BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239746206 PREDICTED: hypothetical protein XP_002343662 [Homo sapiens] (83 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239757195 PREDICTED: hypothetical protein [Homo sapiens] 174 1e-44 gi|239751702 PREDICTED: hypothetical protein XP_002347969 [Homo ... 174 1e-44 gi|239746206 PREDICTED: hypothetical protein XP_002343662 [Homo ... 174 1e-44 gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 37 0.004 gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo sap... 35 0.010 gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 34 0.022 gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 34 0.022 gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 34 0.022 gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 34 0.022 gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 34 0.022 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 33 0.049 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 33 0.049 gi|169207410 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049 gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 33 0.049 gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049 gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049 gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ... 33 0.064 gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ... 33 0.064 gi|239508959 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064 gi|51479192 ring finger protein 1 [Homo sapiens] 33 0.064 gi|239756276 PREDICTED: hypothetical protein [Homo sapiens] 32 0.083 gi|113205091 BAI1-associated protein 2-like 2 [Homo sapiens] 32 0.083 gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 32 0.11 gi|45387951 transmembrane protein 108 [Homo sapiens] 32 0.14 gi|210147493 transmembrane protein 108 [Homo sapiens] 32 0.14 gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 31 0.19 gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 31 0.24 gi|23510323 nephroretinin [Homo sapiens] 31 0.24 gi|194473700 Src homology 3 domain-containing guanine nucleotide... 31 0.24 gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 31 0.24 >gi|239757195 PREDICTED: hypothetical protein [Homo sapiens] Length = 83 Score = 174 bits (442), Expect = 1e-44 Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS Sbjct: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60 Query: 61 VSPGLRGHVGKGGARGCHPGSRL 83 VSPGLRGHVGKGGARGCHPGSRL Sbjct: 61 VSPGLRGHVGKGGARGCHPGSRL 83 >gi|239751702 PREDICTED: hypothetical protein XP_002347969 [Homo sapiens] Length = 83 Score = 174 bits (442), Expect = 1e-44 Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS Sbjct: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60 Query: 61 VSPGLRGHVGKGGARGCHPGSRL 83 VSPGLRGHVGKGGARGCHPGSRL Sbjct: 61 VSPGLRGHVGKGGARGCHPGSRL 83 >gi|239746206 PREDICTED: hypothetical protein XP_002343662 [Homo sapiens] Length = 83 Score = 174 bits (442), Expect = 1e-44 Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS Sbjct: 1 MFSRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRS 60 Query: 61 VSPGLRGHVGKGGARGCHPGSRL 83 VSPGLRGHVGKGGARGCHPGSRL Sbjct: 61 VSPGLRGHVGKGGARGCHPGSRL 83 >gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] Length = 1003 Score = 36.6 bits (83), Expect = 0.004 Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKG-GARGCHPGSR 82 PDP P L T RG+G R GLRG G+ ARG PGSR Sbjct: 841 PDPPVPELLTGRGSGKRGRRGGGGLRGINGEARPARGRKPGSR 883 >gi|239754991 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 209 Score = 35.4 bits (80), Expect = 0.010 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 3/43 (6%) Query: 39 RQPDPAAPPLPTPRGTGLGSRSVSPGL--RGHVGKGGARGCHP 79 R+ AAPP P P GT S +SPGL RG + GAR HP Sbjct: 144 REGQRAAPP-PRPSGTFAASARLSPGLAGRGSPARPGARASHP 185 >gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] Length = 237 Score = 34.3 bits (77), Expect = 0.022 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83 P P APP PRG G +R+ PG R GARGC S+L Sbjct: 107 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 146 >gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo sapiens] Length = 220 Score = 34.3 bits (77), Expect = 0.022 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83 P P APP PRG G +R+ PG R GARGC S+L Sbjct: 90 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 129 >gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo sapiens] Length = 228 Score = 34.3 bits (77), Expect = 0.022 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83 P P APP PRG G +R+ PG R GARGC S+L Sbjct: 98 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 137 >gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo sapiens] Length = 220 Score = 34.3 bits (77), Expect = 0.022 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83 P P APP PRG G +R+ PG R GARGC S+L Sbjct: 90 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 129 >gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo sapiens] Length = 228 Score = 34.3 bits (77), Expect = 0.022 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Query: 41 PDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83 P P APP PRG G +R+ PG R GARGC S+L Sbjct: 98 PPPPAPPSALPRG-GRAARAGGPGSRARA--AGARGCRLRSQL 137 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 33.1 bits (74), Expect = 0.049 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 29 PIDAPELRGSR-QPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76 P A RG+ QP PA PP P G G +PG +G G GARG Sbjct: 337 PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARG 384 Score = 27.3 bits (59), Expect = 2.7 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 9/48 (18%) Query: 41 PDPAAPPLPT----PRG----TGLGSRSVSPGLRGHVGKGGARGCHPG 80 P P PP P+ P+G +G R+ PGL+G G G +G PG Sbjct: 914 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG-EPG 960 Score = 26.6 bits (57), Expect = 4.6 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 4/47 (8%) Query: 32 APELRGSR-QPDPAAPP-LPTPRGTGLGSRSVSPGLRGHVGKGGARG 76 AP G R P P PP L P G R SPG G G+ GA G Sbjct: 1009 APGASGDRGPPGPVGPPGLTGPAGEP--GREGSPGADGPPGRDGAAG 1053 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 33.1 bits (74), Expect = 0.049 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 29 PIDAPELRGSR-QPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76 P A RG+ QP PA PP P G G +PG +G G GARG Sbjct: 268 PAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPG-APGAKGEAGPTGARG 315 Score = 27.3 bits (59), Expect = 2.7 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 9/48 (18%) Query: 41 PDPAAPPLPT----PRG----TGLGSRSVSPGLRGHVGKGGARGCHPG 80 P P PP P+ P+G +G R+ PGL+G G G +G PG Sbjct: 845 PGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG-EPG 891 Score = 26.6 bits (57), Expect = 4.6 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 4/47 (8%) Query: 32 APELRGSR-QPDPAAPP-LPTPRGTGLGSRSVSPGLRGHVGKGGARG 76 AP G R P P PP L P G R SPG G G+ GA G Sbjct: 940 APGASGDRGPPGPVGPPGLTGPAGEP--GREGSPGADGPPGRDGAAG 984 >gi|169207410 PREDICTED: hypothetical protein [Homo sapiens] Length = 225 Score = 33.1 bits (74), Expect = 0.049 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%) Query: 29 PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGK-----------GGARGC 77 P+ PE RG R P +PT G+ S + +PG HVG GG+RG Sbjct: 44 PLPGPERRGPRPPQT----IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99 Query: 78 HP 79 HP Sbjct: 100 HP 101 >gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] Length = 1073 Score = 33.1 bits (74), Expect = 0.049 Identities = 24/50 (48%), Positives = 25/50 (50%), Gaps = 10/50 (20%) Query: 42 