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Search of human proteins with 239746039
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746039 PREDICTED: hypothetical protein XP_002343635 [Homo
sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757038 PREDICTED: hypothetical protein [Homo sapiens] 307 2e-84
gi|239751528 PREDICTED: hypothetical protein [Homo sapiens] 307 2e-84
gi|239746039 PREDICTED: hypothetical protein XP_002343635 [Homo ... 307 2e-84
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 47 7e-06
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 42 1e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 40 5e-04
gi|146134388 YLP motif containing 1 [Homo sapiens] 40 5e-04
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 40 7e-04
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 40 7e-04
gi|153792110 HEG homolog 1 [Homo sapiens] 40 9e-04
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 39 0.002
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 39 0.002
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 39 0.002
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.002
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 38 0.003
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 38 0.003
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 38 0.003
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 37 0.004
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 37 0.004
gi|188536004 zinc finger protein 469 [Homo sapiens] 37 0.006
gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens] 37 0.006
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 37 0.006
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 37 0.006
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 37 0.007
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 36 0.010
gi|46409372 G protein-coupled receptor 153 [Homo sapiens] 36 0.010
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 36 0.013
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.013
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.013
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.013
>gi|239757038 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 307 bits (786), Expect = 2e-84
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MRHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG 60
MRHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG
Sbjct: 1 MRHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG 60
Query: 61 RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPV 120
RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPV
Sbjct: 61 RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPV 120
Query: 121 RPPHVEEVVVTNSGWHSPRTLEPA 144
RPPHVEEVVVTNSGWHSPRTLEPA
Sbjct: 121 RPPHVEEVVVTNSGWHSPRTLEPA 144
>gi|239751528 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 307 bits (786), Expect = 2e-84
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MRHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG 60
MRHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG
Sbjct: 1 MRHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG 60
Query: 61 RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPV 120
RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPV
Sbjct: 61 RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPV 120
Query: 121 RPPHVEEVVVTNSGWHSPRTLEPA 144
RPPHVEEVVVTNSGWHSPRTLEPA
Sbjct: 121 RPPHVEEVVVTNSGWHSPRTLEPA 144
>gi|239746039 PREDICTED: hypothetical protein XP_002343635 [Homo
sapiens]
Length = 144
Score = 307 bits (786), Expect = 2e-84
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MRHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG 60
MRHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG
Sbjct: 1 MRHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG 60
Query: 61 RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPV 120
RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPV
Sbjct: 61 RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPV 120
Query: 121 RPPHVEEVVVTNSGWHSPRTLEPA 144
RPPHVEEVVVTNSGWHSPRTLEPA
Sbjct: 121 RPPHVEEVVVTNSGWHSPRTLEPA 144
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 46.6 bits (109), Expect = 7e-06
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 29 QRWSSQRPPGSRARLQPCVAAPRPDH--PLRRPGRERPPPTRR---GQTSRAQPGGNPSA 83
Q+ Q PP + QP AP PL+ ++PPP + TS+ Q P
Sbjct: 191 QQQQQQPPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQPPPASQQPPAPTSQLQQAPQPQQ 250
Query: 84 REPASNSR-RGQPRETDLRGHPGSQSSRGGGHDPRLPVRPPHVEEVV 129
+P S+S+ + QP T P + S+ GH P+ PP+ ++V
Sbjct: 251 HQPHSHSQNQNQPSPTQQSSSPPQKPSQSPGHGLPSPLTPPNPLQLV 297
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 42.4 bits (98), Expect = 1e-04
