Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239746769
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746769 PREDICTED: similar to Serine/threonine-protein
kinase PRKX (Protein kinase PKX1) [Homo sapiens]
(330 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746769 PREDICTED: similar to Serine/threonine-protein kina... 676 0.0
gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens] 618 e-177
gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens] 609 e-175
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens] 493 e-140
gi|153251840 zinc finger protein 839 [Homo sapiens] 142 5e-34
gi|4826948 protein kinase, X-linked [Homo sapiens] 73 4e-13
gi|19111150 angiomotin isoform 2 [Homo sapiens] 53 4e-07
gi|166064029 angiomotin isoform 1 [Homo sapiens] 53 4e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 47 3e-05
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 47 3e-05
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 46 5e-05
gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 45 7e-05
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 45 7e-05
gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 45 7e-05
gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ... 45 7e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 45 7e-05
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 45 1e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 2e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 44 2e-04
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 44 2e-04
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 44 3e-04
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 44 3e-04
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 44 3e-04
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 44 3e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 3e-04
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 44 3e-04
gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 44 3e-04
gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens] 43 3e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 43 3e-04
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 43 3e-04
>gi|239746769 PREDICTED: similar to Serine/threonine-protein kinase
PRKX (Protein kinase PKX1) [Homo sapiens]
Length = 330
Score = 676 bits (1743), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MVHPNASACSGFLQTSDNLGTIKAKHSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRA 60
MVHPNASACSGFLQTSDNLGTIKAKHSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRA
Sbjct: 1 MVHPNASACSGFLQTSDNLGTIKAKHSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRA 60
Query: 61 AGGRGRETGNAQGPRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPL 120
AGGRGRETGNAQGPRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPL
Sbjct: 61 AGGRGRETGNAQGPRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPL 120
Query: 121 SPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLP 180
SPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLP
Sbjct: 121 SPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLP 180
Query: 181 ERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPANRLQDFDTLV 240
ERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPANRLQDFDTLV
Sbjct: 181 ERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPANRLQDFDTLV 240
Query: 241 TVGKQLEAICVKVTSGETKGQEWPTSLLATVQPQSARQSQPPRGNSRLVGLHVTSPQLLR 300
TVGKQLEAICVKVTSGETKGQEWPTSLLATVQPQSARQSQPPRGNSRLVGLHVTSPQLLR
Sbjct: 241 TVGKQLEAICVKVTSGETKGQEWPTSLLATVQPQSARQSQPPRGNSRLVGLHVTSPQLLR 300
Query: 301 VQPLVRTEPQSCFLHQPPAQGFVQRPLPAL 330
VQPLVRTEPQSCFLHQPPAQGFVQRPLPAL
Sbjct: 301 VQPLVRTEPQSCFLHQPPAQGFVQRPLPAL 330
>gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 618 bits (1593), Expect = e-177
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 30 GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA 89
GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA
Sbjct: 17 GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA 76
Query: 90 ASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAG 149
ASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAG
Sbjct: 77 ASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAG 136
Query: 150 WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEE 209
WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEE
Sbjct: 137 WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEE 196
Query: 210 TPDWAPELCPSSEARSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQEWPTSLLA 269
TPDWAPELCPSSEARSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQEWPTSLLA
Sbjct: 197 TPDWAPELCPSSEARSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQEWPTSLLA 256
Query: 270 TVQPQSARQSQPPRGNSRLVGLHVTSPQLLRVQPLVRTEPQSCFLHQPPAQGFVQRPLPA 329
TVQPQSARQSQPPRGNSRLVGLHVTSPQLLRVQPLVRTEPQSCFLHQPPAQGFVQRPLPA
Sbjct: 257 TVQPQSARQSQPPRGNSRLVGLHVTSPQLLRVQPLVRTEPQSCFLHQPPAQGFVQRPLPA 316
Query: 330 L 330
L
Sbjct: 317 L 317
>gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 609 bits (1571), Expect = e-175
Identities = 298/301 (99%), Positives = 299/301 (99%)
Query: 30 GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA 89
GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA
Sbjct: 17 GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA 76
Query: 90 ASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAG 149
ASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAG
Sbjct: 77 ASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAG 136
Query: 150 WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEE 209
WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEE
Sbjct: 137 WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEE 196
Query: 210 TPDWAPELCPSSEARSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQEWPTSLLA 269
TPDWAPELCPS E+RSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQE PTSLLA
Sbjct: 197 TPDWAPELCPSPESRSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQERPTSLLA 256
Query: 270 TVQPQSARQSQPPRGNSRLVGLHVTSPQLLRVQPLVRTEPQSCFLHQPPAQGFVQRPLPA 329
TVQPQSARQSQPPRGNSRLVGLHVTSPQLLRVQPLVRTEPQSCFLHQPPAQGFVQRPLPA
Sbjct: 257 TVQPQSARQSQPPRGNSRLVGLHVTSPQLLRVQPLVRTEPQSCFLHQPPAQGFVQRPLPA 316
Query: 330 L 330
L
Sbjct: 317 L 317
>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 264
Score = 493 bits (1269), Expect = e-140
Identities = 241/242 (99%), Positives = 241/242 (99%)
Query: 30 GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA 89
GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA
Sbjct: 23 GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA 82
Query: 90 ASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAG 149
ASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAG
Sbjct: 83 ASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAG 142
Query: 150 WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEE 209
WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEE
Sbjct: 143 WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEE 202
Query: 210 TPDWAPELCPSSEARSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQEWPTSLLA 269
TPDWAPELCPSSEARSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQE PTSLLA
Sbjct: 203 TPDWAPELCPSSEARSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQERPTSLLA 262
Query: 270 TV 271
TV
Sbjct: 263 TV 264
>gi|153251840 zinc finger protein 839 [Homo sapiens]
Length = 927
Score = 142 bits (357), Expect = 5e-34
Identities = 73/90 (81%), Positives = 78/90 (86%), Gaps = 3/90 (3%)
Query: 244 KQLEAICVKVTSGETKGQEWPTSLLATVQPQSARQSQPPRGNSRLVGLHVTSPQLLRVQP 303
+QLEAICVKVTSGETKGQE P L T+QPQ+AR+SQ PRGNS LVGLH+ SPQLLRVQP
Sbjct: 96 QQLEAICVKVTSGETKGQERPMLLPTTIQPQTARKSQLPRGNSCLVGLHIASPQLLRVQP 155
Query: 304 LVRTEPQSCFLH---QPPAQGFVQRPLPAL 330
LVRTEPQSCFL QPPAQGFVQRPLPAL
Sbjct: 156 LVRTEPQSCFLSDLCQPPAQGFVQRPLPAL 185
>gi|4826948 protein kinase, X-linked [Homo sapiens]
Length = 358
Score = 72.8 bits (177), Expect = 4e-13
Identities = 39/56 (69%), Positives = 40/56 (71%), Gaps = 8/56 (14%)
Query: 196 MKAPGLAQAA--------VAEETPDWAPELCPSSEARSPEPPANRLQDFDTLVTVG 243
M+APGLAQAA VAEETPD AP LCPS EA SPEPP LQDFDTL TVG
Sbjct: 1 MEAPGLAQAAAAESDSRKVAEETPDGAPALCPSPEALSPEPPVYSLQDFDTLATVG 56
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 52.8 bits (125), Expect = 4e-07
Identities = 61/206 (29%), Positives = 81/206 (39%), Gaps = 18/206 (8%)
Query: 28 LVGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGP---RLALQARAAA 84
L G RA+ P P P P P + G R T +G + A A +
Sbjct: 419 LGGDYRAEYVPSTPSPVP----PSTPLLSAHSKTGSRDCSTQTERGTESNKTAAVAPISV 474
Query: 85 PAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLR 144
PA AA+ + + VAA V+ +P AA AP A A+
Sbjct: 475 PAPVAAAATAAAITATAATITTTMVAAAPVAVAAAAAPA------AAAAPSPATAAATAA 528
Query: 145 AGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQA 204
A Q A AS A AP + AA+A P + PA P P VP+ AP AQA
Sbjct: 529 AVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAP--AAPAPVPAPALVPVPAPAAAQA 586
Query: 205 AVAEET--PDWAPELCPSSEARSPEP 228
+ +T P AP + P + A +P P
Sbjct: 587 SAPAQTQAPTSAPAVAP-TPAPTPTP 611
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 52.8 bits (125), Expect = 4e-07
Identities = 61/206 (29%), Positives = 81/206 (39%), Gaps = 18/206 (8%)
Query: 28 LVGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGP---RLALQARAAA 84
L G RA+ P P P P P + G R T +G + A A +
Sbjct: 828 LGGDYRAEYVPSTPSPVP----PSTPLLSAHSKTGSRDCSTQTERGTESNKTAAVAPISV 883
Query: 85 PAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLR 144
PA AA+ + + VAA V+ +P AA AP A A+
Sbjct: 884 PAPVAAAATAAAITATAATITTTMVAAAPVAVAAAAAPA------AAAAPSPATAAATAA 937
Query: 145 AGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQA 204
A Q A AS A AP + AA+A P + PA P P VP+ AP AQA
Sbjct: 938 AVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAP--AAPAPVPAPALVPVPAPAAAQA 995
Query: 205 AVAEET--PDWAPELCPSSEARSPEP 228
+ +T P AP + P + A +P P
Sbjct: 996 SAPAQTQAPTSAPAVAP-TPAPTPTP 1020
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 46.6 bits (109), Expect = 3e-05
Identities = 62/209 (29%), Positives = 74/209 (35%), Gaps = 20/209 (9%)
Query: 23 KAKHSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARA 82
K LVG ++ A R P RA AAG G + P A A
Sbjct: 20 KVVSDLVGSLESQLAASAAHHHHLAPRTPEVRAA---AAGALGNHVVSGS-PAGAAGAGP 75
Query: 83 AAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSP--PLRQPRPAARA---PEGA 137
AAPA A P P GR PG P P P PAA+ PEG+
Sbjct: 76 AAPAEGAPGAAPEPPPAGRAR--PGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGS 133
Query: 138 LASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMK 197
SC P AA A A P++ A A L R+GP PGP P
Sbjct: 134 AGSCA--------PVPAAAAVAAGPEPAPAGPAKPAGPAA-LAARAGPGPGPGPGPGPGP 184
Query: 198 APGLAQAAVAEETPDWAPELCPSSEARSP 226
PG A +T + + L S A +P
Sbjct: 185 GPGKPAGPGAAQTLNGSAALLNSHHAAAP 213
Score = 45.1 bits (105), Expect = 9e-05
Identities = 77/257 (29%), Positives = 92/257 (35%), Gaps = 61/257 (23%)
Query: 69 GNAQGPRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPR 128
G A P A + AAPA PAA + P P P A A A G P PP P
Sbjct: 245 GAAAPPAPAAPSPPAAPA-PAAPAAAPPPP-------PPAPATLARPPGHPAGPPTAAPA 296
Query: 129 ---PAARAPEGALASCGLRAGWAGWP--------PQAAWRAWGASVDAAAPPS--EAASA 175
PAA G+ + A AG P P AA A V A +P +AA
Sbjct: 297 VPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPP 356
Query: 176 EARLPERSGPARR--------------PGPECVPMKAPGL-------AQAAVAEE----- 209
A+ SGPA P P VP APG A AV +