DPAAPPLPTPRGTGL----GSRSVSPGLRGHVGKGGARGC-----HPGSR 82 DP AP LP P G G G R SPGL G +G G RG PGSR Sbjct: 453 DPGAPGLPGPPGKGKDGEPGLRG-SPGLPGPLGTKGDRGAPGIPGSPGSR 501 Score = 25.8 bits (55), Expect = 7.8 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 26 GVQPIDAPELRGSRQPDPAAPPLPTPRGT-GL----GSRSVSPGLRGHVGKGGARG 76 G+ I E + R P P P G GL G+R PG +GH G GA G Sbjct: 681 GLPGIPGEEGKEGRDGKPGPPGEPGKAGEPGLPGPEGARG-PPGFKGHTGDSGAPG 735 >gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] Length = 330 Score = 33.1 bits (74), Expect = 0.049 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%) Query: 29 PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGK-----------GGARGC 77 P+ PE RG R P +PT G+ S + +PG HVG GG+RG Sbjct: 44 PLPGPERRGPRPPQT----IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99 Query: 78 HP 79 HP Sbjct: 100 HP 101 Score = 27.7 bits (60), Expect = 2.0 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%) Query: 33 PELRGS------RQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGA 74 PE RGS R P PP +PRG+ + SPG G G GGA Sbjct: 114 PERRGSLQDRLGRASRPGCPP--SPRGSRQERGANSPGRSGARGCGGA 159 >gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] Length = 330 Score = 33.1 bits (74), Expect = 0.049 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 15/62 (24%) Query: 29 PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGK-----------GGARGC 77 P+ PE RG R P +PT G+ S + +PG HVG GG+RG Sbjct: 44 PLPGPERRGPRPPQT----IPTLFLAGVFSETEAPGSSTHVGAGNSSDPATSRLGGSRGP 99 Query: 78 HP 79 HP Sbjct: 100 HP 101 Score = 27.7 bits (60), Expect = 2.0 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 8/48 (16%) Query: 33 PELRGS------RQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGA 74 PE RGS R P PP +PRG+ + SPG G G GGA Sbjct: 114 PERRGSLQDRLGRASRPGCPP--SPRGSRQERGANSPGRSGARGCGGA 159 >gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo sapiens] Length = 528 Score = 32.7 bits (73), Expect = 0.064 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Query: 35 LRGSRQPDPAAPPLP-----TPRGT-GLGSRSVSPGLRGHVGKGGARG 76 LR SR P PA PLP TP GT G S + P RG G ARG Sbjct: 254 LRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGPDARGAPTPGRARG 301 >gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo sapiens] Length = 528 Score = 32.7 bits (73), Expect = 0.064 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Query: 35 LRGSRQPDPAAPPLP-----TPRGT-GLGSRSVSPGLRGHVGKGGARG 76 LR SR P PA PLP TP GT G S + P RG G ARG Sbjct: 254 LRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGPDARGAPTPGRARG 301 >gi|239508959 PREDICTED: hypothetical protein [Homo sapiens] Length = 528 Score = 32.7 bits (73), Expect = 0.064 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 6/48 (12%) Query: 35 LRGSRQPDPAAPPLP-----TPRGT-GLGSRSVSPGLRGHVGKGGARG 76 LR SR P PA PLP TP GT G S + P RG G ARG Sbjct: 254 LRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGPDARGAPTPGRARG 301 >gi|51479192 ring finger protein 1 [Homo sapiens] Length = 406 Score = 32.7 bits (73), Expect = 0.064 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 31 DAPELRGSRQPDPAAPPLPT-PRGTGLGSRSVSPGLRGHVGKGGARG 76 D ++ PD A P P PRG G G SV G G G GG G Sbjct: 182 DGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAG 228 >gi|239756276 PREDICTED: hypothetical protein [Homo sapiens] Length = 141 Score = 32.3 bits (72), Expect = 0.083 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 3 SRTAASKVSWAMRLETIFACVDVGVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVS 62 S AA W +R +AC +G+QP DAP L G P P P G+R + Sbjct: 67 SSGAARHAPW-LRPAASYACPGLGLQPRDAPRLLG---------PAPLPGQPASGARGTA 116 Query: 63 PGLRGH 68 R H Sbjct: 117 QPSRRH 122 >gi|113205091 BAI1-associated protein 2-like 2 [Homo sapiens] Length = 529 Score = 32.3 bits (72), Expect = 0.083 Identities = 13/29 (44%), Positives = 20/29 (68%) Query: 38 SRQPDPAAPPLPTPRGTGLGSRSVSPGLR 66 SR P PA PPLP+ R + +GS +V+ ++ Sbjct: 461 SRAPSPAPPPLPSSRRSSMGSTAVATDVK 489 >gi|154759255 collagen, type XXVIII precursor [Homo sapiens] Length = 1125 Score = 32.0 bits (71), Expect = 0.11 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 29 PIDAPELRGSRQPDPAAPP-LPTP------RGTGLGSRSVSPGLRGHVGKGGARG 76 P+ AP L+G P P LP P RG G PG+RG G G RG Sbjct: 628 PVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRG 682 >gi|45387951 transmembrane protein 108 [Homo sapiens] Length = 575 Score = 31.6 bits (70), Expect = 0.14 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 28 QPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHV-GKGGARGCHPGS 81 +P AP +R+P PP + +G G SR V P GH K G RG +P S Sbjct: 152 RPTTAPPRTTTRRPP--RPPGSSRKGAGNSSRPVPPAPGGHSRSKEGQRGRNPSS 204 >gi|210147493 transmembrane protein 108 [Homo sapiens] Length = 575 Score = 31.6 bits (70), Expect = 0.14 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%) Query: 28 QPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHV-GKGGARGCHPGS 81 +P AP +R+P PP + +G G SR V P GH K G RG +P S Sbjct: 152 RPTTAPPRTTTRRPP--RPPGSSRKGAGNSSRPVPPAPGGHSRSKEGQRGRNPSS 204 >gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] Length = 1388 Score = 31.2 bits (69), Expect = 0.19 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Query: 38 SRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76 S P P PPLP P T R ++P R HVG G G Sbjct: 526 SGSPPPDGPPLPLP--TVAPERWITPAQREHVGMKGQAG 562 >gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sapiens] Length = 1747 Score = 30.8 bits (68), Expect = 0.24 Identities = 19/55 (34%), Positives = 22/55 (40%) Query: 29 PIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARGCHPGSRL 83 P AP S P +PP P R S PGL +G G A PG+ L Sbjct: 839 PPPAPYYFDSGPPPAFSPPPPPGRAYDTVRSSFKPGLEARLGAGAAGLYEPGAAL 893 Score = 27.3 bits (59), Expect = 2.7 Identities = 13/27 (48%), Positives = 14/27 (51%) Query: 38 SRQPDPAAPPLPTPRGTGLGSRSVSPG 64 +R P P APP P PRG S PG Sbjct: 463 ARFPAPPAPPAPPPRGPKRKLYSAVPG 489 >gi|23510323 nephroretinin [Homo sapiens] Length = 1426 Score = 30.8 bits (68), Expect = 0.24 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Query: 23 VDVGVQPIDAP--ELRGSRQP--DPAAPPLPTPRGTGLGSRS-VSPGL 65 +D +P+ P E R SR+P P++PP P PR S V PGL Sbjct: 455 LDAPTEPVSGPKVERRPSRKPPTSPSSPPAPVPRVLAAPQNSPVGPGL 502 >gi|194473700 Src homology 3 domain-containing guanine nucleotide exchange factor [Homo sapiens] Length = 871 Score = 30.8 bits (68), Expect = 0.24 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 16/68 (23%) Query: 29 PIDAPELRGSRQPDPAAP-------------PLPTPRGTGLGSRSVSPG---LRGHVGKG 72 P P LR R P+ AP P+P+P GL + + SPG G K Sbjct: 138 PPPPPVLRPPRTPNAPAPCTPEEDLTGLTASPVPSPTANGLAANNDSPGSGSQSGRKAKD 197 Query: 73 GARGCHPG 80 RG PG Sbjct: 198 PERGLFPG 205 >gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] Length = 1714 Score = 30.8 bits (68), Expect = 0.24 Identities = 18/51 (35%), Positives = 21/51 (41%) Query: 26 GVQPIDAPELRGSRQPDPAAPPLPTPRGTGLGSRSVSPGLRGHVGKGGARG 76 G P P LRGS P P P GL PG++G G+ G G Sbjct: 673 GTGPPGFPGLRGSVGPVGPIGPAGIPGPMGLSGNKGLPGIKGDKGEQGTAG 723 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.137 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,394,750 Number of Sequences: 37866 Number of extensions: 260282 Number of successful extensions: 2974 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 152 Number of HSP's that attempted gapping in prelim test: 2550 Number of HSP's gapped (non-prelim): 606 length of query: 83 length of database: 18,247,518 effective HSP length: 55 effective length of query: 28 effective length of database: 16,164,888 effective search space: 452616864 effective search space used: 452616864 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.