Guide to the Human Genome
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Name: LOC126987 Sequence: fasta or formatted (274aa) NCBI GI: 239741226
Description:

PREDICTED: similar to hCG2040319

Not currently referenced in the text

Other entries for this name:
alt mRNA {274aa} PREDICTED: similar to hCG2040319
alt mRNA {274aa} PREDICTED: similar to hCG2040319
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         26           2
 C cysteine            1.8          5           1
 D aspartate           6.9         19           2
 E glutamate           4.4         12           1
 F phenylalanine       1.8          5           1
 G glycine             3.6         10           2
 H histidine           2.2          6           1
 I isoleucine          2.2          6           2
 K lysine              6.2         17           4
 L leucine             8.0         22           3
 M methionine          2.2          6           1
 N asparagine          1.5          4           1
 P proline             7.7         21           2
 Q glutamine           6.2         17           2
 R arginine            9.5         26           3
 S serine             11.3         31           2
 T threonine           6.9         19           2
 V valine              3.3          9           1
 W tryptophan          2.9          8           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040319 
LOC126987             1.000   PREDICTED: similar to hCG2040319 
LOC126987             1.000   PREDICTED: similar to hCG2040319 
TJP3                  0.498   tight junction protein 3 
TJP2                  0.125   tight junction protein 2 (zona occludens 2) isoform ...
TJP2                  0.123   tight junction protein 2 (zona occludens 2) isoform ...
TJP1                  0.115   tight junction protein 1 isoform a 
TJP1                  0.106   tight junction protein 1 isoform b 
SAPS1                 0.022   SAPS domain family, member 1 
KIAA1462              0.019   hypothetical protein LOC57608 
PPP1R12C              0.019   protein phosphatase 1, regulatory subunit 12C 
C9orf84               0.015   hypothetical protein LOC158401 isoform 2 
C9orf84               0.015   hypothetical protein LOC158401 isoform 1 
PPFIBP2               0.015   PTPRF interacting protein, binding protein 2 (lipri...
GNAS                  0.015   GNAS complex locus NESP55 
AHCYL2                0.013   S-adenosylhomocysteine hydrolase-like 2 isoform b [...
AHCYL2                0.013   S-adenosylhomocysteine hydrolase-like 2 isoform a [H...
GMIP                  0.013   GEM interacting protein 
NCOR1                 0.013   nuclear receptor co-repressor 1 
DLG1                  0.013   discs, large homolog 1 isoform 1 
DLG1                  0.013   discs, large homolog 1 isoform 2 
WNK4                  0.013   WNK lysine deficient protein kinase 4 
KIF26B                0.013   kinesin family member 26B 
FLJ31945              0.011   PREDICTED: hypothetical protein 
LOC100290241          0.011   PREDICTED: hypothetical protein XP_002347740 
LOC100288617          0.011   PREDICTED: hypothetical protein XP_002343538 
LOC729978             0.011   PREDICTED: NPIP-like protein 2 isoform 2 
FLJ31945              0.011   PREDICTED: hypothetical protein 
LOC643355             0.011   PREDICTED: hypothetical protein 
FLJ31945              0.011   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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