Guide to the Human Genome
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Search of human proteins with 239746206

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746206 PREDICTED: hypothetical protein XP_002343662 [Homo
sapiens]
         (83 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757195 PREDICTED: hypothetical protein [Homo sapiens]           174   1e-44
gi|239751702 PREDICTED: hypothetical protein XP_002347969 [Homo ...   174   1e-44
gi|239746206 PREDICTED: hypothetical protein XP_002343662 [Homo ...   174   1e-44
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]         37   0.004
gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo sap...    35   0.010
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]       34   0.022
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho...    34   0.022
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho...    34   0.022
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho...    34   0.022
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho...    34   0.022
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    33   0.049
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    33   0.049
gi|169207410 PREDICTED: hypothetical protein [Homo sapiens]            33   0.049
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      33   0.049
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]            33   0.049
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]            33   0.049
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ...    33   0.064
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ...    33   0.064
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]            33   0.064
gi|51479192 ring finger protein 1 [Homo sapiens]                       33   0.064
gi|239756276 PREDICTED: hypothetical protein [Homo sapiens]            32   0.083
gi|113205091 BAI1-associated protein 2-like 2 [Homo sapiens]           32   0.083
gi|154759255 collagen, type XXVIII precursor [Homo sapiens]            32   0.11 
gi|45387951 transmembrane protein 108 [Homo sapiens]                   32   0.14 
gi|210147493 transmembrane protein 108 [Homo sapiens]                  32   0.14 
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]         31   0.19 
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap...    31   0.24 
gi|23510323 nephroretinin [Homo sapiens]                               31   0.24 
gi|194473700 Src homology 3 domain-containing guanine nucleotide...    31   0.24 
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]               31   0.24 

>gi|239757195 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 83

 Score =  174 bits (442), Expect = 1e-44
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60
          MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS
Sbjct: 1  MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60

Query: 61 VSPGLRGHVGKGGARGCHPGSRL 83
          VSPGLRGHVGKGGARGCHPGSRL
Sbjct: 61 VSPGLRGHVGKGGARGCHPGSRL 83


>gi|239751702 PREDICTED: hypothetical protein XP_002347969 [Homo
          sapiens]
          Length = 83

 Score =  174 bits (442), Expect = 1e-44
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60
          MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS
Sbjct: 1  MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60

Query: 61 VSPGLRGHVGKGGARGCHPGSRL 83
          VSPGLRGHVGKGGARGCHPGSRL
Sbjct: 61 VSPGLRGHVGKGGARGCHPGSRL 83


>gi|239746206 PREDICTED: hypothetical protein XP_002343662 [Homo
          sapiens]
          Length = 83

 Score =  174 bits (442), Expect = 1e-44
 Identities = 83/83 (100%), Positives = 83/83 (100%)

Query: 1  MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60
          MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS
Sbjct: 1  MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60

Query: 61 VSPGLRGHVGKGGARGCHPGSRL 83
          VSPGLRGHVGKGGARGCHPGSRL
Sbjct: 61 VSPGLRGHVGKGGARGCHPGSRL 83


>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
          Length = 1003

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 41  PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKG-GARGCHPGSR 82
           PDP  P L T RG+G   R    GLRG  G+   ARG  PGSR
Sbjct: 841 PDPPVPELLTGRGSGKRGRRGGGGLRGINGEARPARGRKPGSR 883


>gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 209

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 39  RQPDPAAPPLPTPRGTGLGSRSVSPGL--RGHVGKGGARGCHP 79
           R+   AAPP P P GT   S  +SPGL  RG   + GAR  HP
Sbjct: 144 REGQRAAPP-PRPSGTFAASARLSPGLAGRGSPARPGARASHP 185


>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
          Length = 237

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 41  PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
           P P APP   PRG G  +R+  PG R      GARGC   S+L
Sbjct: 107 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 146


>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 41  PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
           P P APP   PRG G  +R+  PG R      GARGC   S+L
Sbjct: 90  PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 129


>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 41  PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
           P P APP   PRG G  +R+  PG R      GARGC   S+L
Sbjct: 98  PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 137


>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 41  PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
           P P APP   PRG G  +R+  PG R      GARGC   S+L
Sbjct: 90  PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 129


>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 41  PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
           P P APP   PRG G  +R+  PG R      GARGC   S+L
Sbjct: 98  PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 137


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 29  PIDAPELRGSR-QPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
           P  A   RG+  QP PA PP P     G G    +PG +G  G  GARG
Sbjct: 337 PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARG 384