Identities = 45/140 (32%), Positives = 55/140 (39%), Gaps = 38/140 (27%)
Query: 19 ILLLLTPNFLQ--------RWSSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRG 70
++L LTP+F + RWS PGS C AAP P R RPP RR
Sbjct: 200 VVLSLTPSFPEPSALSDPSRWSPVLAPGSL-----CPAAPGAQDPRRGKRAPRPPLRRRR 254
Query: 71 QTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRG-GGHDPRLPVRPPHVEEVV 129
+ +A PA R QPR G P + +SR G P LP P +EE+
Sbjct: 255 LPA--------AASAPAPVPRPSQPRRP---GTPEAVASRAVAGLSPALP--PGGLEEMA 301
Query: 130 -----------VTNSGWHSP 138
GWHSP
Sbjct: 302 QGSGGREGALRTPAGGWHSP 321
Score = 33.5 bits (75), Expect = 0.063
Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 35 RPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQ 94
RPP R RL +AP P + RP + R P T SRA G +P A P Q
Sbjct: 247 RPPLRRRRLPAAASAPAP---VPRPSQPRRPGTPEAVASRAVAGLSP-ALPPGGLEEMAQ 302
Query: 95 ---PRETDLRGHPGSQSSRGGGHDPRLP 119
RE LR + GG H P P
Sbjct: 303 GSGGREGALR------TPAGGWHSPPSP 324
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 40.4 bits (93), Expect = 5e-04
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 37 PGSRARLQPC--VAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQ 94
PGS R+ P AP P PL PG+E PP R S + G A P +G
Sbjct: 911 PGSAGRVGPPGPAGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGD 970
Query: 95 PRETDLRGHPGSQSSRG 111
P E G PG G
Sbjct: 971 PGED---GQPGPDGPPG 984
Score = 32.3 bits (72), Expect = 0.14
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 37 PGSRARL-QPCVAAPRPD-HPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQ 94
PG+R P V P PL PG + P R QPG S+ G+
Sbjct: 569 PGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGK 628
Query: 95 PRETDLRGHPGSQSSRG--GGHDPRLPVRPP 123
P E G PG + + G G P PV PP
Sbjct: 629 PGEAGNAGVPGQRGAPGKDGEVGPSGPVGPP 659
Score = 29.3 bits (64), Expect = 1.2
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 50 PRPDHPLRRPGRERPP--PTRRGQTSR-AQPGGNPSAREPASNSRRGQPRETDLRGHPGS 106
P P P+ G E PP P G+ R PG A P + G P L+GH G
Sbjct: 245 PGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGH 304
Query: 107 QSSRG 111
+ G
Sbjct: 305 KGLEG 309
Score = 29.3 bits (64), Expect = 1.2
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 36 PPGSRARLQPCVAAPRPDHPLRR---PGRERPPPTRRGQTSRAQPGGNPSAR-EPASNSR 91
PPGS V P P+ P PGR+ RG P G P ++ P +
Sbjct: 1036 PPGSNGP----VGEPGPEGPAGNDGTPGRDGAVG-ERGDRGDPGPAGLPGSQGAPGTPGP 1090
Query: 92 RGQPRETDLRGHPGSQSSRG 111
G P + RG PGS+ G
Sbjct: 1091 VGAPGDAGQRGDPGSRGPIG 1110
Score = 28.1 bits (61), Expect = 2.7
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 55 PLRRPGRERPP--PTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRG- 111
P PG + P P G A G+P +R P G P RG PG Q RG
Sbjct: 1075 PAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPI-----GPPGRAGKRGLPGPQGPRGD 1129
Query: 112 -GGHDPR 117
G H R
Sbjct: 1130 KGDHGDR 1136
Score = 27.7 bits (60), Expect = 3.5
Identities = 30/119 (25%), Positives = 38/119 (31%), Gaps = 30/119 (25%)
Query: 37 PGSRARLQPCVAAPRPDHPLRRPGRERPP-----------------PTRRGQTSRAQPGG 79
PG + P A P+ P + G PP P +G T G
Sbjct: 383 PGMKGEAGP-TGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSG 441
Query: 80 NP-SAREPASNSRRGQPRETDLRGHPGSQSSRG-----------GGHDPRLPVRPPHVE 126
P SA P S +G +RG PG G G H + P+ PP E
Sbjct: 442 PPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEE 500
Score = 27.3 bits (59), Expect = 4.5
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 11/81 (13%)
Query: 33 SQRPPGSRARLQP--CVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNS 90
S+ PGSR P V P P +PG + P +PG A P
Sbjct: 829 SRGNPGSRGENGPTGAVGFAGPQGPDGQPGVKGEP---------GEPGQKGDAGSPGPQG 879
Query: 91 RRGQPRETDLRGHPGSQSSRG 111
G P G PG + RG
Sbjct: 880 LAGSPGPHGPNGVPGLKGGRG 900
Score = 26.6 bits (57), Expect = 7.7
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 58 RPGRERPPPTRRGQTSRAQPGGNPSAREPAS-NSRRGQPRETDLRGHPGSQSSRG 111
RPG PP + +G P G P R P + G P + G PG S G
Sbjct: 130 RPGPAGPPGS-QGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPG 183
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 40.4 bits (93), Expect = 5e-04
Identities = 37/106 (34%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 25 PNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPG-RERPPPTRRGQTSRAQPGGNPSA 83
P LQ + GSR R P A + PLRR G RER PP R G R P G S
Sbjct: 1094 PGGLQGSQDRGAAGSRERGPPRRAGSQERGPLRRAGSRERIPPRRAGSRERGPPRGPGSR 1153
Query: 84 REPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPVRPP--HVEE 127
S G+ R R PG + + P R P H EE
Sbjct: 1154 ERGLGRSDFGRDR-GPFRPEPGDGGEKMYPYHRDEPPRAPWNHGEE 1198
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 40.0 bits (92), Expect = 7e-04
Identities = 40/126 (31%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 12 GSATNANILLLLTPNFLQRWSSQR-------PPGSRARLQPCVAAPRPDHPLRRPGRERP 64
G N +L PN Q +Q PPGS RP P PG + P