Sbjct: 357 AAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTP 416
Query: 210 ---TPDWAPELCPSSEA-RSPEPPAN--RLQDFDTLVTVGKQLEAICVKVTSGETKGQEW 263
T L P+ A R P+PP N +Q+F QL V V S +
Sbjct: 417 TATTSGIRATLTPTVLAPRLPQPPQNPTNIQNF--------QLPPGMVLVRSENGQLLMI 468
Query: 264 PTSLLATVQPQSARQSQ 280
P LA +Q Q+ Q Q
Sbjct: 469 PQQALAQMQAQAHAQPQ 485
Score = 37.0 bits (84), Expect = 0.024
Identities = 63/226 (27%), Positives = 76/226 (33%), Gaps = 38/226 (16%)
Query: 34 AKATPPAPRPRPGGFRP----PLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPA 89
A PPA R RPGG P P R AG P + + A PA A
Sbjct: 86 APEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAA 145
Query: 90 ASRRSVPAPRG-RRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRA--- 145
+ PAP G + P A+AA A P P P P A GA + A
Sbjct: 146 VAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALL 205
Query: 146 ---------------GWAGWPPQAAWRAWGASVD------AAAPPSEAASAEARLPERSG 184
G A P A G + AAAPP+ AA + P +
Sbjct: 206 NSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAA 265
Query: 185 PARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPA 230
PA P P P A A +A P P P++ P P A
Sbjct: 266 PAAAPPP-------PPPAPATLAR--PPGHPAGPPTAAPAVPPPAA 302
Score = 34.7 bits (78), Expect = 0.12
Identities = 66/248 (26%), Positives = 75/248 (30%), Gaps = 53/248 (21%)
Query: 34 AKATPPAPRPRPGGFRPPLQRARCYRAAG---------GRGRETGNAQGPRLALQARAAA 84
A A P P P G P A AG G G G GP A +A
Sbjct: 143 AAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSA 202
Query: 85 P-------AFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGA 137
A PA S V L LP A V P P PAA +P A
Sbjct: 203 ALLNSHHAAAPAVSL--VNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAA 260
Query: 138 LASCGLRA----------------GWAGWPPQA-------AWRAWGASVDAAAPPSEAAS 174
A A G PP A A G S AA P+ AA
Sbjct: 261 PAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG 320
Query: 175 AEARLPERSGP-----ARRPG-----PECVPMKAPGLAQAAVAEETPDWAPELC--PSSE 222
A + + GP A PG P+ V AP AQ A A + P+ +
Sbjct: 321 GPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQ 380
Query: 223 ARSPEPPA 230
P P A
Sbjct: 381 GALPSPAA 388
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 46.6 bits (109), Expect = 3e-05
Identities = 64/202 (31%), Positives = 73/202 (36%), Gaps = 29/202 (14%)
Query: 39 PAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPAASRRSVPA- 97
PAPRP PG P RA+ R R T A P A R P
Sbjct: 921 PAPRPAPG----PAPFVPRERASVDRWRRTKGAGPP-------GGAGLADGFHRYYGPIE 969
Query: 98 PRGRRLLLPGAVAACAVSDGQPLSPPLRQP--RP------AARAPEGALASCGLRAGWAG 149
P+G L L A AA + G+PLSPP QP +P R E A G G+
Sbjct: 970 PQGLGLGLGEARAAPRGAAGRPLSPPAAQPPQKPPPSYFAIVRDKEPAEPPAGAFPGFPS 1029
Query: 150 --WPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVA 207
PP AA A G + A E+ A AR P R PE P+ PG A
Sbjct: 1030 PPAPPAAAATAVGPPLCRLAFEDESPPAPARWP-------RSDPESQPLLGPGAGGAGGT 1082
Query: 208 EETPDWAPELCPSSEARSPEPP 229
AP P A P P
Sbjct: 1083 GGAGGGAPAAPPPCRAAPPPCP 1104
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 45.8 bits (107), Expect = 5e-05
Identities = 48/152 (31%), Positives = 58/152 (38%), Gaps = 15/152 (9%)
Query: 73 GPRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAAR 132
GP A Q AAP PA R+ + AP P A + A G P P R PR AA
Sbjct: 3 GPPSAPQGALAAPRSPAVRRKGLQAPSWGSPGRPAAHSPWAC--GPPHWGPQRGPRNAAA 60
Query: 133 APEG-----------ALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAA--SAEARL 179
A G A +C G PP A G + P + SA++R
Sbjct: 61 ARPGPRSRWHKRCAAACGACARPPGHQLQPPGAGAPQPGVACSYLGPRPQRTPCSAQSRP 120
Query: 180 PERSGPARRPGPECVPMKAPGLAQAAVAEETP 211
+GP RR P P APG A A +P
Sbjct: 121 GWCAGPRRRHAPGTEPHVAPGRAPPPRAGASP 152
Score = 28.9 bits (63), Expect = 6.6
Identities = 40/143 (27%), Positives = 46/143 (32%), Gaps = 34/143 (23%)
Query: 30 GGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGN--------AQGPRLALQAR 81
G A A P PR R RC A G R G+ A P +A
Sbjct: 54 GPRNAAAARPGPRSR--------WHKRCAAACGACARPPGHQLQPPGAGAPQPGVACSYL 105
Query: 82 AAAPAFPAASRRSVPA----PRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGA 137
P S +S P PR R PG +P P R P P A A G+
Sbjct: 106 GPRPQRTPCSAQSRPGWCAGPRRRHA--PGT---------EPHVAPGRAPPPRAGASPGS 154
Query: 138 LASCGLRAGWAGWPPQAAWRAWG 160
G + P A WR WG
Sbjct: 155 RLLPGSPSLLL---PAATWRTWG 174
>gi|239753883 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 45.4 bits (106), Expect = 7e-05
Identities = 58/181 (32%), Positives = 69/181 (38%), Gaps = 18/181 (9%)
Query: 57 CYRAAG-GRGRETGNAQGPR---LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAAC 112
CY G RGR+ G+ PR Q A + A AA+ R A R RR LL A
Sbjct: 64 CYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGR---AQRVRRGLLRWRTTAL 120
Query: 113 AVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEA 172
P P LR+PR L + G RA G + R AS+D A +
Sbjct: 121 G-----PARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGP 175
Query: 173 ASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPANR 232
AR R RPG VP PG AA +ET A E SP A R
Sbjct: 176 EDLAARASTRRPRGFRPGLP-VPTAPPGGLAAAAKDETSCAARE-----RGASPRGDAGR 229
Query: 233 L 233
+
Sbjct: 230 V 230
Score = 30.0 bits (66), Expect = 3.0
Identities = 41/139 (29%), Positives = 52/139 (37%), Gaps = 32/139 (23%)
Query: 23 KAKHSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARA 82
+ +H L GG+R PAP PR A G+GRE G +A A
Sbjct: 129 RPRHRLPGGSRRL---PAPGPR--------------APAPGKGRERELRTGAASIDRAPA 171
Query: 83 AAPAFPAASRRSVPAPRGRRLLL------PGAVAACAVSDGQPLSPPLRQPRPAARAPEG 136
A+R S PRG R L PG +AA A + S R+ + R G
Sbjct: 172 RTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDE---TSCAARERGASPRGDAG 228
Query: 137 ------ALASCGLRAGWAG 149
A+ SCG A G
Sbjct: 229 RVGRTRAVPSCGAPAVGTG 247