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 41  PDPAAPPLPT----PRG----TGLGSRSVSPGLRGHVGKGGARGCHPG 80
           P P  PP P+    P+G    +G   R+  PGL+G  G  G +G  PG
Sbjct: 914 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG-EPG 960



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 32   APELRGSR-QPDPAAPP-LPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
            AP   G R  P P  PP L  P G     R  SPG  G  G+ GA G
Sbjct: 1009 APGASGDRGPPGPVGPPGLTGPAGEP--GREGSPGADGPPGRDGAAG 1053


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 29  PIDAPELRGSR-QPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
           P  A   RG+  QP PA PP P     G G    +PG +G  G  GARG
Sbjct: 268 PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARG 315



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 41  PDPAAPPLPT----PRG----TGLGSRSVSPGLRGHVGKGGARGCHPG 80
           P P  PP P+    P+G    +G   R+  PGL+G  G  G +G  PG
Sbjct: 845 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG-EPG 891



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 4/47 (8%)

Query: 32  APELRGSR-QPDPAAPP-LPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
           AP   G R  P P  PP L  P G     R  SPG  G  G+ GA G
Sbjct: 940 APGASGDRGPPGPVGPPGLTGPAGEP--GREGSPGADGPPGRDGAAG 984


>gi|169207410 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 225

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%)

Query: 29  PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGK-----------GGARGC 77
           P+  PE RG R P      +PT    G+ S + +PG   HVG            GG+RG 
Sbjct: 44  PLPGPERRGPRPPQT----IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99

Query: 78  HP 79
           HP
Sbjct: 100 HP 101


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 10/50 (20%)

Query: 42  DPAAPPLPTPRGTGL----GSRSVSPGLRGHVGKGGARGC-----HPGSR 82
           DP AP LP P G G     G R  SPGL G +G  G RG       PGSR
Sbjct: 453 DPGAPGLPGPPGKGKDGEPGLRG-SPGLPGPLGTKGDRGAPGIPGSPGSR 501



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 26  GVQPIDAPELRGSRQPDPAAPPLPTPRGT-GL----GSRSVSPGLRGHVGKGGARG 76
           G+  I   E +  R   P  P  P   G  GL    G+R   PG +GH G  GA G
Sbjct: 681 GLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARG-PPGFKGHTGDSGAPG 735


>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 330

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%)

Query: 29  PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGK-----------GGARGC 77
           P+  PE RG R P      +PT    G+ S + +PG   HVG            GG+RG 
Sbjct: 44  PLPGPERRGPRPPQT----IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99

Query: 78  HP 79
           HP
Sbjct: 100 HP 101



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)

Query: 33  PELRGS------RQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGA 74
           PE RGS      R   P  PP  +PRG+     + SPG  G  G GGA
Sbjct: 114 PERRGSLQDRLGRASRPGCPP--SPRGSRQERGANSPGRSGARGCGGA 159


>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 330

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%)

Query: 29  PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGK-----------GGARGC 77
           P+  PE RG R P      +PT    G+ S + +PG   HVG            GG+RG 
Sbjct: 44  PLPGPERRGPRPPQT----IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99

Query: 78  HP 79
           HP
Sbjct: 100 HP 101



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%)

Query: 33  PELRGS------RQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGA 74
           PE RGS      R   P  PP  +PRG+     + SPG  G  G GGA
Sbjct: 114 PERRGSLQDRLGRASRPGCPP--SPRGSRQERGANSPGRSGARGCGGA 159


>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
           sapiens]
          Length = 528

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 35  LRGSRQPDPAAPPLP-----TPRGT-GLGSRSVSPGLRGHVGKGGARG 76
           LR SR P PA  PLP     TP GT G  S +  P  RG    G ARG
Sbjct: 254 LRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGPDARGAPTPGRARG 301


>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
           sapiens]
          Length = 528

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 35  LRGSRQPDPAAPPLP-----TPRGT-GLGSRSVSPGLRGHVGKGGARG 76
           LR SR P PA  PLP     TP GT G  S +  P  RG    G ARG
Sbjct: 254 LRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGPDARGAPTPGRARG 301


>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 528

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 35  LRGSRQPDPAAPPLP-----TPRGT-GLGSRSVSPGLRGHVGKGGARG 76
           LR SR P PA  PLP     TP GT G  S +  P  RG    G ARG
Sbjct: 254 LRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGPDARGAPTPGRARG 301


>gi|51479192 ring finger protein 1 [Homo sapiens]
          Length = 406

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 31  DAPELRGSRQPDPAAPPLPT-PRGTGLGSRSVSPGLRGHVGKGGARG 76
           D  ++     PD A  P P  PRG G G  SV  G  G  G GG  G
Sbjct: 182 DGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAG 228


>gi|239756276 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 141

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 3   SRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVS 62
           S  AA    W +R    +AC  +G+QP DAP L G         P P P     G+R  +
Sbjct: 67  SSGAARHAPW-LRPAASYACPGLGLQPRDAPRLLG---------PAPLPGQPASGARGTA 116

Query: 63  PGLRGH 68
              R H
Sbjct: 117 QPSRRH 122


>gi|113205091 BAI1-associated protein 2-like 2 [Homo sapiens]
          Length = 529

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 38  SRQPDPAAPPLPTPRGTGLGSRSVSPGLR 66
           SR P PA PPLP+ R + +GS +V+  ++
Sbjct: 461 SRAPSPAPPPLPSSRRSSMGSTAVATDVK 489


>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
          Length = 1125

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 29  PIDAPELRGSRQPDPAAPP-LPTP------RGTGLGSRSVSPGLRGHVGKGGARG 76
           P+ AP L+G   P    P  LP P      RG G       PG+RG  G  G RG
Sbjct: 628 PVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRG 682


>gi|45387951 transmembrane protein 108 [Homo sapiens]
          Length = 575

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 28  QPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHV-GKGGARGCHPGS 81
           +P  AP    +R+P    PP  + +G G  SR V P   GH   K G RG +P S
Sbjct: 152 RPTTAPPRTTTRRPP--RPPGSSRKGAGNSSRPVPPAPGGHSRSKEGQRGRNPSS 204


>gi|210147493 transmembrane protein 108 [Homo sapiens]
          Length = 575

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 28  QPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHV-GKGGARGCHPGS 81
           +P  AP    +R+P    PP  + +G G  SR V P   GH   K G RG +P S
Sbjct: 152 RPTTAPPRTTTRRPP--RPPGSSRKGAGNSSRPVPPAPGGHSRSKEGQRGRNPSS 204


>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
          Length = 1388

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 38  SRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
           S  P P  PPLP P  T    R ++P  R HVG  G  G
Sbjct: 526 SGSPPPDGPPLPLP--TVAPERWITPAQREHVGMKGQAG 562


>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
           sapiens]
          Length = 1747

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/55 (34%), Positives = 22/55 (40%)

Query: 29  PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83
           P  AP    S  P   +PP P  R       S  PGL   +G G A    PG+ L
Sbjct: 839 PPPAPYYFDSGPPPAFSPPPPPGRAYDTVRSSFKPGLEARLGAGAAGLYEPGAAL 893



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 38  SRQPDPAAPPLPTPRGTGLGSRSVSPG 64
           +R P P APP P PRG      S  PG
Sbjct: 463 ARFPAPPAPPAPPPRGPKRKLYSAVPG 489


>gi|23510323 nephroretinin [Homo sapiens]
          Length = 1426

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%)

Query: 23  VDVGVQPIDAP--ELRGSRQP--DPAAPPLPTPRGTGLGSRS-VSPGL 65
           +D   +P+  P  E R SR+P   P++PP P PR       S V PGL
Sbjct: 455 LDAPTEPVSGPKVERRPSRKPPTSPSSPPAPVPRVLAAPQNSPVGPGL 502


>gi|194473700 Src homology 3 domain-containing guanine nucleotide
           exchange factor [Homo sapiens]
          Length = 871

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 16/68 (23%)

Query: 29  PIDAPELRGSRQPDPAAP-------------PLPTPRGTGLGSRSVSPG---LRGHVGKG 72
           P   P LR  R P+  AP             P+P+P   GL + + SPG     G   K 
Sbjct: 138 PPPPPVLRPPRTPNAPAPCTPEEDLTGLTASPVPSPTANGLAANNDSPGSGSQSGRKAKD 197

Query: 73  GARGCHPG 80
             RG  PG
Sbjct: 198 PERGLFPG 205


>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
          Length = 1714

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 18/51 (35%), Positives = 21/51 (41%)

Query: 26  GVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76
           G  P   P LRGS  P     P   P   GL      PG++G  G+ G  G
Sbjct: 673 GTGPPGFPGLRGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQGTAG 723


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,394,750
Number of Sequences: 37866
Number of extensions: 260282
Number of successful extensions: 2974
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 2550
Number of HSP's gapped (non-prelim): 606
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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