Sbjct: 1754 GQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFP-GTPGMQGP 1812
Query: 65 P-----PTRRGQ--TSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPR 117
P P +G+ T + P G P P SR G P T RG PG R G R
Sbjct: 1813 PGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRGPPG-PPGRPGNSGIR 1871
Query: 118 LPVRPP 123
P PP
Sbjct: 1872 GPPGPP 1877
Score = 33.9 bits (76), Expect = 0.048
Identities = 27/97 (27%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 37 PGSRARLQPCVAAPRPDHPLRRPGRERP-----------PPTRRGQTSRAQPGGNPSARE 85
P S Q V P P P PG + P PP RG P G P +
Sbjct: 1572 PNSCTCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQG 1631
Query: 86 PASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPVRP 122
P S G+ ++G G G P LP P
Sbjct: 1632 PNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPP 1668
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 40.0 bits (92), Expect = 7e-04
Identities = 40/126 (31%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 12 GSATNANILLLLTPNFLQRWSSQR-------PPGSRARLQPCVAAPRPDHPLRRPGRERP 64
G N +L PN Q +Q PPGS RP P PG + P
Sbjct: 2918 GQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFP-GTPGMQGP 2976
Query: 65 P-----PTRRGQ--TSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPR 117
P P +G+ T + P G P P SR G P T RG PG R G R
Sbjct: 2977 PGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRGPPG-PPGRPGNSGIR 3035
Query: 118 LPVRPP 123
P PP
Sbjct: 3036 GPPGPP 3041
Score = 33.9 bits (76), Expect = 0.048
Identities = 27/97 (27%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 37 PGSRARLQPCVAAPRPDHPLRRPGRERP-----------PPTRRGQTSRAQPGGNPSARE 85
P S Q V P P P PG + P PP RG P G P +
Sbjct: 2736 PNSCTCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQG 2795
Query: 86 PASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPVRP 122
P S G+ ++G G G P LP P
Sbjct: 2796 PNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPP 2832
>gi|153792110 HEG homolog 1 [Homo sapiens]
Length = 1381
Score = 39.7 bits (91), Expect = 9e-04
Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Query: 19 ILLLLTPNFL---QRWSSQRPPGSRAR----LQPCVAAPRPDHPLRRPGRERPPPTRRGQ 71
+LLLL P L ++ PP S AR L P A RRP RE PP R +
Sbjct: 13 LLLLLLPLLLLPPAAPGTRDPPPSPARRALSLAPLAGAGLELQLERRPEREPPPTPPRER 72
Query: 72 TSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPVRPPHVEEVVVT 131
A PG + A EP + ++RG P ++ RGG D P E V
Sbjct: 73 RGPATPGPSYRAPEPGAATQRG----------PSGRAPRGGSADAAWKHWPESNTEAHVE 122
Query: 132 N 132
N
Sbjct: 123 N 123
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.9 bits (89), Expect = 0.002
Identities = 25/78 (32%), Positives = 30/78 (38%)
Query: 45 PCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHP 104
P + +P PL P ERPPP R R+ P P ++ R P L
Sbjct: 346 PPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRS 405
Query: 105 GSQSSRGGGHDPRLPVRP 122
G S R G P P RP
Sbjct: 406 GVDSPRSGPRPPLPPDRP 423
Score = 26.9 bits (58), Expect = 5.9
Identities = 33/129 (25%), Positives = 41/129 (31%), Gaps = 25/129 (19%)
Query: 32 SSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQ--------------- 76
+++ P S R AP P P RPG PP+ G +
Sbjct: 289 NNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPL 348
Query: 77 PGGNPSAREPASNSRRGQPRETDLRGH-----PGSQSSRGGGHDPRLPVRPPHVEEVVVT 131
P S P S R P D G P SR G LP P + +
Sbjct: 349 PSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ-----LPS 403
Query: 132 NSGWHSPRT 140
SG SPR+
Sbjct: 404 RSGVDSPRS 412
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.9 bits (89), Expect = 0.002
Identities = 25/78 (32%), Positives = 30/78 (38%)
Query: 45 PCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHP 104
P + +P PL P ERPPP R R+ P P ++ R P L
Sbjct: 346 PPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRS 405
Query: 105 GSQSSRGGGHDPRLPVRP 122
G S R G P P RP
Sbjct: 406 GVDSPRSGPRPPLPPDRP 423
Score = 26.9 bits (58), Expect = 5.9
Identities = 33/129 (25%), Positives = 41/129 (31%), Gaps = 25/129 (19%)
Query: 32 SSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQ--------------- 76
+++ P S R AP P P RPG PP+ G +
Sbjct: 289 NNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPL 348
Query: 77 PGGNPSAREPASNSRRGQPRETDLRGH-----PGSQSSRGGGHDPRLPVRPPHVEEVVVT 131
P S P S R P D G P SR G LP P + +
Sbjct: 349 PSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ-----LPS 403
Query: 132 NSGWHSPRT 140
SG SPR+
Sbjct: 404 RSGVDSPRS 412
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 38.5 bits (88), Expect = 0.002
Identities = 37/129 (28%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Query: 2 RHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPGR 61
++ G R S A + L FL+R +S R PG R QP P + G+
Sbjct: 1164 KNSSGPWLRADSQRRAALCALNPLPFLRRTASDRQPGGRP--QPPTLDPTSTSYESQLGQ 1221
Query: 62 ERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGH--DPRLP 119
