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Search of human proteins with 116812584
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116812584 SID1 transmembrane family, member 1 [Homo sapiens]
(827 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116812584 SID1 transmembrane family, member 1 [Homo sapiens] 1667 0.0
gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens] 947 0.0
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 36 0.13
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 33 1.1
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 33 1.1
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 33 1.1
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 33 1.1
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 33 1.1
gi|194248095 epsin 1 isoform b [Homo sapiens] 32 2.4
gi|194272148 epsin 1 isoform a [Homo sapiens] 32 2.4
gi|194018748 CD6 molecule [Homo sapiens] 31 4.1
gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 31 4.1
gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 31 4.1
gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 31 4.1
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens] 31 5.4
gi|5032151 TBP-associated factor 11 [Homo sapiens] 30 7.0
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 30 7.0
gi|62865866 homeobox B13 [Homo sapiens] 30 7.0
gi|51317355 RNA binding motif, single stranded interacting prote... 30 7.0
gi|51317353 RNA binding motif, single stranded interacting prote... 30 7.0
gi|51317351 RNA binding motif, single stranded interacting prote... 30 7.0
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 30 7.0
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 30 7.0
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 30 7.0
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 30 7.0
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 30 9.2
gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo ... 30 9.2
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 30 9.2
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 30 9.2
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 30 9.2
>gi|116812584 SID1 transmembrane family, member 1 [Homo sapiens]
Length = 827
Score = 1667 bits (4316), Expect = 0.0
Identities = 827/827 (100%), Positives = 827/827 (100%)
Query: 1 MRGCLRLALLCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHVYSGVVNLST 60
MRGCLRLALLCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHVYSGVVNLST
Sbjct: 1 MRGCLRLALLCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHVYSGVVNLST 60
Query: 61 ENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSY 120
ENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSY
Sbjct: 61 ENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSY 120
Query: 121 NYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFT 180
NYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFT
Sbjct: 121 NYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFT 180
Query: 181 ASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSM 240
ASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSM
Sbjct: 181 ASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSM 240
Query: 241 TKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFIQEKENQTWNLQRKKNLEVTIVPS 300
TKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFIQEKENQTWNLQRKKNLEVTIVPS
Sbjct: 241 TKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFIQEKENQTWNLQRKKNLEVTIVPS 300
Query: 301 IKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSIDGSFGSNDGSGNMVASHPIA 360
IKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSIDGSFGSNDGSGNMVASHPIA
Sbjct: 301 IKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSIDGSFGSNDGSGNMVASHPIA 360
Query: 361 ASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNIIRT 420
ASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNIIRT
Sbjct: 361 ASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNIIRT 420
Query: 421 KMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICY 480
KMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICY
Sbjct: 421 KMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICY 480