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 45.4 bits (106), Expect = 7e-05
Identities = 58/185 (31%), Positives = 72/185 (38%), Gaps = 32/185 (17%)
Query: 27 SLVGGARAKATPPAPRPRPGGFRPPLQR-ARCYRAAGGRGRETGNAQGPRLALQARAAAP 85
S G A+A+ A R R G PP + R AA R G A+G ++ A
Sbjct: 81 SAAWGPPARASRAAGR-RAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGAT 139
Query: 86 AFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAA--RAPEGALASCGL 143
A +A RSVPA R LP ++ G S LR+P AA R+P +
Sbjct: 140 AASSAGTRSVPARR-----LPPPCGGTSLGAG---SRALRRPGSAALPRSPSSS------ 185
Query: 144 RAGWAGWPPQAAWR-----AWGASVDAAAPPSEAASAEARLPERSG-PA-------RRPG 190
WA P A R W AAPP+ AAS P +G PA P
Sbjct: 186 -RRWAAMPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPD 244
Query: 191 PECVP 195
P C P
Sbjct: 245 PGCTP 249
Score = 31.2 bits (69), Expect = 1.3
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 23/91 (25%)
Query: 121 SPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLP 180
SPP P +A + E A G +P ++A AWG PP+ A+ A R
Sbjct: 53 SPPTVAPAASAGSQEHPGAG-----GPLCFPARSA--AWG-------PPARASRAAGR-- 96
Query: 181 ERSGPARRPGPECVPMKAPGLAQAAVAEETP 211
R+GPA GP P +APG +AA +P
Sbjct: 97 -RAGPA---GP---PCRAPGRGRAAATRRSP 120
>gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo
sapiens]
Length = 296
Score = 45.4 bits (106), Expect = 7e-05
Identities = 58/181 (32%), Positives = 69/181 (38%), Gaps = 18/181 (9%)
Query: 57 CYRAAG-GRGRETGNAQGPR---LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAAC 112
CY G RGR+ G+ PR Q A + A AA+ R A R RR LL A
Sbjct: 64 CYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGR---AQRVRRGLLRWRTTAL 120
Query: 113 AVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEA 172
P P LR+PR L + G RA G + R AS+D A +
Sbjct: 121 G-----PARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGP 175
Query: 173 ASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPANR 232
AR R RPG VP PG AA +ET A E SP A R
Sbjct: 176 EDLAARASTRRPRGFRPGLP-VPTAPPGGLAAAAKDETSCAARE-----RGASPRGDAGR 229
Query: 233 L 233
+
Sbjct: 230 V 230
Score = 30.0 bits (66), Expect = 3.0
Identities = 41/139 (29%), Positives = 52/139 (37%), Gaps = 32/139 (23%)
Query: 23 KAKHSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARA 82
+ +H L GG+R PAP PR A G+GRE G +A A
Sbjct: 129 RPRHRLPGGSRRL---PAPGPR--------------APAPGKGRERELRTGAASIDRAPA 171
Query: 83 AAPAFPAASRRSVPAPRGRRLLL------PGAVAACAVSDGQPLSPPLRQPRPAARAPEG 136
A+R S PRG R L PG +AA A + S R+ + R G
Sbjct: 172 RTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDE---TSCAARERGASPRGDAG 228
Query: 137 ------ALASCGLRAGWAG 149
A+ SCG A G
Sbjct: 229 RVGRTRAVPSCGAPAVGTG 247
>gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo
sapiens]
Length = 296
Score = 45.4 bits (106), Expect = 7e-05
Identities = 58/181 (32%), Positives = 69/181 (38%), Gaps = 18/181 (9%)
Query: 57 CYRAAG-GRGRETGNAQGPR---LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAAC 112
CY G RGR+ G+ PR Q A + A AA+ R A R RR LL A
Sbjct: 64 CYAVPGVRRGRQAGDLSPPRPGSARTQLVATSAAQAAAAGR---AQRVRRGLLRWRTTAL 120
Query: 113 AVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEA 172
P P LR+PR L + G RA G + R AS+D A +
Sbjct: 121 G-----PARPRLRRPRHRLPGGSRRLPAPGPRAPAPGKGRERELRTGAASIDRAPARTGP 175
Query: 173 ASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPANR 232
AR R RPG VP PG AA +ET A E SP A R
Sbjct: 176 EDLAARASTRRPRGFRPGLP-VPTAPPGGLAAAAKDETSCAARE-----RGASPRGDAGR 229
Query: 233 L 233
+
Sbjct: 230 V 230
Score = 30.0 bits (66), Expect = 3.0
Identities = 41/139 (29%), Positives = 52/139 (37%), Gaps = 32/139 (23%)
Query: 23 KAKHSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARA 82
+ +H L GG+R PAP PR A G+GRE G +A A
Sbjct: 129 RPRHRLPGGSRRL---PAPGPR--------------APAPGKGRERELRTGAASIDRAPA 171
Query: 83 AAPAFPAASRRSVPAPRGRRLLL------PGAVAACAVSDGQPLSPPLRQPRPAARAPEG 136
A+R S PRG R L PG +AA A + S R+ + R G
Sbjct: 172 RTGPEDLAARASTRRPRGFRPGLPVPTAPPGGLAAAAKDE---TSCAARERGASPRGDAG 228
Query: 137 ------ALASCGLRAGWAG 149
A+ SCG A G
Sbjct: 229 RVGRTRAVPSCGAPAVGTG 247
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 45.4 bits (106), Expect = 7e-05
Identities = 65/225 (28%), Positives = 79/225 (35%), Gaps = 41/225 (18%)
Query: 13 LQTSDNLGTIKAKHSLVGGARAKATPPAPRP-RPGGFRPPLQRARCYRAAGGRG----RE 67
L T D+L + KA+ L R P P R L + R +G R
Sbjct: 36 LDTIDSLRSRKARPDLERICRMVRRRHGPEPERTRAELEKLIQQRAVLRVSYKGSISYRN 95
Query: 68 TGNAQGPRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQP 127
Q PR R A P P + R PA AA A P PP P
Sbjct: 96 AARVQPPR-----RGATPPAPPRAPRGAPA-----------AAAAAAPPPTPAPPPPPAP 139
Query: 128 RPAA---RAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSG 184
AA RAP A A+ A + P Q RA A+ AA PP+ AA P +G
Sbjct: 140 VAAAAPARAPRAAAAAA--TAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPP--AG 195
Query: 185 PARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPP 229
P R P P AVA P P P + + +PP
Sbjct: 196 PRRAPPP-------------AVAAREPPLPPPPQPPAPPQQQQPP 227
Score = 44.3 bits (103), Expect = 2e-04
Identities = 45/118 (38%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 120 LSPPLRQPRPAA--RAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPS--EAASA 175
+ PP R P A RAP GA A+ A A PP A A V AAAP AA+A
Sbjct: 99 VQPPRRGATPPAPPRAPRGAPAA----AAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAA 154
Query: 176 EARLPERSGPARRPGPEC---VPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPA 230
A P GPA+ PGP P+ AP A AA P + P + R PPA
Sbjct: 155 AATAPPSPGPAQ-PGPRAQRAAPLAAPPPAPAA--------PPAVAPPAGPRRAPPPA 203
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 44.7 bits (104), Expect = 1e-04
Identities = 70/252 (27%), Positives = 98/252 (38%), Gaps = 37/252 (14%)
Query: 36 ATPPAP---RPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQ-----ARAAAPAF 87