+ +PG +P + E +RR P E + GH G Q GH D P
Sbjct: 1222 NSS--SEESPKKDTEPGSSPCSPELQGGTRRASPPEFCVLGH-GLQPEPRTGHIQDKSQP 1278
Query: 120 VRPPHVEEV 128
P EEV
Sbjct: 1279 EAQPQQEEV 1287
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.5 bits (88), Expect = 0.002
Identities = 34/109 (31%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 29 QRWSSQRPPGSRARLQ---PCVAAPRPDHPLRRPGRERPP-----------PTRRGQTSR 74
+R S R P R R + P R P+RR R R P P RRG++
Sbjct: 601 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRS 660
Query: 75 AQPG--GNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPVR 121
P G +R PA S R + R RG S++ R G R VR
Sbjct: 661 RTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVR 709
Score = 33.5 bits (75), Expect = 0.063
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 33 SQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPT-------RRGQTSRAQPGGNPSARE 85
S+ PP R R P V++P P R R R + RRG++ +P G +R
Sbjct: 1718 SRTPP--RHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSR- 1774
Query: 86 PASNSRRGQPRETDLRGHPGSQSS 109
S SRR + R T R GS S
Sbjct: 1775 --SRSRREKTRTTRRRDRSGSSQS 1796
Score = 33.1 bits (74), Expect = 0.083
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 32 SSQRPPGSRARLQ---PCVAAPRPDHPLRRPGRERPP----------PTRRGQTSRAQPG 78
S R P R R + P R P RR R R P P RR +R+
Sbjct: 573 SRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVR 632
Query: 79 GNPSAREPASNSRRGQPRETDLRGHPGSQS-SRGGGHDPRLPVR 121
+R PA S R + R RG S++ +R G R P R
Sbjct: 633 RRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPAR 676
Score = 32.7 bits (73), Expect = 0.11
Identities = 27/84 (32%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 32 SSQRPPGSRARLQPCVAA----PRPDHPLRRPGRERP-PPTRRGQTSRAQPGGNPSAREP 86
S R P R R + A R P RR GR R P RRG++ P S
Sbjct: 647 SRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRS 706
Query: 87 ASNSRRGQPRETDLRGHPGSQSSR 110
R R RG GS S R
Sbjct: 707 LVRRGRSHSRTPQRRGRSGSSSER 730
Score = 32.3 bits (72), Expect = 0.14
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 11/93 (11%)
Query: 29 QRWSSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPAS 88
QRW R P R R + +P+ RPG R T+R SR+ G +R PA+
Sbjct: 520 QRWGRSRSPQRRGRSR----SPQ------RPGWSRSRNTQRRGRSRSARRGRSHSRSPAT 569
Query: 89 NSRRGQPRETDLRGHPGSQSSRGGGHDPRLPVR 121
R + R RG S++ R P R
Sbjct: 570 RG-RSRSRTPARRGRSRSRTPARRRSRSRTPTR 601
Score = 31.6 bits (70), Expect = 0.24
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 32 SSQRPPGSRARLQPCVAA----PRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPA 87
S R P +R R + A R P RR R R P RR ++ G +R PA
Sbjct: 562 SHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPA 621
Query: 88 SNSRRGQPRE-TDLRGHPGSQSSRGGGHDPRLPVR 121
RR + R R S + R G R P R
Sbjct: 622 --RRRSRTRSPVRRRSRSRSPARRSGRSRSRTPAR 654
Score = 30.0 bits (66), Expect = 0.70
Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 23/109 (21%)
Query: 32 SSQRPPGSRARLQPCVAAPRPDH-----PLRRPGRERPPPTRRGQTSRAQPGGNPSAR-- 84
S + PP SR + ++P P P RR R P TR+ + SR + S
Sbjct: 1658 SPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETR 1717
Query: 85 ----------------EPASNSRRGQPRETDLRGHPGSQSSRGGGHDPR 117
EPA SR + R + + S RG P+
Sbjct: 1718 SRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPK 1766
Score = 28.9 bits (63), Expect = 1.6
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 55 PLRRPGRERPPPT-RRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGG 113
P RR GR R P T +RG++ P +R + RR R G S RG
Sbjct: 477 PSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRS--RSAQRWGRSRSPQRRGRS 534
Query: 114 HDPRLP 119
P+ P
Sbjct: 535 RSPQRP 540
Score = 28.9 bits (63), Expect = 1.6
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 24 TPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPP-TRRGQTSRAQPGGNPS 82
TP +R S R P +R R + R RR R R PP TRR SR P
Sbjct: 1927 TPPVTRRRSRSRTPTTRRR-----SRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRR 1981
Query: 83 AREPASNSRRGQPR 96
+R S R + R
Sbjct: 1982 SRSRTSPVTRRRSR 1995
Score = 28.5 bits (62), Expect = 2.0
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 12/90 (13%)
Query: 24 TPNFLQRWSSQRPP---GSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTS--RAQPG 78
TP ++R S R P R+R + +A +RR R R P T RG+ S R+ P
Sbjct: 2022 TPPAIRRRSRSRTPLLPRKRSRSRSPLA-------IRRRSRSRTPRTARGKRSLTRSPPA 2074
Query: 79 GNPSAREPASNSRRGQPRETDLRGHPGSQS 108
+ +S+ R R H GS++
Sbjct: 2075 IRRRSASGSSSDRSRSATPPATRNHSGSRT 2104
Score = 28.1 bits (61), Expect = 2.7
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 32 SSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSR 91
S R P R + R +R GR R P R S +PG + S + R
Sbjct: 495 SRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRS----RNTQR 550
Query: 92 RGQPRETDL-RGHPGSQSSRGGGHDPRLPVR 121