Query: 481 YNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPK 540
YNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPK
Sbjct: 481 YNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPK 540
Query: 541 HFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINAS 600
HFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINAS
Sbjct: 541 HFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINAS 600
Query: 601 AYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDLGIF 660
AYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDLGIF
Sbjct: 601 AYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDLGIF 660
Query: 661 RRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICN 720
RRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICN
Sbjct: 661 RRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICN 720
Query: 721 LLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAESREKNR 780
LLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAESREKNR
Sbjct: 721 LLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAESREKNR 780
Query: 781 ECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF 827
ECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF
Sbjct: 781 ECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF 827
>gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens]
Length = 832
Score = 947 bits (2447), Expect = 0.0
Identities = 475/804 (59%), Positives = 600/804 (74%), Gaps = 22/804 (2%)
Query: 44 RGADFDHVYSGVVNLSTENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEV 103
+ A+F+ Y VN NIY+FN+T ++ VRV VN ++ P+L VVRQ++ V
Sbjct: 31 KDAEFERTYVDEVNSELVNIYTFNHTVTRNRTEGVRVSVNVLNKQKGAPLLFVVRQKEAV 90
Query: 104 LSWQVPLLFQGLYQRSYNYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLV 163
+S+QVPL+ +G++QR Y YQ+V RTLC NE+ Q +VDV++++P+ Y+L V
Sbjct: 91 VSFQVPLILRGMFQRKYLYQKVERTLCQPPTKNESEI--QFFYVDVSTLSPVNTTYQLRV 148
Query: 164 TKLKHFQLRTNVAFHFTASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCP 223
+++ F LRT F F + +QPQYF Y+FP+ VDSVI+KV S A+PCSV+S+Q+++CP
Sbjct: 149 SRMDDFVLRTGEQFSFNTTAAQPQYFKYEFPEGVDSVIVKVTSNKAFPCSVISIQDVLCP 208
Query: 224 VYDLDHNVEFNGVYQSMTKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGS--FFIQEKE 281
VYDLD+NV F G+YQ+MTKKAAIT+Q+KDFP F+VV V+K ED ACGGS F+ ++
Sbjct: 209 VYDLDNNVAFIGMYQTMTKKAAITVQRKDFPSNSFYVVVVVKTEDQACGGSLPFYPFAED 268
Query: 282 NQTWNLQRKKNLEVTIVPSIKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSID 341
R+K L V + ++ YV LF + IFLSFYL +L+ R ++K++
Sbjct: 269 EPVDQGHRQKTLSVLVSQAVTSEAYVSGMLFCLGIFLSFYLLTVLLACWENWRQKKKTLL 328
Query: 342 GSFGS---NDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGG--------- 389
+ G ++A +S EG NYG+ + S S + S+ G
Sbjct: 329 VAIDRACPESGHPRVLADSFPGSSPYEGYNYGSFENVSGSTDGLVDSAGTGDLSYGYQGR 388
Query: 390 ---PPG---QSDTDSSVEESDFDTMPDIESDKNIIRTKMFLYLSDLSRKDRRIVSKKYKI 443
P G + D+ SSVEE D+DT+ DI+SDKN+IRTK +LY++DL+RKD+R++ KKY+I
Sbjct: 389 SFEPVGTRPRVDSMSSVEEDDYDTLTDIDSDKNVIRTKQYLYVADLARKDKRVLRKKYQI 448
Query: 444 YFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLG 503
YFWNI TIAVFYALPV+QLVITYQTVVNVTGNQDICYYNFLCAHPLG LSAFNNILSNLG
Sbjct: 449 YFWNIATIAVFYALPVVQLVITYQTVVNVTGNQDICYYNFLCAHPLGNLSAFNNILSNLG 508
Query: 504 HVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPKHFGLFYAMGIALMMEGVLSACYH 563
++LLG LFLLI+L+R+I H RAL D+ A+E GIPKHFGLFYAMG ALMMEG+LSACYH
Sbjct: 509 YILLGLLFLLIILQREINHNRALLRNDLCALECGIPKHFGLFYAMGTALMMEGLLSACYH 568
Query: 564 VCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYSAYASFAVVIMVTVLGVVFGK 623
VCPNY+NFQFDTSFMYMIAGLCMLKLYQ RHPDINASAYSAYA A+VI +VLGVVFGK
Sbjct: 569 VCPNYTNFQFDTSFMYMIAGLCMLKLYQKRHPDINASAYSAYACLAIVIFFSVLGVVFGK 628
Query: 624 NDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDLGIFRRAAMVFYTDCIQQCSRPLYMDR 683
+ FW++FS IH++A+L LSTQ+YYMGR+K+D GIFRR V YTDCI+QCS PLY+DR
Sbjct: 629 GNTAFWIVFSIIHIIATLLLSTQLYYMGRWKLDSGIFRRILHVLYTDCIRQCSGPLYVDR 688
Query: 684 MVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVP 743
MVLLV+GN++NWS A +GLI RP DFASY+L I ICNLLLY AFYIIMKLRS E++ +P
Sbjct: 689 MVLLVMGNVINWSLAAYGLIMRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIP 748
Query: 744 LFCIVATAVMWAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALF 803
