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Search of human proteins with 239746077
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746077 PREDICTED: hypothetical protein XP_002343640 [Homo
sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757051 PREDICTED: hypothetical protein [Homo sapiens] 248 8e-67
gi|239751563 PREDICTED: hypothetical protein XP_002347903 [Homo ... 248 8e-67
gi|239746077 PREDICTED: hypothetical protein XP_002343640 [Homo ... 248 8e-67
gi|4503515 eukaryotic translation initiation factor 3, subunit 3... 32 0.087
gi|239741968 PREDICTED: hypothetical protein [Homo sapiens] 32 0.15
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 32 0.15
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 32 0.15
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 31 0.19
gi|51479192 ring finger protein 1 [Homo sapiens] 31 0.19
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 31 0.19
gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens] 31 0.25
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b... 30 0.33
gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1... 30 0.33
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 30 0.43
gi|11761629 fibrinogen, alpha polypeptide isoform alpha prepropr... 30 0.57
gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E preprop... 30 0.57
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 29 0.74
gi|55742730 storkhead box 2 [Homo sapiens] 29 0.74
gi|15721939 metastatic lymph node 51 [Homo sapiens] 29 0.97
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens] 29 0.97
gi|134288906 tripartite motif-containing 67 [Homo sapiens] 29 0.97
gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo s... 28 1.3
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 28 1.3
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 28 1.3
gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo ... 28 1.3
gi|109255251 loricrin [Homo sapiens] 28 1.3
gi|55956899 keratin 9 [Homo sapiens] 28 1.6
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 28 1.6
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 28 1.6
>gi|239757051 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 248 bits (633), Expect = 8e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MSTGTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG 60
MSTGTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG
Sbjct: 1 MSTGTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG 60
Query: 61 AQVGSEGIVLDRLVQHQGQQSRAVCHGCAHIALLLKQLVQLKPTTRTRSKSTSARRSFSQ 120
AQVGSEGIVLDRLVQHQGQQSRAVCHGCAHIALLLKQLVQLKPTTRTRSKSTSARRSFSQ
Sbjct: 61 AQVGSEGIVLDRLVQHQGQQSRAVCHGCAHIALLLKQLVQLKPTTRTRSKSTSARRSFSQ 120
Query: 121 Q 121
Q
Sbjct: 121 Q 121
>gi|239751563 PREDICTED: hypothetical protein XP_002347903 [Homo
sapiens]
Length = 121
Score = 248 bits (633), Expect = 8e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MSTGTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG 60
MSTGTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG
Sbjct: 1 MSTGTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG 60
Query: 61 AQVGSEGIVLDRLVQHQGQQSRAVCHGCAHIALLLKQLVQLKPTTRTRSKSTSARRSFSQ 120
AQVGSEGIVLDRLVQHQGQQSRAVCHGCAHIALLLKQLVQLKPTTRTRSKSTSARRSFSQ
Sbjct: 61 AQVGSEGIVLDRLVQHQGQQSRAVCHGCAHIALLLKQLVQLKPTTRTRSKSTSARRSFSQ 120
Query: 121 Q 121
Q
Sbjct: 121 Q 121
>gi|239746077 PREDICTED: hypothetical protein XP_002343640 [Homo
sapiens]
Length = 121
Score = 248 bits (633), Expect = 8e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MSTGTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG 60
MSTGTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG
Sbjct: 1 MSTGTVPLIKADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG 60
Query: 61 AQVGSEGIVLDRLVQHQGQQSRAVCHGCAHIALLLKQLVQLKPTTRTRSKSTSARRSFSQ 120
AQVGSEGIVLDRLVQHQGQQSRAVCHGCAHIALLLKQLVQLKPTTRTRSKSTSARRSFSQ
Sbjct: 61 AQVGSEGIVLDRLVQHQGQQSRAVCHGCAHIALLLKQLVQLKPTTRTRSKSTSARRSFSQ 120
Query: 121 Q 121
Q
Sbjct: 121 Q 121