RG+ R R H S ++RG R P R
Sbjct: 551 RGRSRSARRGRSHSRSPATRGRSRS-RTPAR 580
Score = 26.9 bits (58), Expect = 5.9
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 29 QRWSSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQP--GGNPSAREP 86
+R S+ P SR R + R RR R R P TRR SR P +R P
Sbjct: 1909 RRSRSRASPVSRRR-----SRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTP 1963
Query: 87 ASNSRRGQPRETDL 100
RR + R + +
Sbjct: 1964 PVTRRRSRSRTSPI 1977
Score = 26.6 bits (57), Expect = 7.7
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 37 PGSRAR--LQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQ 94
P RAR QP P+P +R R P ++ + + + G R +S+ RR +
Sbjct: 153 PQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGR---RSESSSPRRER 209
Query: 95 PRETDLRGHPGSQSSRGGGHDPRLP 119
+ + + H S+ H P
Sbjct: 210 KKSSKKKKHRSESESKKRKHRSPTP 234
Score = 26.6 bits (57), Expect = 7.7
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 24 TPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSA 83
+P +R S+ PP +R R + R RR PP TRR SR P +
Sbjct: 1916 SPVSRRRSRSRTPPVTRRRSRSRTPTTR-----RRSRSRTPPVTRRRSRSRTPPVTRRRS 1970
Query: 84 REPASNSRRGQPR 96
R S R + R
Sbjct: 1971 RSRTSPITRRRSR 1983
Score = 26.6 bits (57), Expect = 7.7
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 32 SSQRPPGSRARLQPCVA-------APRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAR 84
SS GS +QP VA P P +R P P +R + S + + S+
Sbjct: 2559 SSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSS 2618
Query: 85 EPASNSRRGQPRETDLRGHPGSQSS 109
+S+S + S SS
Sbjct: 2619 SSSSSSSSSSSSSSSSSSSSSSSSS 2643
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 38.1 bits (87), Expect = 0.003
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 32 SSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSR 91
SS+ PPG + + P +P P PG+ + PP + G +P G P +P
Sbjct: 172 SSRSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN----KPQGPPPPGKPQGPPP 226
Query: 92 RGQPRETDLRGHPGSQSS--RGGGHDPRLPVRPP 123
+G + R PG GG+ P+ P PP
Sbjct: 227 QGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPP 260
Score = 36.2 bits (82), Expect = 0.010
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 33 SQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRR 92
S R P + + P +P P PG+ + PP + G +P G P +P +
Sbjct: 110 SPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN----KPQGPPPPGKPQGPPPQ 165
Query: 93 GQPRETDLRGHPGSQSS--RGGGHDPRLPVRPP 123
G + R PG GG+ P+ P PP
Sbjct: 166 GDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP 198
Score = 36.2 bits (82), Expect = 0.010
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 32 SSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSR 91
S++ PPG + + P +P P PG+ + PP + G +P G P +P
Sbjct: 234 SARSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN----KPQGPPPPGKPQGPPP 288
Query: 92 RGQPRETDLRGHPGSQSS--RGGGHDPRLPVRPP 123
+G + R PG GG+ P+ P PP
Sbjct: 289 QGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP 322
Score = 33.5 bits (75), Expect = 0.063
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 32 SSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSR 91
SS+ PPG + + P +P P PG+ + PP + G +P G P +P
Sbjct: 296 SSRSPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN----KPQGPPPPGKPQGPPP 350
Query: 92 RGQPRETDLRGHPGSQSS--RGGGHDPRLPVRP 122
+G + R PG + G++P+ P P
Sbjct: 351 QGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPP 383
Score = 32.0 bits (71), Expect = 0.18
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 18/91 (19%)
Query: 51 RPDHPLRRPGRERPPPTRRGQTSRAQP------------GGNPSAREPASNSRRGQPRET 98
+P P PG+ + PP + G + P GGN P +G P +
Sbjct: 46 KPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 105
Query: 99 DLRGHPGSQSSR------GGGHDPRLPVRPP 123
D P S + GG+ P+ P PP
Sbjct: 106 DKSRSPRSPPGKPQGPPPQGGNQPQGPPPPP 136
Score = 30.4 bits (67), Expect = 0.54
Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 36 PPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRA-------------QPGGNPS 82
PP + + P +P P PG+ + PP + G SR+ Q G NP
Sbjct: 320 PPPGKPQGPPPQGGNKPQGP-PPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQ 378
Query: 83 AREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPVRPP 123
P + QP+ G GG P RPP
Sbjct: 379 GPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGR----PSRPP 415
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 37.7 bits (86), Expect = 0.003
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 32 SSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPG------GNPSARE 85
S RPP +R++ P V PR P R P ++ PPP TS+ PG G ++
Sbjct: 977 SPARPPAARSQQHPSV--PRRMTPGRAPQQQPPPPV---ATSQHHPGPQSRDAGRSPSQP 1031
Query: 86 PASNSRRGQPRETDL-RGH----PGSQSSRG 111
S ++ G+PR T R H P + SSRG
Sbjct: 1032 RLSLTQAGRPRPTSQGRSHSSSDPYTASSRG 1062
