Guide to the Human Genome
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Name: LOC100293285 Sequence: fasta or formatted (144aa) NCBI GI: 239757038
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          9           2
 C cysteine            0.7          1           1
 D aspartate           2.1          3           1
 E glutamate           4.2          6           2
 F phenylalanine       0.7          1           1
 G glycine            10.4         15           3
 H histidine           4.9          7           1
 I isoleucine          0.7          1           1
 K lysine              0.0          0           0
 L leucine             6.9         10           4
 M methionine          0.7          1           1
 N asparagine          4.2          6           1
 P proline            15.3         22           3
 Q glutamine           5.6          8           1
 R arginine           16.7         24           2
 S serine              9.0         13           2
 T threonine           5.6          8           1
 V valine              4.9          7           3
 W tryptophan          1.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289533          1.000   PREDICTED: hypothetical protein 
LOC100289533          1.000   PREDICTED: hypothetical protein XP_002343635 
POU6F2                0.078   POU domain, class 6, transcription factor 2 
WDR81                 0.060   PREDICTED: WD repeat domain 81 
COL5A2                0.053   alpha 2 type V collagen preproprotein 
YLPM1                 0.053   YLP motif containing 1 
COL12A1               0.053   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.053   collagen, type XII, alpha 1 long isoform precursor [...
HEG1                  0.053   HEG homolog 1 
WIPF1                 0.050   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.050   WAS/WASL interacting protein family, member 1 
C2orf71               0.050   hypothetical protein LOC388939 
SRRM2                 0.050   splicing coactivator subunit SRm300 
PRB2                  0.046   proline-rich protein BstNI subfamily 2 
FNDC1                 0.046   fibronectin type III domain containing 1 
PRB4                  0.046   proline-rich protein BstNI subfamily 4 precursor [Ho...
LOC100290372          0.043   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.043   PREDICTED: hypothetical protein XP_002342652 
ZNF469                0.043   zinc finger protein 469 
BAG1                  0.043   BCL2-associated athanogene isoform 1L 
MLL2                  0.043   myeloid/lymphoid or mixed-lineage leukemia 2 
USP51                 0.043   ubiquitin specific protease 51 
COL4A2                0.043   alpha 2 type IV collagen preproprotein 
COL7A1                0.039   alpha 1 type VII collagen precursor 
GPR153                0.039   G protein-coupled receptor 153 
C10orf47              0.039   hypothetical protein LOC254427 
LOC100127891          0.039   PREDICTED: similar to hCG2042508 
LOC100127891          0.039   PREDICTED: similar to hCG2042508 
LOC100127891          0.039   PREDICTED: similar to hCG2042508 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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