Guide to the Human Genome
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Name: UNC5B Sequence: fasta or formatted (945aa) NCBI GI: 32261318
Description:

unc-5 homolog B

Referenced in:

Netrins and Laminins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         75           2
 C cysteine            3.7         35           1
 D aspartate           5.2         49           2
 E glutamate           5.5         52           2
 F phenylalanine       2.8         26           1
 G glycine             7.1         67           2
 H histidine           2.2         21           1
 I isoleucine          3.2         30           2
 K lysine              3.7         35           2
 L leucine            12.0        113           3
 M methionine          1.3         12           1
 N asparagine          3.2         30           1
 P proline             6.6         62           3
 Q glutamine           4.3         41           2
 R arginine            5.1         48           2
 S serine              7.9         75           3
 T threonine           7.1         67           2
 V valine              6.3         60           3
 W tryptophan          2.0         19           1
 Y tyrosine            3.0         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   unc-5 homolog B 
UNC5C                 0.616   unc5C 
UNC5D                 0.510   unc-5 homolog D 
UNC5A                 0.403   netrin receptor Unc5h1 
HMCN1                 0.056   hemicentin 1 
THBS2                 0.044   thrombospondin 2 precursor 
SEMA5A                0.043   semaphorin 5A 
THBS1                 0.042   thrombospondin 1 precursor 
BAI1                  0.042   brain-specific angiogenesis inhibitor 1 precursor [...
SEMA5B                0.042   semaphorin 5B isoform 1 
BAI3                  0.041   brain-specific angiogenesis inhibitor 3 
CFP                   0.041   complement factor properdin precursor 
CFP                   0.041   complement factor properdin precursor 
BAI2                  0.040   brain-specific angiogenesis inhibitor 2 
UNC5CL                0.040   unc-5 homolog C-like 
SSPO                  0.037   SCO-spondin 
ROBO2                 0.026   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.026   roundabout, axon guidance receptor, homolog 2 isofor...
TJP1                  0.024   tight junction protein 1 isoform b 
TJP1                  0.024   tight junction protein 1 isoform a 
ROBO1                 0.024   roundabout 1 isoform d 
ROBO1                 0.024   roundabout 1 isoform c 
ROBO1                 0.024   roundabout 1 isoform b 
LOC642132             0.024   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.024   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.023   roundabout 1 isoform a 
ADAMTS16              0.023   ADAM metallopeptidase with thrombospondin type 1 mo...
ROBO3                 0.022   roundabout, axon guidance receptor, homolog 3 
ADAMTS4               0.021   ADAM metallopeptidase with thrombospondin type 1 mo...
SPON1                 0.021   spondin 1, extracellular matrix protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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