Score = 26.6 bits (57), Expect = 7.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 58 RPGRERPPPTRRGQTSRAQPGGN--PSAREPASNSRRGQPRETD 99
RP R P +R SRA PG + PS R +S S++ E D
Sbjct: 1137 RPSRPGGPQSRARVPSRAAPGKSEPPSKRPLSSKSQQSVSAEDD 1180
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 37.7 bits (86), Expect = 0.003
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 33 SQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRA--QPGGNPSAREP-ASN 89
S +P G R + +P P PG+ + PP + G S+ P G P R P N
Sbjct: 33 SGKPEGRRPQ-----GGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGN 87
Query: 90 SRRGQPRETDLRGHP---GSQSSRGGGHDPRLPVRPP 123
+G P P G S+G P P RPP
Sbjct: 88 QSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPP 124
Score = 32.7 bits (73), Expect = 0.11
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 36 PPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRA--QPGGNPSA-REPASNSRR 92
PP + P + P PG+ PP + G SR+ P G P + N +
Sbjct: 136 PPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQ 195
Query: 93 GQPRETDLRGHPGSQSSRGGGHDPRLPVRPP 123
G P +G P + G +P+ P PP
Sbjct: 196 GPPPPGKPQGPPPA------GGNPQQPQAPP 220
Score = 31.2 bits (69), Expect = 0.31
Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 36 PPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQP------------GGNPSA 83
PP + +P + P PG+ PP + G S+ P GGN S
Sbjct: 73 PPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSH 132
Query: 84 REPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPVRPPHVE 126
R P + +P G S+G P P PP E
Sbjct: 133 RPPPPPGKPERPPP------QGGNQSQGPPPHPGKPEGPPPQE 169
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 37.4 bits (85), Expect = 0.004
Identities = 41/139 (29%), Positives = 52/139 (37%), Gaps = 40/139 (28%)
Query: 3 HQHG-RGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPGR 61
HQ G R TR G+ +A+ + WS PP R R + A + P RRP
Sbjct: 354 HQDGQRRTRDGAGNHAS-------EPARVWS---PPPRRQRPRRLPRASLQEEPKRRPPC 403
Query: 62 ERPP---PTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRL 118
RP P R G A PGG P+ RR P PG ++ RGG
Sbjct: 404 ARPSGAGPAREGPA--AWPGGAPTPPHARPTGRRQDP-------EPGPRAPRGG------ 448
Query: 119 PVRPPHVEEVVVTNSGWHS 137
+SGWH+
Sbjct: 449 -----------PASSGWHA 456
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 37.4 bits (85), Expect = 0.004
Identities = 41/139 (29%), Positives = 52/139 (37%), Gaps = 40/139 (28%)
Query: 3 HQHG-RGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPGR 61
HQ G R TR G+ +A+ + WS PP R R + A + P RRP
Sbjct: 354 HQDGQRRTRDGAGNHAS-------EPARVWS---PPPRRQRPRRLPRASLQEEPKRRPPC 403
Query: 62 ERPP---PTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRL 118
RP P R G A PGG P+ RR P PG ++ RGG
Sbjct: 404 ARPSGAGPAREGPA--AWPGGAPTPPHARPTGRRQDP-------EPGPRAPRGG------ 448
Query: 119 PVRPPHVEEVVVTNSGWHS 137
+SGWH+
Sbjct: 449 -----------PASSGWHA 456
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 37.0 bits (84), Expect = 0.006
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 36 PPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSARE----PASNSR 91
PP LQP A P HP + P + P TR + +R + GG A E +R
Sbjct: 11 PPTMTGDLQPRQVASSPGHPSQPPLEDNTPATRTTKGAR-EAGGQAQAMELPEAQPRQAR 69
Query: 92 RGQPRETDLRGHPGSQSSRGGGHDPRLPVRPP 123
G+ + LRG S + G P R P
Sbjct: 70 DGELKPPSLRGQAPSSTPGKRGSPQTPPGRSP 101
Score = 30.4 bits (67), Expect = 0.54
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 19/93 (20%)
Query: 51 RPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSARE---------------PASNSRRGQP 95
RP+H P PP +G + G+P +++ PAS R Q
Sbjct: 2510 RPNHSRGDPSHVTQPPPAQGSKEVLRAPGSPHSQQLHPPSPTEHEVDVKTPASKPRPDQA 2569
Query: 96 RETDLRGHPGSQSSRGGGHDPRLPV--RPPHVE 126
RE +L HP R G R P P H E
Sbjct: 2570 REDEL--HPKQAEKREGRRWRREPTVDSPSHSE 2600
>gi|124494251 BCL2-associated athanogene isoform 1L [Homo sapiens]
Length = 345
Score = 37.0 bits (84), Expect = 0.006
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 29 QRWSSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPAS 88
QR ++RP G R RL + A RP R P + PP AQ G PS R PA
Sbjct: 3 QRGGARRPRGDRERLGSRLRALRPG---REPRQSEPP---------AQRGPPPSGRPPAR 50
Query: 89 NSRRGQPRET 98
++ G R T
Sbjct: 51 STASGHDRPT 60
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 37.0 bits (84), Expect = 0.006
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 44 QPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGH 103
+PC++ PRP+ P E+PP + R + +PG P+ E G+P + L G
Sbjct: 839 EPCLS-PRPEESHLSPELEKPPLSPRPEKPPEEPGQCPAPEELPLFPPPGEPSLSPLLGE 897
Query: 104 PGSQSSRGGGHDPRLPVRPPHVEEVVVTNSGWH--SPRTLEP 143
P +P P P EE+ ++ SG SP+ + P
Sbjct: 898 PALS-------EPGEPPLSPLPEELPLSPSGEPSLSPQLMPP 932
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 37.0 bits (84), Expect = 0.006
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 37 PGSRARLQPCVAAPRPDHPLRRPGRERPPP-------TRRGQTSRAQPGGNPSAREPASN 89