L CIV T+V+W AL+FFFQ LS+W+ TPAESRE NR+CILLDFFDDHDIWHFLS+ A+F
Sbjct: 749 LLCIVCTSVVWGFALFFFFQGLSTWQKTPAESREHNRDCILLDFFDDHDIWHFLSSIAMF 808
Query: 804 FSFLVLLTLDDDLDVVRRDQIPVF 827
SFLVLLTLDDDLD V+RD+I VF
Sbjct: 809 GSFLVLLTLDDDLDTVQRDKIYVF 832
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 36.2 bits (82), Expect = 0.13
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 343 SFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEE 402
S S+D S + +S ST S DESSSS SS+ SD+DSS
Sbjct: 90 SSSSSDSSASDSSSESEETSTSSSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSS-SS 148
Query: 403 SDFDTMPDIESD 414
S T D SD
Sbjct: 149 SSSSTSTDSSSD 160
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 33.1 bits (74), Expect = 1.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 343 SFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQS 394
S GS G G + A +A+STP ++ G+ SSSS SSS S
Sbjct: 112 SNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
Score = 31.2 bits (69), Expect = 4.1
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 342 GSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDG-GP-PGQS--DTD 397
G G G + +S PI AST S+ + SSSS SSS GP PG+ T
Sbjct: 117 GGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTP 176
Query: 398 SSVEES 403
S VE +
Sbjct: 177 SPVENT 182
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 33.1 bits (74), Expect = 1.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 343 SFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQS 394
S GS G G + A +A+STP ++ G+ SSSS SSS S
Sbjct: 112 SNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
Score = 31.2 bits (69), Expect = 4.1
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 342 GSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDG-GP-PGQS--DTD 397
G G G + +S PI AST S+ + SSSS SSS GP PG+ T
Sbjct: 117 GGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTP 176
Query: 398 SSVEES 403
S VE +
Sbjct: 177 SPVENT 182
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 33.1 bits (74), Expect = 1.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 343 SFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQS 394
S GS G G + A +A+STP ++ G+ SSSS SSS S
Sbjct: 112 SNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
Score = 31.2 bits (69), Expect = 4.1
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 342 GSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDG-GP-PGQS--DTD 397
G G G + +S PI AST S+ + SSSS SSS GP PG+ T
Sbjct: 117 GGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGKPVYSTP 176
Query: 398 SSVEES 403
S VE +
Sbjct: 177 SPVENT 182
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 33.1 bits (74), Expect = 1.1
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 342 GSFGSNDGSGNMVASHPIAAST-PEGSNYGTIDESSSSPGRQMS---SSDGGPPGQSDTD 397
G GS G G +S + +S EG G S++S GR+ S SSDG P + D++
Sbjct: 163 GPRGSQGGGGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSE 222
Query: 398 SSVEESDFDTMPDIESDKN 416
S+ + D I S ++
Sbjct: 223 DSISSTIMDVDSTISSGRS 241
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 33.1 bits (74), Expect = 1.1
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 342 GSFGSNDGSGNMVASHPIAAST-PEGSNYGTIDESSSSPGRQMS---SSDGGPPGQSDTD 397
G GS G G +S + +S EG G S++S GR+ S SSDG P + D++
Sbjct: 163 GPRGSQGGGGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRGSLEMSSDGEPLSRMDSE 222
Query: 398 SSVEESDFDTMPDIESDKN 416
S+ + D I S ++
Sbjct: 223 DSISSTIMDVDSTISSGRS 241
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 32.0 bits (71), Expect = 2.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 364 PEGSNYGTIDESSSS------PGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNI 417
P GS+ G + S S P S GG P + T+ + FDT PD SD +
Sbjct: 350 PWGSSDGGVPVSGPSASDPWTPAPAFSDPWGGSPAKPSTNGTTAAGGFDTEPDEFSDFDR 409
Query: 418 IRTKM 422
+RT +
Sbjct: 410 LRTAL 414
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 32.0 bits (71), Expect = 2.4
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 364 PEGSNYGTIDESSSS------PGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNI 417
P GS+ G + S S P S GG P + T+ + FDT PD SD +