A PP+ P GG PL + A G+ T + + LA+ ++ A A
Sbjct: 503 AGPPSAVKAEPATGGKGDPLSSEKAGLVASGKAAPTASGKAEPLAVGKEDPVSKGKADAG 562
Query: 88 PAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGW 147
P+ SV G+ + PG P+S A PEG + S L G
Sbjct: 563 PSGQGDSVSI--GKVVSTPGKTVPVPSGKVDPVSLG-----KAEAIPEGKVGSLPLEKGS 615
Query: 148 AGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQA-AV 206
+A RA G A P AE +LP + G A APG A A +
Sbjct: 616 PVTTTKADPRASGK-----AQPQSGGKAETKLPGQEGAA-----------APGEAGAVCL 659
Query: 207 AEETPDWAPELCPSSEARSPEPPANRLQDFDTLVTVGKQLEAICVKVTSGETKGQEWPTS 266
+ETP + ++ P S R EP A+ + V++GK A K T + G+ P S
Sbjct: 660 KKETPQASEKVDPGS-CRKAEPLASGKGE---PVSLGKADSAPSRK-TESPSLGKVVPLS 714
Query: 267 LLATVQPQSARQ 278
L T S+RQ
Sbjct: 715 LEKTKPSSSSRQ 726
Score = 32.0 bits (71), Expect = 0.78
Identities = 51/224 (22%), Positives = 68/224 (30%), Gaps = 68/224 (30%)
Query: 34 AKATPPAPRPRPGGFRPPLQRAR-----------------CYRAAGGRGRETGNAQGPRL 76
A A PP PR R + P A C A A G
Sbjct: 781 AAAPPPGPRTRDNFTKAPSWEASAPPPPREDAGTQAGAQACVSVAVSPMSPQDGAGGSAF 840
Query: 77 ALQARAAAPAFP------------AASRRSVPA-PRGRRLLLPGAVAACAVSDGQPLSPP 123
+ QA AP+ P AA RSV P + P A V G L+
Sbjct: 841 SFQAAPRAPSPPSRRDAGLQVSLGAAETRSVATGPMTPQAAAPPAFPEVRVRPGSALAAA 900
Query: 124 LRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVD------------------- 164
+ P PA + + G+ W +GA+++
Sbjct: 901 VAPPEPAEPVRDVSWDEKGM-----------TWEVYGAAMEVEVLGMAIQKHLERQIEEH 949
Query: 165 ----AAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQA 204
A APP A + P RSG R P+ + PGL +A
Sbjct: 950 GRQGAPAPPPAARAG----PGRSGSVRTAPPDGAAKRPPGLFRA 989
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 44.3 bits (103), Expect = 2e-04
Identities = 62/221 (28%), Positives = 79/221 (35%), Gaps = 31/221 (14%)
Query: 33 RAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQ---ARAAAPAFPA 89
R + PPA PG P RA+G +G R++ + AR A P
Sbjct: 99 RGERAPPAKNTSPGPVSSP------GRASGTTRPGPLGQKGLRISAEETVARGKATEAPK 152
Query: 90 ASRRSVPAPRGRRLLLPGAVA--------ACAVSDGQPLSPPLRQPRPAARAPEGALASC 141
S S A R PG + A G P P +PRP P +++S
Sbjct: 153 RSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSA 212
Query: 142 GLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEA---RLPERSGPARRPGPEC----V 194
+ P AA R A P S + S+ A P RSGP+ R P
Sbjct: 213 SEHS--TTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPS 270
Query: 195 PMKAPGLAQAAVAEETP---DWAPELCP--SSEARSPEPPA 230
K GL + TP D AP L P SS +P P A
Sbjct: 271 QPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSA 311
Score = 37.0 bits (84), Expect = 0.024
Identities = 43/162 (26%), Positives = 59/162 (36%), Gaps = 37/162 (22%)
Query: 78 LQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGA 137
LQA + PA P S + P+P+ P A+A + P SPP P P +AP
Sbjct: 405 LQAPPSPPASPPLSPLATPSPQA-----PNALAVHLLQ--APFSPP---PSPPVQAPFSP 454
Query: 138 LASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMK 197
AS PP + +A PPS+A + A P + P+ P P
Sbjct: 455 PAS----------PPVSP---------SATPPSQAPPSLAAPPLQVPPSPPASPPMSPSA 495
Query: 198 AP--------GLAQAAVAEETPDWAPELCPSSEARSPEPPAN 231
P +A+ P P L P PPA+
Sbjct: 496 TPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPAS 537
Score = 34.3 bits (77), Expect = 0.16
Identities = 65/229 (28%), Positives = 81/229 (35%), Gaps = 47/229 (20%)
Query: 36 ATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAA-----APAFPAA 90
ATPP P P PPLQ A+ A A P AL + A AP P+A
Sbjct: 495 ATPPPQAPPPLA-APPLQLAKPPPQA-----PPALATPPLQALPSPPASFPGQAPFSPSA 548
Query: 91 SRR----SVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPR-PAARAPEGALASCGLRA 145
S + P P+ +L A V P SP L+ PR P P+ +++ L
Sbjct: 549 SLPMSPLATPPPQAPPVL---AAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTL 605
Query: 146 GWAGWPPQAAWRAWGASV---DAAAPPSEAASAEARL------PERSGPARRPGPE---- 192
A PP R+ +++ D A S A S L PE G A P P+
Sbjct: 606 ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPE-GGAAASPPPDAELA 664
Query: 193 -CVPMK-----APGLAQAAVAEETPDWAPE--------LCPSSEARSPE 227
C P AP LA W P LC E PE
Sbjct: 665 ACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPE 713
Score = 31.6 bits (70), Expect = 1.0
Identities = 60/225 (26%), Positives = 75/225 (33%), Gaps = 37/225 (16%)
Query: 123 PLRQPRPAARAPEGALASCGLRAGWAGWPPQA--AWRAWGASVDAAAP---PSEAASAEA 177
P PRP AL G AG G P A A GA++ +AP P+ +A +
Sbjct: 29 PPGSPRPPPPVTPAALRVLGA-AGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSS 87
Query: 178 RLPERSGPARRPGPECVPMK--APGLAQAAVAEETPDWAPELCPSSEARSPEPPANRLQD 235
R P PA G P K +PG P +P + P
Sbjct: 88 RNPASRPPASGRGERAPPAKNTSPG----------PVSSPGRASGTTRPGPLGQKGLRIS 137
Query: 236 FDTLVTVGKQLEAICVKVTS-GETKGQEWPTSLLATVQPQSARQSQPPRGNSRLVGLHVT 294
+ V GK EA S G + PT T P AR+S R VGL
Sbjct: 138 AEETVARGKATEAPKRSALSAGARRDTSGPTP--GTPSPAMARRS---RAAGTEVGLPRP 192
Query: 295 SPQLLRVQPLV-------------RTEPQSCFLHQPPAQGFVQRP 326
+P P TEP +P A G +QRP
Sbjct: 193 APSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRP 237
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 44.3 bits (103), Expect = 2e-04
Identities = 62/221 (28%), Positives = 79/221 (35%), Gaps = 31/221 (14%)
Query: 33 RAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQ---ARAAAPAFPA 89
R + PPA PG P RA+G +G R++ + AR A P
Sbjct: 90 RGERAPPAKNTSPGPVSSP------GRASGTTRPGPLGQKGLRISAEETVARGKATEAPK 143
Query: 90 ASRRSVPAPRGRRLLLPGAVA--------ACAVSDGQPLSPPLRQPRPAARAPEGALASC 141
S S A R PG + A G P P +PRP P +++S
Sbjct: 144 RSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSA 203
Query: 142 GLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEA---RLPERSGPARRPGPEC----V 194
+ P AA R A P S + S+ A P RSGP+ R P
Sbjct: 204 SEHS--TTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPS 261
