Guide to the Human Genome
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Name: FAM46C Sequence: fasta or formatted (391aa) NCBI GI: 38570095
Description:

hypothetical protein LOC54855

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         15           2
 C cysteine            2.6         10           1
 D aspartate           5.6         22           1
 E glutamate           7.7         30           3
 F phenylalanine       5.1         20           2
 G glycine             4.1         16           3
 H histidine           2.8         11           1
 I isoleucine          5.4         21           2
 K lysine              4.3         17           1
 L leucine            11.8         46           2
 M methionine          1.5          6           1
 N asparagine          5.6         22           2
 P proline             4.6         18           2
 Q glutamine           3.8         15           2
 R arginine            5.9         23           2
 S serine              7.2         28           2
 T threonine           5.1         20           1
 V valine              8.4         33           2
 W tryptophan          0.8          3           1
 Y tyrosine            3.8         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54855 
FAM46A                0.691   hypothetical protein LOC55603 
FAM46B                0.583   hypothetical protein LOC115572 
FAM46D                0.553   hypothetical protein LOC169966 
PPL                   0.005   periplakin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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