P +R+R QP ++AP P P R P PPP RG R++PG P R S
Sbjct: 110 PRARSRSQPGLSAP-PPPPARPPPPPPPPPPPAPRPRAWRGSRRRSRPGSRPQTRRSCSG 168
Query: 90 SRRG 93
G
Sbjct: 169 DLDG 172
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 36.6 bits (83), Expect = 0.007
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 36 PPGSRARLQPCVAAPRPDH---PLRRPGRERPPPTRR--GQTSRAQPGGNPSAREPASNS 90
P GS+ V P PD P+ PG + PP R G+ AQPG A P
Sbjct: 739 PRGSKG----AVGLPGPDGSPGPIGLPGPDGPPGERGLPGEVLGAQPGPRGDAGVPGQPG 794
Query: 91 RRGQPRETDLRGHPGSQSSRGGGHDPRLPVRP 122
+G P + RG PG + S+G P L +P
Sbjct: 795 LKGLPGD---RGPPGFRGSQGMPGMPGLKGQP 823
Score = 28.1 bits (61), Expect = 2.7
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 65 PPTRRGQTSRAQPGGNP--SAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRLPVRP 122
P +G+ P G P S + RG P +G PGSQ G DP LP P
Sbjct: 333 PRGPKGEAGDPGPPGLPAYSPHPSLAKGARGDPGFPGAQGEPGSQGEPG---DPGLPGPP 389
Score = 28.1 bits (61), Expect = 2.7
Identities = 29/87 (33%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 36 PPGSRARLQPCVAAPRPDHPLRRPG---RERPPPTRRGQTSRAQPGGNPSAREPASNSRR 92
PPG L AP + PL PG RE P R PG P + S R
Sbjct: 837 PPG----LHGFPGAPGQEGPLGLPGIPGREGLPGDRGDPGDTGAPG--PVGMKGLSGDR- 889
Query: 93 GQPRETDLRGHPGSQSSRGGGHDPRLP 119
G T +GHPGS +G P P
Sbjct: 890 GDAGFTGEQGHPGSPGFKGIDGMPGTP 916
Score = 27.3 bits (59), Expect = 4.5
Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 36 PPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQP 95
PPGS LQ P + PG + P + R PG SA P S G P
Sbjct: 1258 PPGSPG-LQGFPGITPPSNISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNP 1316
Query: 96 RETDLRGHPGSQSSRGGGHDPRLPVRP 122
G PG+ ++G D RP
Sbjct: 1317 ------GAPGTPGTKGWAGDSGPQGRP 1337
Score = 26.6 bits (57), Expect = 7.7
Identities = 18/63 (28%), Positives = 22/63 (34%)
Query: 59 PGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGGHDPRL 118
PG PP R Q PG P + + G L G PG+ G P +
Sbjct: 799 PGDRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQPGLYGPPGLHGFPGAPGQEGPLGLPGI 858
Query: 119 PVR 121
P R
Sbjct: 859 PGR 861
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 36.2 bits (82), Expect = 0.010
Identities = 23/78 (29%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 59 PGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRG--GGHDP 116
PG + PP + + R PG + P G P L+G PG RG G P
Sbjct: 1283 PGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGP 1342
Query: 117 RLPVRPPHVEEVVVTNSG 134
R P P V+ G
Sbjct: 1343 RGPKGEPGAPGQVIGGEG 1360
Score = 30.4 bits (67), Expect = 0.54
Identities = 28/95 (29%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 36 PPGSRARL----QPCVAAPRP-DHPLRRPGRERPP--PTRRGQTSRAQPGGNPSAREPAS 88
PPG + P PR D + G E PP P G+ G P R P
Sbjct: 1611 PPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVG 1670
Query: 89 NSR-RGQPRETDLRGHPGSQSSRGGGHDPRLPVRP 122
+G P E G PGS +G +P P P
Sbjct: 1671 EKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPP 1705
Score = 30.4 bits (67), Expect = 0.54
Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 52 PDHPLRRPGRERPPPTRRGQTSRAQPGGNP---SAREPASNSRRGQPRETDLRGHPGS 106
P P PG PP GQ PGG E S +G P E LRG PGS
Sbjct: 1885 PQGPPGLPGPVGPP----GQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGS 1938
Score = 29.6 bits (65), Expect = 0.91
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 50 PRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSS 109
P P P PG PP G + G+P P RG+P G PG +
Sbjct: 2436 PGPLGPPGPPGSVGPP----GASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGP 2491
Query: 110 RG 111
RG
Sbjct: 2492 RG 2493
Score = 28.9 bits (63), Expect = 1.6
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 14/76 (18%)
Query: 59 PGRERPPPTRRGQTSRAQPGGNPSAREPASNS------------RRGQPRETDLRGHPGS 106
PG + PP G+ R PG + A EP G+P E RG G
Sbjct: 2011 PGPQGPPGLALGE--RGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGE 2068
Query: 107 QSSRGGGHDPRLPVRP 122
+ +G P LP P
Sbjct: 2069 RGEQGRDGPPGLPGTP 2084
Score = 28.5 bits (62), Expect = 2.0
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 53 DHPLRRPGRERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGG 112
D P PG PP + S +PG P + +G P +G PGS +G
Sbjct: 2075 DGPPGLPGTPGPPGPPGPKVSVDEPG-------PGLSGEQGPPGLKGAKGEPGSNGDQGP 2127
Query: 113 GHDPRLP 119
D +P
Sbjct: 2128 KGDRGVP 2134
Score = 26.6 bits (57), Expect = 7.7
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 50 PRPDHPLRRP----GRERPPPTRRGQTSRAQPGGNPSAREPA----SNSRRGQPRETDLR 101
P+ D +R P G PP G R+ G P A P+ + + G P L
Sbjct: 1756 PQGDPGVRGPAGEKGDRGPP----GLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLP 1811
Query: 102 GHPGSQSSRGGGHDPRLPVRP 122
G G Q G P LP +P
Sbjct: 1812 GLRGEQGLPGPSGPPGLPGKP 1832
>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
Length = 609
Score = 36.2 bits (82), Expect = 0.010
Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 16/113 (14%)
Query: 2 RHQHGRGTRVGSATNANILLLLTPNFLQRWSSQRPPGSRARLQPCVAAPR-PDHPLRRPG 60
R + G G R SA+ LT + + +RPPG P AAP PD PG
Sbjct: 484 RRRPGPGPRSASASLLPDAFALTAFECEPQALRRPPG------PFPAAPAAPDGA--DPG 535
Query: 61 RERPPPTRRGQTSRAQPGGNPSAREPASNSRRGQPRETDLRGHPGSQSSRGGG 113
PP+ +++ PG PSA A + R G G PG + GGG
Sbjct: 536 EAPTPPS----SAQRSPGPRPSAHSHAGSLRPGLSASW---GEPGGLRAAGGG 581
Score = 26.6 bits (57), Expect = 7.7
Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 25 PNFLQRWSSQRPPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQPGGNPSAR 84
P FL RW S + A L R L + PP R +++ + PSA
Sbjct: 409 PAFLPRWGSGEDLAALAHLVLPAGPERRRASLLAFAEDAPPSRARRRSAESLLSLRPSAL 468
Query: 85 EPASNSRRGQPRETDLRGHPGSQSSRGG 112
+ R P PGS R G
Sbjct: 469 DSGPRGARDSP--------PGSPRRRPG 488
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 35.8 bits (81), Expect = 0.013
Identities = 35/119 (29%), Positives = 40/119 (33%), Gaps = 17/119 (14%)
Query: 36 PPGSRARLQPCVAAPRPDHPLRRPGRERPPPTRRGQTSRAQP-------------GGNPS 82
PP L P PD P RR R PP + R+ P GN
Sbjct: 152 PPAPETLLAPPPLPSTPDPP-RRELRAPSPPVEHPRLLRSVPTPLVMAQKISERMAGN-E 209
Query: 83 AREPASNSRRGQPRE--TDLRGHPGSQSSRGGGHDPRLPVRPPHVEEVVVTNSGWHSPR 139
A P S R G+P E T P S G P P P ++VTN PR
Sbjct: 210 ALSPTSPFREGRPGEWRTPAARGPRSGDPGPGPSHPAQPKAPRFPSNIIVTNGAAREPR 268
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 35.8 bits (81), Expect = 0.013
Identities = 48/167 (28%), Positives = 61/167 (36%), Gaps = 26/167 (15%)
Query: 2 RHQHGRG-----TRVGSATNANILLLLTPNF--LQRWSSQRPP------GSRARLQ-PCV 47
RH+ RG +++G T L L T L RPP G RA Q P V
Sbjct: 116 RHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPV 175
Query: 48 AAPRPDHPLRRPG------RERPPPTRRGQTSRAQPGGN-PSAREPASNSRRGQPRETDL 100
P R+ G + +PP + QPG P AR PA SR G +
Sbjct: 176 YLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAES 235
Query: 101 RGHPGSQSSR----GGGHDPRLPVRPPHVEEVVVTNSGWHSPRTLEP 143
RG +Q + G H P P P E ++ PR EP
Sbjct: 236 RGSGPAQPAHLPLPGPAHSP-APPAPELREGRAPGSTAGRRPRPREP 281
Score = 26.6 bits (57), Expect = 7.7
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 35 RPP------GSRARLQPCVAAP-RPDH-PLRRPGRERPPPT---RRGQTSRAQPGGNPSA 83
RPP G R R + + P +P H PL P PP R G+ + G P
Sbjct: 219 RPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
Query: 84 REPASNSRRG 93
REP + G
Sbjct: 279 REPQAAEESG 288
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 35.8 bits (81), Expect = 0.013
Identities = 48/167 (28%), Positives = 61/167 (36%), Gaps = 26/167 (15%)
Query: 2 RHQHGRG-----TRVGSATNANILLLLTPNF--LQRWSSQRPP------GSRARLQ-PCV 47
RH+ RG +++G T L L T L RPP G RA Q P V
Sbjct: 116 RHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPV 175
Query: 48 AAPRPDHPLRRPG------RERPPPTRRGQTSRAQPGGN-PSAREPASNSRRGQPRETDL 100
P R+ G + +PP + QPG P AR PA SR G +
Sbjct: 176 YLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAES 235
Query: 101 RGHPGSQSSR----GGGHDPRLPVRPPHVEEVVVTNSGWHSPRTLEP 143
RG +Q + G H P P P E ++ PR EP
Sbjct: 236 RGSGPAQPAHLPLPGPAHSP-APPAPELREGRAPGSTAGRRPRPREP 281
Score = 26.6 bits (57), Expect = 7.7
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 35 RPP------GSRARLQPCVAAP-RPDH-PLRRPGRERPPPT---RRGQTSRAQPGGNPSA 83
RPP G R R + + P +P H PL P PP R G+ + G P
Sbjct: 219 RPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
Query: 84 REPASNSRRG 93
REP + G
Sbjct: 279 REPQAAEESG 288
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 35.8 bits (81), Expect = 0.013
Identities = 48/167 (28%), Positives = 61/167 (36%), Gaps = 26/167 (15%)
Query: 2 RHQHGRG-----TRVGSATNANILLLLTPNF--LQRWSSQRPP------GSRARLQ-PCV 47
RH+ RG +++G T L L T L RPP G RA Q P V
Sbjct: 116 RHRKNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRPPV 175
Query: 48 AAPRPDHPLRRPG------RERPPPTRRGQTSRAQPGGN-PSAREPASNSRRGQPRETDL 100
P R+ G + +PP + QPG P AR PA SR G +
Sbjct: 176 YLGNKPTPPRQEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARPPAYESREGPRGRAES 235
Query: 101 RGHPGSQSSR----GGGHDPRLPVRPPHVEEVVVTNSGWHSPRTLEP 143
RG +Q + G H P P P E ++ PR EP
Sbjct: 236 RGSGPAQPAHLPLPGPAHSP-APPAPELREGRAPGSTAGRRPRPREP 281
Score = 26.6 bits (57), Expect = 7.7
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 35 RPP------GSRARLQPCVAAP-RPDH-PLRRPGRERPPPT---RRGQTSRAQPGGNPSA 83
RPP G R R + + P +P H PL P PP R G+ + G P
Sbjct: 219 RPPAYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
Query: 84 REPASNSRRG 93
REP + G
Sbjct: 279 REPQAAEESG 288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,616,036
Number of Sequences: 37866
Number of extensions: 571192
Number of successful extensions: 4775
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 665
Number of HSP's that attempted gapping in prelim test: 3046
Number of HSP's gapped (non-prelim): 2188
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.