Query: 195 PMKAPGLAQAAVAEETP---DWAPELCP--SSEARSPEPPA 230
K GL + TP D AP L P SS +P P A
Sbjct: 262 QPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSA 302
Score = 37.0 bits (84), Expect = 0.024
Identities = 43/162 (26%), Positives = 59/162 (36%), Gaps = 37/162 (22%)
Query: 78 LQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGA 137
LQA + PA P S + P+P+ P A+A + P SPP P P +AP
Sbjct: 366 LQAPPSPPASPPLSPLATPSPQA-----PNALAVHLLQ--APFSPP---PSPPVQAPFSP 415
Query: 138 LASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMK 197
AS PP + +A PPS+A + A P + P+ P P
Sbjct: 416 PAS----------PPVSP---------SATPPSQAPPSLAAPPLQVPPSPPASPPMSPSA 456
Query: 198 AP--------GLAQAAVAEETPDWAPELCPSSEARSPEPPAN 231
P +A+ P P L P PPA+
Sbjct: 457 TPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPAS 498
Score = 34.3 bits (77), Expect = 0.16
Identities = 65/229 (28%), Positives = 81/229 (35%), Gaps = 47/229 (20%)
Query: 36 ATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAA-----APAFPAA 90
ATPP P P PPLQ A+ A A P AL + A AP P+A
Sbjct: 456 ATPPPQAPPPLA-APPLQLAKPPPQA-----PPALATPPLQALPSPPASFPGQAPFSPSA 509
Query: 91 SRR----SVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPR-PAARAPEGALASCGLRA 145
S + P P+ +L A V P SP L+ PR P P+ +++ L
Sbjct: 510 SLPMSPLATPPPQAPPVL---AAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTL 566
Query: 146 GWAGWPPQAAWRAWGASV---DAAAPPSEAASAEARL------PERSGPARRPGPE---- 192
A PP R+ +++ D A S A S L PE G A P P+
Sbjct: 567 ALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPE-GGAAASPPPDAELA 625
Query: 193 -CVPMK-----APGLAQAAVAEETPDWAPE--------LCPSSEARSPE 227
C P AP LA W P LC E PE
Sbjct: 626 ACHPAAWSRGPAPPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPE 674
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 43.9 bits (102), Expect = 2e-04
Identities = 82/305 (26%), Positives = 112/305 (36%), Gaps = 63/305 (20%)
Query: 60 AAGGRGRETGNAQGPRLALQAR-----AAAPAFPAASRRSVPAPRGRRLLL--PGAVAAC 112
AA A P LA A AAAPA AA+ + PAP + P A A+
Sbjct: 506 AAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPA-PAPAAAPAVAAAPAAAASA 564
Query: 113 AVSDGQPLSPPLRQ---PRPAARAPEGAL----------ASCGLRAGWAGWPPQAAWRAW 159
A S Q S PL Q P PAA+ P + S GL+A P Q A +A
Sbjct: 565 APSHSQKPSVPLIQASRPCPAAQPPTKFIKIAPAIQLRTGSTGLKAINVEGPVQGA-QAL 623
Query: 160 GASVDAAAPPSEAASAEA-----RLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWA 214
G+S P A A A L GP P V +P Q + TP+
Sbjct: 624 GSSFKPVQAPGSGAPAPAGISGSDLQSSGGPLPDARPGAVQASSPAPLQFFL--NTPEGL 681
Query: 215 PELC------PSSEARSPEPPANRLQDFDTL--------VTVGKQLEAICVKVTSGETKG 260
L S+ P+ +++L L G Q A+ + T+G
Sbjct: 682 RPLTLLQVPQGSAVLTGPQQQSHQLVSLQQLQQPTAAHPPQPGPQGSALGL-----STQG 736
Query: 261 QEWPTSLLATVQPQSARQSQPPR---------GNSRLVGLHVTSPQLLRVQ------PLV 305
Q +P L V P AR P+ G++++ V P +LR Q P +
Sbjct: 737 QAFPAQQLLKVNPTRARSGLQPQPQPAVLSLLGSAQVPQQGVQLPSVLRQQQPQPQPPKL 796
Query: 306 RTEPQ 310
+ +PQ
Sbjct: 797 QLQPQ 801
Score = 40.0 bits (92), Expect = 0.003
Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 9/135 (6%)
Query: 96 PAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAA 155
P PR + G +++ Q PL++P AA A A A+ A AA
Sbjct: 461 PPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAA------AAA 514
Query: 156 WRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAP 215
A ++ AAA P+ AA+A L + PA P P P A A AA A + P
Sbjct: 515 AAAPAPALAAAAAPALAAAAAPALAAAAAPA--PAPAAAPAVAAAPAAAASAAPSHSQKP 572
Query: 216 ELCPSSEARSPEPPA 230
+ P +A P P A
Sbjct: 573 SV-PLIQASRPCPAA 586
Score = 34.3 bits (77), Expect = 0.16
Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 11/114 (9%)
Query: 125 RQPRPAARAPEGALASCGLRAGWAGWPPQAA-------WRAWGASVDAAAPPSEAASAEA 177
+ P P + P +S G + +PPQ A + A A AAA + AA+A A
Sbjct: 459 KHPPPRTQLP----SSSGKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAA 514
Query: 178 RLPERSGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPPAN 231
A P AP LA AA P AP + + A + P++
Sbjct: 515 AAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSH 568
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 43.5 bits (101), Expect = 3e-04
Identities = 54/176 (30%), Positives = 65/176 (36%), Gaps = 19/176 (10%)
Query: 72 QGPRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAA 131
+GP + + PA R +V R R LL P VA AV+ PL P
Sbjct: 61 RGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAV-AVAVSPPLEPAAESLDGLE 119
Query: 132 RAPEGALASCGLRAGWAGWPPQAAWRAWGASVDA------AAPPSEAASAEARLPERSGP 185
APE L S + A + PP A A AAP + A A A P P
Sbjct: 120 EAPE-QLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAP---AP 175
Query: 186 ARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEA--------RSPEPPANRL 233
A P P V AP A A P AP+ P A R EP A++L
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQL 231
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 43.5 bits (101), Expect = 3e-04
Identities = 54/176 (30%), Positives = 65/176 (36%), Gaps = 19/176 (10%)
Query: 72 QGPRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAA 131
+GP + + PA R +V R R LL P VA AV+ PL P
Sbjct: 61 RGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAV-AVAVSPPLEPAAESLDGLE 119
Query: 132 RAPEGALASCGLRAGWAGWPPQAAWRAWGASVDA------AAPPSEAASAEARLPERSGP 185
APE L S + A + PP A A AAP + A A A P P
Sbjct: 120 EAPE-QLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAP---AP 175
Query: 186 ARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEA--------RSPEPPANRL 233
A P P V AP A A P AP+ P A R EP A++L
Sbjct: 176 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQL 231
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 43.5 bits (101), Expect = 3e-04
Identities = 54/176 (30%), Positives = 65/176 (36%), Gaps = 19/176 (10%)