>gi|4503515 eukaryotic translation initiation factor 3, subunit 3
gamma, 40kDa [Homo sapiens]
Length = 352
Score = 32.3 bits (72), Expect = 0.087
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 31 GTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGIVLDRLVQHQGQQSR 82
GT + A S A KG G GGS QV +G+V+ ++++H ++ +
Sbjct: 7 GTGSTATSSSSTAGAAGKGKGKGGSGDSAVKQVQIDGLVVLKIIKHYQEEGQ 58
>gi|239741968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 31.6 bits (70), Expect = 0.15
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 12 DGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVG 64
D R T A+ P ++ PG P GC G GG+ G GA G
Sbjct: 196 DTRRTEARAEPSPSRRRRRRCCAPLPGSLPARRPGCGGRRAGGARAGQGAHTG 248
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 31.6 bits (70), Expect = 0.15
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 27 QMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGIVLDRLVQHQGQQSRAVCH 86
Q+ GG D A G + A G+G G S G+G ++G V+ ++ QS A H
Sbjct: 123 QLQGGFDGYARGAQQL--AAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH 180
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 31.6 bits (70), Expect = 0.15
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 27 QMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGIVLDRLVQHQGQQSRAVCH 86
Q+ GG D A G + A G+G G S G+G ++G V+ ++ QS A H
Sbjct: 123 QLQGGFDGYARGAQQL--AAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPH 180
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 11 ADGRSTGGWAQGEPEKQMSGG----TDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSE 66
A G +TGG Q + GG T RAP P+ + SG GS+ G G+ GS
Sbjct: 11 AAGGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSSSSSGSSGSSGGGGS--GSA 68
Query: 67 G 67
G
Sbjct: 69 G 69
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 15 STGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGC---KGSGPGGSAVGTGAQVG 64
STGG G P GG A GG P G G GPGG G G+ G
Sbjct: 5 STGGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGPGGGGPGGGSAGG 57
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 13 GRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTG 60
G G +G+ E S APG +P +G G GGS+VGTG
Sbjct: 172 GEGEPGEGEGDGEDVSSDSAPDSAPGPAP---KRPRGGGAGGSSVGTG 216
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 31.2 bits (69), Expect = 0.19
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 10 KADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGIV 69
KADG G + E + S G+ APG +AG PG + A+ +G
Sbjct: 93 KADGEDAGAESNEEAPGEPSAGSSEEAPGEP---SAGSSEEAPGERSTSASAEAAPDGPA 149
Query: 70 LD 71
L+
Sbjct: 150 LE 151
>gi|18375673 regulator of nonsense transcripts 1 [Homo sapiens]
Length = 1118
Score = 30.8 bits (68), Expect = 0.25
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 32 TDTRAPGGSPIWNAGCKGSGPGGSAVGTG-----AQVGSEGIV 69
+ T+ P G P G GPGG+ G AQVG EGI+
Sbjct: 42 SQTQTPPGGPGGPGGGGAGGPGGAGAGAAAGQLDAQVGPEGIL 84
>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
[Homo sapiens]
Length = 372
Score = 30.4 bits (67), Expect = 0.33
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 13 GRSTGGWAQGEPEKQMSG-GTDTRAPGGSPIWNAGCKGSGPGGSAVGT-GAQVGSEG 67
G S GG G +G G D GG P ++ G +G G GG G G+ G G
Sbjct: 229 GGSRGGGGYGGSGDGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSG 285
>gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1
[Homo sapiens]
Length = 1849
Score = 30.4 bits (67), Expect = 0.33
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 23 EPEKQMSGGTDTRAPG--GSPIWNAGCKGSGPGGSAVGTGAQVGSEG 67
EPE GG + APG G P+ N+ K GP S A G+ G
Sbjct: 1152 EPENHFVGGAEASAPGEAGRPL-NSTSKAQGPESSPAVPSASSGTAG 1197
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 30.0 bits (66), Expect = 0.43
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 11 ADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEG 67
AD R++ G A G K G ++ GG+ + G G G GGS+ G+ G G
Sbjct: 165 ADPRASPG-AGGGGAKAAEGCSNAHLHGGASVPPGGLGGGGGGGSSSGSSGGGGGSG 220
Score = 27.3 bits (59), Expect = 2.8
