Guide to the Human Genome
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Name: FAM46B Sequence: fasta or formatted (425aa) NCBI GI: 209862821
Description:

hypothetical protein LOC115572

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         45           3
 C cysteine            1.9          8           1
 D aspartate           4.5         19           1
 E glutamate           5.4         23           2
 F phenylalanine       4.0         17           2
 G glycine             6.4         27           3
 H histidine           3.5         15           1
 I isoleucine          2.8         12           2
 K lysine              2.6         11           1
 L leucine            12.5         53           3
 M methionine          1.2          5           2
 N asparagine          1.6          7           1
 P proline             6.4         27           2
 Q glutamine           4.0         17           1
 R arginine            8.0         34           2
 S serine              7.5         32           2
 T threonine           5.6         24           1
 V valine              8.2         35           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.4         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC115572 
FAM46A                0.566   hypothetical protein LOC55603 
FAM46C                0.544   hypothetical protein LOC54855 
FAM46D                0.428   hypothetical protein LOC169966 
ARX                   0.011   aristaless related homeobox 
NRG3                  0.008   neuregulin 3 
EPN1                  0.006   epsin 1 isoform c 
EPN1                  0.006   epsin 1 isoform b 
EPN1                  0.006   epsin 1 isoform a 
SEC31A                0.006   SEC31 homolog A isoform 3 
VAX1                  0.006   ventral anterior homeobox 1 isoform a 
ZNF579                0.006   zinc finger protein 579 
HOXA13                0.006   homeobox A13 
SYVN1                 0.005   synoviolin 1 isoform a 
STK39                 0.005   serine threonine kinase 39 (STE20/SPS1 homolog, yea...
DEAF1                 0.005   deformed epidermal autoregulatory factor 1 
AHCYL2                0.005   S-adenosylhomocysteine hydrolase-like 2 isoform b [...
AHCYL2                0.005   S-adenosylhomocysteine hydrolase-like 2 isoform a [H...
LOC100133224          0.005   PREDICTED: similar to hCG2041320 
LOC100133224          0.005   PREDICTED: similar to hCG2041320 
LOC100294411          0.005   PREDICTED: similar to deformed epidermal autoregula...
LOC100133224          0.005   PREDICTED: similar to hCG2041320 
SFRS15                0.005   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.005   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.005   splicing factor, arginine/serine-rich 15 isoform 1 [...
ZIC3                  0.005   zinc finger protein of the cerebellum 3 
NOVA2                 0.005   neuro-oncological ventral antigen 2 
AP3D1                 0.005   adaptor-related protein complex 3, delta 1 subunit ...
AP3D1                 0.005   adaptor-related protein complex 3, delta 1 subunit ...
PCSK6                 0.005   paired basic amino acid cleaving system 4 isoform e ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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