518
effective HSP length: 105
effective length of query: 337
effective length of database: 14,271,588
effective search space: 4809525156
effective search space used: 4809525156
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.