Sbjct: 436 PWGSSDGGVPVSGPSASDPWTPAPAFSDPWGGSPAKPSTNGTTAAGGFDTEPDEFSDFDR 495
Query: 418 IRTKM 422
+RT +
Sbjct: 496 LRTAL 500
>gi|194018748 CD6 molecule [Homo sapiens]
Length = 668
Score = 31.2 bits (69), Expect = 4.1
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 295 VTIVPSIKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSIDGSFGSNDGSGNMV 354
VTI S+ + K S + + S LG LL+G + ++ F I G + MV
Sbjct: 381 VTIESSVTVKIENKESRELMLLIPSIVLGILLLGSLIFIAFILLRIKGKY----ALPVMV 436
Query: 355 ASHPIAASTPEGSN-YGTIDESSSSPGRQMSSSDGGPP---GQSDTDSSVEESDFDTMPD 410
+ + P GSN Y + + + PP S +DS E DF P
Sbjct: 437 NHQHLPTTIPAGSNSYQPVPITIPKEVFMLPIQVQAPPPEDSDSGSDSDYEHYDFSAQPP 496
Query: 411 I 411
+
Sbjct: 497 V 497
>gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 31.2 bits (69), Expect = 4.1
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 2 RGCLRLAL---LCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHV 51
R CLR LC LP L A PG +P PPA RR R F V
Sbjct: 159 RPCLRFLPQPPLCGLPGALALAVPGPCLSAPPSPPAARRSSLLPERLTGFTSV 211
>gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 31.2 bits (69), Expect = 4.1
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 2 RGCLRLAL---LCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHV 51
R CLR LC LP L A PG +P PPA RR R F V
Sbjct: 159 RPCLRFLPQPPLCGLPGALALAVPGPCLSAPPSPPAARRSSLLPERLTGFTSV 211
>gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 31.2 bits (69), Expect = 4.1
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 2 RGCLRLAL---LCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHV 51
R CLR LC LP L A PG +P PPA RR R F V
Sbjct: 159 RPCLRFLPQPPLCGLPGALALAVPGPCLSAPPSPPAARRSSLLPERLTGFTSV 211
>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
Length = 4861
Score = 30.8 bits (68), Expect = 5.4
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 340 IDGSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSS 399
+DG FG GSGN + + T +S S+ + G P S
Sbjct: 3018 VDGWFGGECGSGN---PYYLLCGTCREKYLAMKTKSKSTSSERYK---GQAPDLIGKQDS 3071
Query: 400 VEESDFDTMPDIESDKNIIRTKMF-LYLSDLSRKDRRIV 437
V E D+D M D++ D+ + + F L L DRRIV
Sbjct: 3072 VYEEDWD-MLDVDEDEKLTGEEEFELLAGPLGLNDRRIV 3109
>gi|5032151 TBP-associated factor 11 [Homo sapiens]
Length = 211
Score = 30.4 bits (67), Expect = 7.0
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 15/85 (17%)
Query: 365 EGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIE---SDKNIIRTK 421
+G G DE+++ P G PG +DTD EE+D D D++ +++ + ++
Sbjct: 11 KGGETGESDETAAVP---------GDPGATDTDGIPEETDGDADVDLKEAAAEEGELESQ 61
Query: 422 MFLYLSDLSRKDRRIV---SKKYKI 443
L+ + R+D ++ +KK KI
Sbjct: 62 DVSDLTTVEREDSSLLNPAAKKLKI 86
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 30.4 bits (67), Expect = 7.0
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 339 SIDGSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDS 398
S S S+ S + +S ++S+ S+ + SSSS SSS +D DS
Sbjct: 2618 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDS 2677
Query: 399 SVEESD 404
S D
Sbjct: 2678 SCSSDD 2683
Score = 30.0 bits (66), Expect = 9.2
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 342 GSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVE 401
G+ G N + + A+ P ++S+ S+ + SSSS SSS S + SS
Sbjct: 2596 GTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2655
Query: 402 ES 403
S
Sbjct: 2656 SS 2657
>gi|62865866 homeobox B13 [Homo sapiens]
Length = 284
Score = 30.4 bits (67), Expect = 7.0
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 338 KSIDGSFGSNDGSGNMVA-----SHPIAASTPEGSNYGTID-ESSSSPGRQMSSSDGGPP 391
K I+G G+ G N+VA SHP A + NY +D S+ P +Q G P
Sbjct: 13 KDIEGLLGAGGGR-NLVAHSPLTSHPAAPTLMPAVNYAPLDLPGSAEPPKQCHPCPGVPQ 71
Query: 392 GQS 394
G S
Sbjct: 72 GTS 74
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 355 ASHPIAASTPEGSNYGTIDESSSSPGRQMSSSD----GGPPGQSDTD 397
A HP+A +P +N + + S++S G Q+S ++ G PPG +D D
Sbjct: 31 APHPMAPPSPS-TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQD 76
>gi|51317353 RNA binding motif, single stranded interacting protein
3 isoform 3 [Homo sapiens]
Length = 419
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 355 ASHPIAASTPEGSNYGTIDESSSSPGRQMSSSD----GGPPGQSDTD 397
A HP+A +P +N + + S++S G Q+S ++ G PPG +D D