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 23 EPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGI 68
EP G PGG +AG G G GG V G VGS G+
Sbjct: 66 EPADPEGAGLLLPPPGGGGGGSAGSGGGGGGGVGV-PGLLVGSAGV 110
>gi|11761629 fibrinogen, alpha polypeptide isoform alpha
preproprotein [Homo sapiens]
Length = 644
Score = 29.6 bits (65), Expect = 0.57
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 15 STGGWAQGE----------PEKQMSGGTDTRAPGGSP-----IWNAGCKGSGPGGSAVGT 59
S G W G P +GGT T PG S WN+G G+G G+
Sbjct: 291 SAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPG 350
Query: 60 GAQVGSEG 67
+ GS G
Sbjct: 351 SPRPGSTG 358
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 15 STGGWAQGEPEKQMSGGTDTRAP--GGSPIWNAGCKGSGPGGSAVGTGAQVGSEG 67
STG W G +G + +P G + WN G G G + GS G
Sbjct: 330 STGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTG 384
>gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E
preproprotein [Homo sapiens]
Length = 866
Score = 29.6 bits (65), Expect = 0.57
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 15/68 (22%)
Query: 15 STGGWAQGE----------PEKQMSGGTDTRAPGGSP-----IWNAGCKGSGPGGSAVGT 59
S G W G P +GGT T PG S WN+G G+G G+
Sbjct: 291 SAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPG 350
Query: 60 GAQVGSEG 67
+ GS G
Sbjct: 351 SPRPGSTG 358
Score = 28.5 bits (62), Expect = 1.3
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 15 STGGWAQGEPEKQMSGGTDTRAP--GGSPIWNAGCKGSGPGGSAVGTGAQVGSEG 67
STG W G +G + +P G + WN G G G + GS G
Sbjct: 330 STGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTG 384
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 29.3 bits (64), Expect = 0.74
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 30 GGTDTRAPGGS----------PIWNAGCKGSGPGGSAVGTGAQVGSEGIV 69
GG PGGS P G G GPGGSA G G G + V
Sbjct: 4 GGPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASV 53
Score = 27.3 bits (59), Expect = 2.8
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 8/57 (14%)
Query: 28 MSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGT-----GAQVGSEGIVLDRLVQHQGQ 79
M GG + GG P G G G GG GT G ++G + + +V GQ
Sbjct: 56 MGGGVGASSSGGGP---GGSGGGGSGGPGAGTSFPPPGVKLGRDSGKVTTVVATLGQ 109
Score = 26.6 bits (57), Expect = 4.8
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 13 GRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEG 67
G +GG G + S + GG G SGPGG+ G A VG+ G
Sbjct: 4 GGPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTG-GGKASVGAMG 57
>gi|55742730 storkhead box 2 [Homo sapiens]
Length = 926
Score = 29.3 bits (64), Expect = 0.74
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 32 TDTRAPGGS--PIWNAGCKGSGPGGSAVGTGAQVGSEGIVLDRLVQHQGQQ 80
+D + P S P+ + GPGG +G +EGI RLVQH G +
Sbjct: 639 SDRQVPHSSREPVGHKEESPKGPGGGPAASGGV--AEGIANGRLVQHHGAE 687
>gi|15721939 metastatic lymph node 51 [Homo sapiens]
Length = 703
Score = 28.9 bits (63), Expect = 0.97
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 11 ADGRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAG-CKGSGPGGSAVGTGAQVGSE-GI 68
AD R E E+ + G+D+ GGSP+ G C GS GG + +Q G G
Sbjct: 2 ADRRRQRASQDTEDEESGASGSDS---GGSPLRGGGSCSGSAGGGGSGSLPSQRGGRTGA 58
Query: 69 VLDRLVQHQGQQS 81
+ R V+ G +S
Sbjct: 59 LHLRRVESGGAKS 71
>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
Length = 496
Score = 28.9 bits (63), Expect = 0.97
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 33 DTRAPGGSPI--WNAGCKGSGPGGSAVGTGAQVGSEGIVLDR 72
D + PG P W AG G+GP + GT A+ G + DR
Sbjct: 251 DLQGPGAPPAQAWAAG-PGAGPETAGEGTAAEAGDAPLASDR 291
>gi|134288906 tripartite motif-containing 67 [Homo sapiens]
Length = 783
Score = 28.9 bits (63), Expect = 0.97
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 24 PEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGIVLDRLVQHQGQQSRA 83
P + SG T T G+P GCK PGG+ G GA GS +H+ +
Sbjct: 260 PAEAASGPTGTAQ--GAPSGGGGCK--SPGGA--GAGATGGSTARKFPTCPEHEMENYSM 313
Query: 84 VCHGC 88
C C
Sbjct: 314 YCVSC 318
>gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo
sapiens]
Length = 354
