Guide to the Human Genome
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Name: SIDT1 Sequence: fasta or formatted (827aa) NCBI GI: 116812584
Description:

SID1 transmembrane family, member 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         55           3
 C cysteine            2.1         17           1
 D aspartate           5.2         43           3
 E glutamate           3.3         27           2
 F phenylalanine       7.4         61           3
 G glycine             4.8         40           2
 H histidine           1.9         16           1
 I isoleucine          5.9         49           2
 K lysine              4.0         33           2
 L leucine            10.6         88           3
 M methionine          2.8         23           2
 N asparagine          4.2         35           2
 P proline             4.7         39           2
 Q glutamine           4.2         35           2
 R arginine            4.4         36           2
 S serine              8.6         71           4
 T threonine           3.7         31           1
 V valine              9.1         75           3
 W tryptophan          1.2         10           1
 Y tyrosine            5.2         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SID1 transmembrane family, member 1 
SIDT2                 0.562   SID1 transmembrane family, member 2 
ZCCHC10               0.007   zinc finger, CCHC domain containing 10 
DACH1                 0.005   dachshund homolog 1 isoform b 
DACH1                 0.005   dachshund homolog 1 isoform a 
DACH1                 0.005   dachshund homolog 1 isoform c 
AEBP2                 0.005   AE binding protein 2 isoform b 
AEBP2                 0.005   AE binding protein 2 isoform a 
EPN1                  0.004   epsin 1 isoform b 
EPN1                  0.004   epsin 1 isoform a 
CD6                   0.004   CD6 molecule 
LOC284801             0.004   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.004   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.004   PREDICTED: hypothetical protein LOC284801 
HERC1                 0.004   guanine nucleotide exchange factor p532 
TAF11                 0.003   TBP-associated factor 11 
TNRC18                0.003   trinucleotide repeat containing 18 
HOXB13                0.003   homeobox B13 
RBMS3                 0.003   RNA binding motif, single stranded interacting prote...
RBMS3                 0.003   RNA binding motif, single stranded interacting prote...
RBMS3                 0.003   RNA binding motif, single stranded interacting prote...
DMKN                  0.003   dermokine isoform 4 precursor 
DMKN                  0.003   dermokine isoform 5 precursor 
DMKN                  0.003   dermokine isoform 3 precursor 
DMKN                  0.003   dermokine isoform 2 precursor 
LOC100292723          0.003   PREDICTED: hypothetical protein 
LOC100290128          0.003   PREDICTED: hypothetical protein XP_002346712 
LOC100288963          0.003   PREDICTED: hypothetical protein XP_002342546 
MLLT6                 0.003   myeloid/lymphoid or mixed-lineage leukemia (trithora...
CELSR3                0.003   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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