Sbjct: 30 APHPMAPPSPS-TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQD 75
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 30.4 bits (67), Expect = 7.0
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 355 ASHPIAASTPEGSNYGTIDESSSSPGRQMSSSD----GGPPGQSDTD 397
A HP+A +P +N + + S++S G Q+S ++ G PPG +D D
Sbjct: 31 APHPMAPPSPS-TNSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQD 76
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 30.4 bits (67), Expect = 7.0
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 342 GSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSS 399
GS S GSG+ + S+ GSN G + SSS G SS GG G S SS
Sbjct: 240 GSSNSGGGSGSQ------SGSSGSGSN-GDNNNGSSSGGSSSGSSSGGSSGGSSGGSS 290
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 30.4 bits (67), Expect = 7.0
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 342 GSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSS 399
GS S GSG+ + S+ GSN G + SSS G SS GG G S SS
Sbjct: 240 GSSNSGGGSGSQ------SGSSGSGSN-GDNNNGSSSGGSSSGSSSGGSSGGSSGGSS 290
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 30.4 bits (67), Expect = 7.0
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 342 GSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSS 399
GS S GSG+ + S+ GSN G + SSS G SS GG G S SS
Sbjct: 240 GSSNSGGGSGSQ------SGSSGSGSN-GDNNNGSSSGGSSSGSSSGGSSGGSSGGSS 290
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 30.4 bits (67), Expect = 7.0
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 342 GSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSS 399
GS S GSG+ + S+ GSN G + SSS G SS GG G S SS
Sbjct: 240 GSSNSGGGSGSQ------SGSSGSGSN-GDNNNGSSSGGSSSGSSSGGSSGGSSGGSS 290
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 30.0 bits (66), Expect = 9.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 4 CLRLA---LLCALPW--LLLAASPGHPAKSPRQPPAPRRDPFDAAR 44
C RLA + PW L L SP PA P P AP R P A +
Sbjct: 82 CRRLASYSFWSSAPWRELTLPVSPADPAAPPSSPHAPTRPPPQAVQ 127
>gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo
sapiens]
Length = 336
Score = 30.0 bits (66), Expect = 9.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 4 CLRLA---LLCALPW--LLLAASPGHPAKSPRQPPAPRRDPFDAAR 44
C RLA + PW L L SP PA P P AP R P A +
Sbjct: 82 CRRLASYSFWSSAPWRELTLPVSPADPAAPPSSPHAPTRPPPQAVQ 127
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 30.0 bits (66), Expect = 9.2
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 4 CLRLA---LLCALPW--LLLAASPGHPAKSPRQPPAPRRDPFDAAR 44
C RLA + PW L L SP PA P P AP R P A +
Sbjct: 82 CRRLASYSFWSSAPWRELTLPVSPADPAAPPSSPHAPTRPPPQAVQ 127
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 30.0 bits (66), Expect = 9.2
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 343 SFGSNDGSGNMVASHPIAASTPEGSNYGTIDE--SSSSPGRQMSSSDGGP--PGQSDTDS 398
S S + G +SH ++ + S+ + S+SS SSS GGP P S S
Sbjct: 292 SESSRESKGKKSSSHSLSHKGKKLSSGKGVSSFTSASSSSSSSSSSSGGPFQPAVSSLQS 351
Query: 399 SVEESDFDTMPDIESDK 415
S + S F + E DK
Sbjct: 352 SPDFSAFPKLEQPEEDK 368
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 30.0 bits (66), Expect = 9.2
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 3/124 (2%)
Query: 294 EVTIVPSIKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQR-KSIDGSFGSNDGSGN 352
E P + Y ++LF + LG V V R R + D G + N
Sbjct: 2795 EARPAPGLGPGAYNNTALFEESGLIRITLGASTVSSVSSARSGRTQDQDSQRGRSYLRDN 2854
Query: 353 MVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIE 412
++ H AA + S + M D G SD+D S+EE ++P E
Sbjct: 2855 VLVRHGSAADHTDHSLQAHAGPTDLDVA--MFHRDAGADSDSDSDLSLEEERSLSIPSSE 2912
Query: 413 SDKN 416
S+ N
Sbjct: 2913 SEDN 2916
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,049,142
Number of Sequences: 37866
Number of extensions: 1309872
Number of successful extensions: 6376
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6262
Number of HSP's gapped (non-prelim): 106
length of query: 827
length of database: 18,247,518
effective HSP length: 111
effective length of query: 716
effective length of database: 14,044,392
effective search space: 10055784672
effective search space used: 10055784672
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.