Score = 28.5 bits (62), Expect = 1.3
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 13 GRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGIVLDR 72
G+ +GG++ G E + G D R G G G GG G G Q SE +V
Sbjct: 279 GQESGGFS-GPGENRSMSGPDNRGRGRGGFDRGGMSRGGRGGGRGGMGLQ--SESLVYTS 335
Query: 73 LVQ 75
+++
Sbjct: 336 ILK 338
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 3 TGTVPLIKADGRSTGG----WAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVG 58
T T KA G G W + E + ++ G + G S A +G GGS
Sbjct: 192 TVTTSGAKAGGGKGAGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAGGGGSTAS 251
Query: 59 TGAQVGSEGIVLDRLVQHQGQ 79
T VG+ +L +G+
Sbjct: 252 TSGGVGAGAGARGKLSPRKGK 272
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 18 GWAQGEPEKQMSGGTDTRAPGGSPIWNAGCK---------GSGPGGSAVGTGAQVGSEGI 68
GW Q GG+ SP ++ K GSG G G G EG
Sbjct: 195 GWRGKGVRAQQRGGSGGEGASPSPSSSSAGKTPGTGSRNSGSGVAGGGSGGGGSYWKEGC 254
Query: 69 VLDRLVQHQGQQSRAVCHGCA 89
+ L+Q ++ RA A
Sbjct: 255 LQSELIQFHLKKERAAAAAAA 275
>gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo
sapiens]
Length = 233
Score = 28.5 bits (62), Expect = 1.3
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 13 GRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGI 68
GRSTG WA P+ T A G +P +G+GP G + +GS +
Sbjct: 175 GRSTG-WAASSPK--------THAAGQAPAAARSGRGAGPAREGSGAPSGLGSRAV 221
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 24 PEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGIVLDRLVQHQGQQSRA 83
P+ GG+ GG +GC SG GG + G G GS GI ++ G +
Sbjct: 221 PQPSYGGGSS----GGGGSGGSGCFSSGGGGGSSGCGG--GSSGIGSGCIISGGG----S 270
Query: 84 VCHG 87
VC G
Sbjct: 271 VCGG 274
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 17 GGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAV------GTGAQVGSEG 67
GG++ + Q GG + GGS +GC SG GG +V G+G GS G
Sbjct: 149 GGFSGQAVQCQSYGGVSS---GGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSG 202
Score = 27.7 bits (60), Expect = 2.2
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 17 GGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEGIVLDRLVQH 76
GG + G G+ GG + G G G GGS+VG +G+ + H
Sbjct: 246 GGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGSSVGGSG--SGKGVP----ICH 299
Query: 77 QGQQSRA 83
Q QQ +A
Sbjct: 300 QTQQKQA 306
Score = 26.2 bits (56), Expect = 6.3
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 13 GRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEG 67
G S+GG + G + GGS +GC SG GGS+ G S G
Sbjct: 94 GGSSGGGSGCFSSGGGGSGCFSSGGGGSSGGGSGCFSSGGGGSSGGGSGCFSSGG 148
Score = 25.8 bits (55), Expect = 8.2
Identities = 17/51 (33%), Positives = 19/51 (37%)
Query: 17 GGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEG 67
GG G G GGS +GC SG GGS + GS G
Sbjct: 73 GGGGIGGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSG 123
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/55 (41%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 13 GRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEG 67
G S GG+ G SGG+ GGS G GSG GGS G G GS G
Sbjct: 528 GGSGGGYGGGSGGGH-SGGSGGGHSGGSGGNYGGGSGSG-GGSGGGYGGGSGSRG 580
Score = 27.7 bits (60), Expect = 2.2
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 13 GRSTGGWAQGEPEKQMSGGTDTRAPGGSPIWNAGCKGSGPGGSAVGTGAQVGSEG 67
G S GG + G SGG + GG+ +G G GG G+G++ GS G
Sbjct: 536 GGSGGGHSGG------SGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGG 584
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 14 RSTGGWAQGEPEKQMSGGTDTRAPGGSP 41
RS GGW++ E K+ G APGG+P
Sbjct: 1336 RSAGGWSEAENGKE--GTAKEGAPGGTP 1361
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 14 RSTGGWAQGEPEKQMSGGTDTRAPGGSP 41
RS GGW++ E K+ G APGG+P
Sbjct: 1336 RSAGGWSEAENGKE--GTAKEGAPGGTP 1361
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,434,818
Number of Sequences: 37866
Number of extensions: 295849
Number of successful extensions: 1354
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 1167
Number of HSP's gapped (non-prelim): 244
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.