Guide to the Human Genome
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Name: LOC100288287 Sequence: fasta or formatted (45aa) NCBI GI: 239746569
Description:

PREDICTED: hypothetical protein XP_002343781

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          2           1
 C cysteine            8.9          4           1
 D aspartate           2.2          1           1
 E glutamate           2.2          1           1
 F phenylalanine       6.7          3           1
 G glycine            13.3          6           1
 H histidine           2.2          1           1
 I isoleucine          0.0          0           0
 K lysine              4.4          2           2
 L leucine             6.7          3           2
 M methionine          2.2          1           1
 N asparagine          6.7          3           1
 P proline             4.4          2           1
 Q glutamine           0.0          0           0
 R arginine            4.4          2           1
 S serine             11.1          5           1
 T threonine           0.0          0           0
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine           20.0          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343781 
LOC100292523          1.000   PREDICTED: similar to Keratin-associated protein 22...
LOC100291010          1.000   PREDICTED: hypothetical protein XP_002348098 
KRTAP20-2             0.253   keratin associated protein 20-2 
LOC731932             0.205   PREDICTED: hypothetical protein 
LOC731932             0.205   PREDICTED: hypothetical protein 
LOC731932             0.205   PREDICTED: hypothetical protein 
LOC647262             0.145   PREDICTED: hypothetical protein 
KRTAP20-1             0.120   keratin associated protein 20-1 
KRTAP19-8             0.120   keratin associated protein 19-8 
KRTAP6-3              0.120   keratin associated protein 6-3 
KRTAP21-1             0.108   keratin associated protein 21-1 
KRTAP22-1             0.108   keratin associated protein 22-1 
KRTAP19-3             0.096   keratin associated protein 19-3 
KRTAP6-1              0.096   keratin associated protein 6-1 
KRTAP19-7             0.096   keratin associated protein 19-7 
KRTAP6-2              0.084   keratin associated protein 6-2 
KRTAP20-3             0.084   keratin associated protein 20-3 
KRTAP21-2             0.072   keratin associated protein 21-2 
KRTAP19-4             0.060   keratin associated protein 19-4 
KRTAP19-6             0.060   keratin associated protein 19-6 
C21orf66              0.048   GC-rich sequence DNA-binding factor candidate isofor...
C21orf66              0.048   GC-rich sequence DNA-binding factor candidate isofor...
KRTAP19-5             0.048   keratin associated protein 19-5 
FBN1                  0.036   fibrillin 1 precursor 
KRTAP8-1              0.036   keratin associated protein 8-1 
KRTAP19-1             0.036   keratin associated protein 19-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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