Query: 72 QGPRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAA 131
+GP + + PA R +V R R LL P VA AV+ PL P
Sbjct: 72 RGPGRLQWTEVDSDSVPAFYRETVQVGRCRLLLAPRPVAV-AVAVSPPLEPAAESLDGLE 130
Query: 132 RAPEGALASCGLRAGWAGWPPQAAWRAWGASVDA------AAPPSEAASAEARLPERSGP 185
APE L S + A + PP A A AAP + A A A P P
Sbjct: 131 EAPE-QLPSVPVPAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAP---AP 186
Query: 186 ARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEA--------RSPEPPANRL 233
A P P V AP A A P AP+ P A R EP A++L
Sbjct: 187 APAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGANQGQRGQEPLADQL 242
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 43.5 bits (101), Expect = 3e-04
Identities = 44/153 (28%), Positives = 52/153 (33%), Gaps = 28/153 (18%)
Query: 82 AAAPAFPAASRRSVPAPR-------GRRLLLPGAVA---ACAVSDGQPLSPPLRQPRPAA 131
+A PA P S P P G L PG V P SP L +P P A
Sbjct: 3 SAPPASPPGSEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGA 62
Query: 132 RAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARR--- 188
A GA S G G G P +A PP + P+ GP R
Sbjct: 63 AADGGARWSAGPAPGLEGGPRDPG--------PSAPPPRSGPRGQLASPDAPGPGPRSEA 114
Query: 189 PGPECVPMKAPGLAQAAVAEETPDWAPELCPSS 221
P PE P+ + EE + P CP S
Sbjct: 115 PLPELDPL-------FSWTEEPEECGPASCPES 140
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 43.5 bits (101), Expect = 3e-04
Identities = 61/223 (27%), Positives = 79/223 (35%), Gaps = 31/223 (13%)
Query: 33 RAKATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQ---ARAAAPAFPA 89
R + PPA PG P RA+G +G R++ + AR A P
Sbjct: 99 RGERAPPAKNTSPGPVSSP------GRASGTTRPGPLGQKGLRISAEETVARGKATEAPK 152
Query: 90 ASRRSVPAPRGRRLLLPGAVA--------ACAVSDGQPLSPPLRQPRPAARAPEGALASC 141
S S A R PG + A G P P +PRP P +++S
Sbjct: 153 RSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSA 212
Query: 142 GLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEA---RLPERSGPARRPGPEC----V 194
+ P AA R A P S + S+ A P RSGP+ R P
Sbjct: 213 SEHS--TTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPS 270
Query: 195 PMKAPGLAQAAVAEETP---DWAPELCP--SSEARSPEPPANR 232
K GL + TP D AP L P SS +P P +
Sbjct: 271 QPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTK 313
Score = 37.4 bits (85), Expect = 0.019
Identities = 58/201 (28%), Positives = 75/201 (37%), Gaps = 41/201 (20%)
Query: 36 ATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLA----LQARAAAPAFPAAS 91
ATPP P+ P PPLQ + T Q P LQA + PA P S
Sbjct: 588 ATPP-PQAPPALASPPLQGLPSPPLSP---LATPPPQAPPXLALPPLQAPPSPPASPPLS 643
Query: 92 RRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWP 151
+ P+P+ P A+A + P SPP P P +AP AS P
Sbjct: 644 PLATPSPQA-----PNALAVHLLQ--APFSPP---PSPPVQAPFSPPAS----------P 683
Query: 152 PQAAWRAWGASVDAAAPPSEAASAEARLPER---SGPARRP-GPECVPMKAPGLAQAAVA 207
P + +A PPS+A + A P + S PA P P P AA
Sbjct: 684 PVSP---------SATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPP 734
Query: 208 EETPDWAPELCPSSEARSPEP 228
+ P P P S + +P P
Sbjct: 735 LQVPPSPPASPPMSPSATPPP 755
Score = 33.5 bits (75), Expect = 0.27
Identities = 49/191 (25%), Positives = 67/191 (35%), Gaps = 27/191 (14%)
Query: 31 GARAKATPPAP----RPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPA 86
G A+ TP AP +P+P G LQ R + R ++ A GP + + A P+
Sbjct: 256 GPSARGTPRAPAHPSQPKPKG----LQALRPPQVTPPR-KDAAPALGPLSS--SPLATPS 308
Query: 87 FPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAG 146
R VP P LP + P SPPL P P A A S
Sbjct: 309 PSGTKARPVPPPDNAATPLPATL---------PPSPPLATPLPLAPPSPSAPPSLQTLPS 359
Query: 147 WAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQAAV 206
PP A PP +A + +P P P +P LA +++
Sbjct: 360 PPATPPSQ------APPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSP-LALSSL 412
Query: 207 AEETPDWAPEL 217
T +P L
Sbjct: 413 QATTSLGSPTL 423
Score = 33.5 bits (75), Expect = 0.27
Identities = 40/150 (26%), Positives = 49/150 (32%), Gaps = 7/150 (4%)
Query: 78 LQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGA 137
LQ + PA P P G + G A++ G P PP R P P+ A
Sbjct: 840 LQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPP-PPPSRSPSSTLSGPDLA 898
Query: 138 LASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMK 197
G + P + G AAA P A A P + +R P P
Sbjct: 899 ----GHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHP--AAWSRGPAPPLAFRG 952
Query: 198 APGLAQAAVAEETPDWAPELCPSSEARSPE 227
APG P A LC E PE
Sbjct: 953 APGAPLPWPPATGPGSADGLCTIYETEGPE 982
Score = 31.6 bits (70), Expect = 1.0
Identities = 60/225 (26%), Positives = 75/225 (33%), Gaps = 37/225 (16%)
Query: 123 PLRQPRPAARAPEGALASCGLRAGWAGWPPQA--AWRAWGASVDAAAP---PSEAASAEA 177
P PRP AL G AG G P A A GA++ +AP P+ +A +
Sbjct: 29 PPGSPRPPPPVTPAALRVLGA-AGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSS 87
Query: 178 RLPERSGPARRPGPECVPMK--APGLAQAAVAEETPDWAPELCPSSEARSPEPPANRLQD 235
R P PA G P K +PG P +P + P
Sbjct: 88 RNPASRPPASGRGERAPPAKNTSPG----------PVSSPGRASGTTRPGPLGQKGLRIS 137
Query: 236 FDTLVTVGKQLEAICVKVTS-GETKGQEWPTSLLATVQPQSARQSQPPRGNSRLVGLHVT 294
+ V GK EA S G + PT T P AR+S R VGL
Sbjct: 138 AEETVARGKATEAPKRSALSAGARRDTSGPTP--GTPSPAMARRS---RAAGTEVGLPRP 192
Query: 295 SPQLLRVQPLV-------------RTEPQSCFLHQPPAQGFVQRP 326
+P P TEP +P A G +QRP
Sbjct: 193 APSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRP 237
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 43.5 bits (101), Expect = 3e-04
Identities = 51/160 (31%), Positives = 58/160 (36%), Gaps = 33/160 (20%)
Query: 35 KATPPAPRPRPGGFRPPLQRARCYRA---AGGRGRETGNAQGPRLALQARAAAPAFPAAS 91
+ PP P PG PP AR + A G +GP A R A AA+
Sbjct: 42 RPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRADEGAAAA 101
Query: 92 RRSVPAPRGRRLLLPGAVAACAVS-DGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGW 150
R RR LPG+ AA A D L PP P R P AG AG
Sbjct: 102 RPERQRVWARR--LPGSAAAPAPGRDALRLPPPPPPPPERPRLPP---------AGLAGG 150
Query: 151 PPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPG 190
P +APPS A + RS PA RPG
Sbjct: 151 PAD------------SAPPSPAPA------PRSRPAPRPG 172
Score = 36.2 bits (82), Expect = 0.041
Identities = 36/108 (33%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 30 GGARAKATPPAPRPRPGGFRPPLQ----RARCYRAAGGRGRETGNAQGPRLALQARAAAP 85
G RA+ P P GG R P R R A E RL A A AP
Sbjct: 67 GSCRAR----CPSPAAGGLRGPWTAAPGRQRADEGAAAARPERQRVWARRLPGSAAAPAP 122
Query: 86 AFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSP-PLRQPRPAAR 132
A P P R LP A A +D P SP P + RPA R
Sbjct: 123 GRDALRLPPPPPPPPERPRLPPAGLAGGPADSAPPSPAPAPRSRPAPR 170
Score = 32.7 bits (73), Expect = 0.46
Identities = 49/174 (28%), Positives = 60/174 (34%), Gaps = 20/174 (11%)
Query: 65 GRETGNAQG-PRLALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPP 123
GR G A+G P + AP R P PR P + PP
Sbjct: 7 GRRQGRARGRPHSQVSLARRAPLMFGPGLRDPPPPR------PAPPRPGEEPGNRHPPPP 60
Query: 124 LRQPRPAA-RAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLP-E 181
+ P + RA + A+ GLR W P R AAA P RLP
Sbjct: 61 AARTHPGSCRARCPSPAAGGLRGPWTAAPG----RQRADEGAAAARPERQRVWARRLPGS 116
Query: 182 RSGPA------RRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSSEARSPEPP 229
+ PA R P P P + P L A +A D AP P+ RS P
Sbjct: 117 AAAPAPGRDALRLPPPPPPPPERPRLPPAGLAGGPADSAPP-SPAPAPRSRPAP 169
>gi|104876423 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
[Homo sapiens]
Length = 456
Score = 43.5 bits (101), Expect = 3e-04
Identities = 61/219 (27%), Positives = 79/219 (36%), Gaps = 49/219 (22%)
Query: 32 ARAKATPPAPRPRPGGFRPPLQRAR----------------------CYRAAGGRGRETG 69
AR A PP P P P PP A CY GG +G
Sbjct: 2 ARWPAPPPPPPPPPPLAAPPPPGASAKGPPARKLLFMCTLSLSVTYLCYSLLGG----SG 57
Query: 70 NAQGPRLALQARAAA-----PAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPL 124
+ Q P LALQ A P+ P S P G P S G+P PP
Sbjct: 58 SLQFP-LALQESPGAAAEPPPSPPPPSLLPTPVRLGAPSQPPAPPPLDNASHGEPPEPP- 115
Query: 125 RQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSG 184
+PAA +G GL +G G Q AW + PSE +A++ LPER
Sbjct: 116 --EQPAAPGTDG----WGLPSGGGG--AQDAW------LRTPLAPSEMITAQSALPEREA 161
Query: 185 PARRPGPECVPMK--APGLAQAAVAEETPDWAPELCPSS 221
E + + A G ++ A TPD+ + P +
Sbjct: 162 QESSTTDEDLAGRRAANGSSERGGAVSTPDYGEKKLPQA 200
>gi|194097487 RAN binding protein 3 isoform RANBP3-a [Homo sapiens]
Length = 562
Score = 43.1 bits (100), Expect = 3e-04
Identities = 59/194 (30%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 31 GARAKATPPAPRPRPGGFRPPLQRARCYRAAGGRG--------RETGNAQGPRLALQARA 82
GA A PP P P PP R R+AGG RE GN P + + +
Sbjct: 70 GASASTPPP---PAPEAQLPPFPRELAGRSAGGSSPEGGEDSDREDGN-YCPPVKRERTS 125
Query: 83 AAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAAR-----APE-G 136
+ FP + +S G RL P + A S G P P Q R R AP+
Sbjct: 126 SLTQFPPS--QSEERSSGFRLKPPTLIHGQAPSAGLPSQKPKEQQRSVLRPAVLQAPQPK 183
Query: 137 ALASCGLRAGWAG--WPPQAAWRAWGASVDAAA--PPSEAASAEARLPERSGPARRPGPE 192
AL+ +G G P AS D AA PSEAA E + P+++ + E
Sbjct: 184 ALSQTVPSSGTNGVSLPADCTGAVPAASPDTAAWRSPSEAAD-EEKEPQKNESSNASEEE 242
Query: 193 CVPMKAPGLAQAAV 206
K P QA V
Sbjct: 243 ACEKKDPATQQAFV 256
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 43.1 bits (100), Expect = 3e-04
Identities = 57/208 (27%), Positives = 81/208 (38%), Gaps = 26/208 (12%)
Query: 32 ARAKATPPAP-RPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPAA 90
A A TPPA + P P + R RAAGG GR + R + ++ A+AP
Sbjct: 350 AAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRS-RSSASAPRRRGR 408
Query: 91 SRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGW 150
R PRG L A ++ G+ P P P + G G RA
Sbjct: 409 RRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGP--GPEPGSERGHG---GHGKRA--KER 461
Query: 151 PPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGP---ECVPMKAPGLAQAAVA 207
PP+A A+ PS A PE +R PGP ++P +++ A
Sbjct: 462 PPRAR--------PASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSA 513
Query: 208 EETPDWAPELCPSSEARSPEPPANRLQD 235
E+ P S + SP+ P +R +D
Sbjct: 514 EKRPH------SPSRSPSPKKPLSRDKD 535
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 43.1 bits (100), Expect = 3e-04
Identities = 37/122 (30%), Positives = 51/122 (41%), Gaps = 23/122 (18%)
Query: 36 ATPPAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPAASRRSV 95
++P AP P P +P Q A AAGG+ G G + Q AA+PA+ AA +RS
Sbjct: 383 SSPSAPPPPPS--QPQSQAAAAGAAAGGQQAAAGMGLGKDMGAQYAAASPAWAAAQQRSH 440
Query: 96 PAPRGRRLLLPGAVA-ACAVSDGQPLSP--------------PLRQPRPAARAPEGALAS 140
PA + PG S G P+ P P QP+ ++ P G+
Sbjct: 441 PA------MSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQSSPYPGGSYGP 494
Query: 141 CG 142
G
Sbjct: 495 PG 496
Score = 32.0 bits (71), Expect = 0.78
Identities = 39/145 (26%), Positives = 47/145 (32%), Gaps = 24/145 (16%)
Query: 46 GGFRPPLQRARCYRAAGGRGRETGNAQGPRLALQARAAAPAFPAASRRSVPAPRGRRLLL 105
GG L +A AAGG R G Q P A P+ RS
Sbjct: 326 GGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTSPSPMMRSY---------- 375
Query: 106 PGAVAACAVSDGQPLSPPLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDA 165
P +PP P P+ A+ G AG Q A G D
Sbjct: 376 ----GGSYPEYSSPSAPP-----PPPSQPQSQAAAAGAAAGG-----QQAAAGMGLGKDM 421
Query: 166 AAPPSEAASAEARLPERSGPARRPG 190
A + A+ A A +RS PA PG
Sbjct: 422 GAQYAAASPAWAAAQQRSHPAMSPG 446
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,109,722
Number of Sequences: 37866
Number of extensions: 1050100
Number of successful extensions: 8125
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 886
Number of HSP's that attempted gapping in prelim test: 6594
Number of HSP's gapped (non-prelim): 2129
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.