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Search of human proteins with 239745934
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
(303 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 617 e-177
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 617 e-177
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 154 9e-38
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 52 6e-07
gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens] 50 3e-06
gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens] 50 3e-06
gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens] 50 3e-06
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 49 4e-06
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 49 4e-06
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 48 1e-05
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 47 2e-05
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 47 2e-05
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 47 2e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 46 4e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 45 6e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 45 6e-05
gi|126090909 engrailed homeobox 1 [Homo sapiens] 45 8e-05
gi|194272140 dendrin [Homo sapiens] 45 1e-04
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|115511036 alpha-kinase 3 [Homo sapiens] 44 1e-04
gi|39812378 RAN binding protein 9 [Homo sapiens] 44 2e-04
gi|239745480 PREDICTED: hypothetical protein XP_002343504 [Homo ... 44 2e-04
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 44 2e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo ... 44 2e-04
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 44 2e-04
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 44 2e-04
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 44 2e-04
gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 43 3e-04
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 617 bits (1592), Expect = e-177
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MYSWFSPTWSAAVGTMAPEAAFRAVTGVVVVVFHLLRIIGVIVVLFHLILLVVLRILGLL 60
MYSWFSPTWSAAVGTMAPEAAFRAVTGVVVVVFHLLRIIGVIVVLFHLILLVVLRILGLL
Sbjct: 1 MYSWFSPTWSAAVGTMAPEAAFRAVTGVVVVVFHLLRIIGVIVVLFHLILLVVLRILGLL 60
Query: 61 GVAVLLLLLLGDHVLLFLLLLALVVIVHHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPG 120
GVAVLLLLLLGDHVLLFLLLLALVVIVHHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPG
Sbjct: 61 GVAVLLLLLLGDHVLLFLLLLALVVIVHHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPG 120
Query: 121 RRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPER 180
RRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPER
Sbjct: 121 RRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPER 180
Query: 181 GHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGG 240
GHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGG
Sbjct: 181 GHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGG 240
Query: 241 AAERGAQLAKCPASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHSLPSP 300
AAERGAQLAKCPASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHSLPSP
Sbjct: 241 AAERGAQLAKCPASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHSLPSP 300
Query: 301 YGN 303
YGN
Sbjct: 301 YGN 303
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 617 bits (1592), Expect = e-177
Identities = 303/303 (100%), Positives = 303/303 (100%)
Query: 1 MYSWFSPTWSAAVGTMAPEAAFRAVTGVVVVVFHLLRIIGVIVVLFHLILLVVLRILGLL 60
MYSWFSPTWSAAVGTMAPEAAFRAVTGVVVVVFHLLRIIGVIVVLFHLILLVVLRILGLL
Sbjct: 1 MYSWFSPTWSAAVGTMAPEAAFRAVTGVVVVVFHLLRIIGVIVVLFHLILLVVLRILGLL 60
Query: 61 GVAVLLLLLLGDHVLLFLLLLALVVIVHHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPG 120
GVAVLLLLLLGDHVLLFLLLLALVVIVHHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPG
Sbjct: 61 GVAVLLLLLLGDHVLLFLLLLALVVIVHHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPG 120
Query: 121 RRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPER 180
RRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPER
Sbjct: 121 RRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPER 180
Query: 181 GHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGG 240
GHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGG
Sbjct: 181 GHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGG 240
Query: 241 AAERGAQLAKCPASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHSLPSP 300
AAERGAQLAKCPASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHSLPSP
Sbjct: 241 AAERGAQLAKCPASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHSLPSP 300
Query: 301 YGN 303
YGN
Sbjct: 301 YGN 303
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 154 bits (389), Expect = 9e-38
Identities = 118/253 (46%), Positives = 138/253 (54%), Gaps = 42/253 (16%)
Query: 8 TWSAAVGTMAPEAAFRAVTGVVVVVFHLLRIIGVIVVLFHLILLVVLRILGLLGVAVLLL 67
TWSAAVGTMAPEAAF AVTGVVVV F LL+IIG+ +VL HL+LLVVLR+LGLL VAVL L
Sbjct: 69 TWSAAVGTMAPEAAFCAVTGVVVV-FQLLQIIGISLVLLHLMLLVVLRLLGLLDVAVLFL 127
Query: 68 LLLGDHVLLFLLLLALVVIVHHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPG 127
L A VVIVHHFV GPPGRGGPGQVAAAA A PAS +P PGR C G
Sbjct: 128 L-------------APVVIVHHFVHGPPGRGGPGQVAAAAAAAPAS-SPLPPGR--WCLG 171
Query: 128 CCR--GAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSC 185
R A+ AP WA++A A + +R P + S GP+ G
Sbjct: 172 DQRRLPPATAAP----PWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLG---- 223
Query: 186 AADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAV-----------RLDSGRGWRGK 234
G +GA A G+ +++ G LG R + R GRGW G
Sbjct: 224 --GGGGGAGAGAGAGAGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGL 281
Query: 235 TPGAGG--AAERG 245
AGG +AE G
Sbjct: 282 RGRAGGPRSAEAG 294
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 52.0 bits (123), Expect = 6e-07
Identities = 65/224 (29%), Positives = 76/224 (33%), Gaps = 26/224 (11%)
Query: 92 DGPPG-RGGPGQVAAAA----PAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAA 146
DG PG +G PG A P P PP P PG S P + A
Sbjct: 820 DGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGA 879
Query: 147 AVAAGP----GRSAPQREPRAAWAACPAGPSSAAGP--ERGHVSCAADEPGTERSGAAAA 200
A GP G + P P A GP GP G V G+ A
Sbjct: 880 AGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA 939
Query: 201 RGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQ 260
G AGA G G + V L RG RG G + E G Q S A G++
Sbjct: 940 DGPAGAPGT-PGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQ----GPSGASGER 994
Query: 261 SLRGPLAGAQSRPDLLPASPLSRLGEEGK-GAPKYHSLPSPYGN 303
GP+ P L P GE G+ GAP P G+
Sbjct: 995 GPPGPMG-----PPGLAGPP----GESGREGAPGAEGSPGRDGS 1029
Score = 50.8 bits (120), Expect = 1e-06
Identities = 65/215 (30%), Positives = 80/215 (37%), Gaps = 23/215 (10%)
Query: 91 VDGPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAA 150
V GPPG G A P + P PG R PG RG GA A
Sbjct: 456 VQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGG-PG-SRG-FPGADGVAGPKGPAGERG 512
Query: 151 GPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASSR- 209
PG + P+ P A AG A G ++ + PG + G G AG R
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKG-----LTGSPGSPGPD--GKTGPPGPAGQDGRP 565
Query: 210 -GRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRGPLAG 268
G GA + + +G G+ AG G A PA K G+ AG
Sbjct: 566 GPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD-GE-------AG 617
Query: 269 AQSRPDLLPASPLSRLGEEG-KGAPKYHSLPSPYG 302
AQ P PA P GE+G G+P + LP P G
Sbjct: 618 AQGPPG--PAGPAGERGEQGPAGSPGFQGLPGPAG 650
Score = 43.5 bits (101), Expect = 2e-04
Identities = 62/225 (27%), Positives = 76/225 (33%), Gaps = 50/225 (22%)
Query: 93 GPPG-RGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAG 151
GP G RG PG P PA +A P PG A G
Sbjct: 791 GPTGARGAPGDRGEPGPPGPAGFAGP-PG------------ADGQ--------------- 822
Query: 152 PGRSAPQREPRAAWAACPAGPSSAAGPER--GHVSCAADEPGTERSGAAAARGSAGASSR 209
PG + A A P GP+ AGP G+V + +G A G GA+ R
Sbjct: 823 PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR 882
Query: 210 -----GRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRG 264
G G + G+G RG+T AG E G PA + G G
Sbjct: 883 VGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK-GSPGADG 941
Query: 265 PLAGAQSRPDLLPASPLSRLGEEG-------KGAPKYHSLPSPYG 302
P AGA P P G+ G +G + LP P G
Sbjct: 942 P-AGAPGTP-----GPQGIAGQRGVVGLPGQRGERGFPGLPGPSG 980
Score = 43.1 bits (100), Expect = 3e-04
Identities = 59/215 (27%), Positives = 72/215 (33%), Gaps = 30/215 (13%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGP 152
GPPG GP + AP A +P + G PG P A A GP
Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDG----SPGAKGDRGETGPAGPPGAPGAPGAPGP 1056
Query: 153 ----GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASS 208
G+S + E A A P GP A GP G D+ T G +G G S
Sbjct: 1057 VGPAGKSGDRGETGPAGPAGPVGPVGARGP-AGPQGPRGDKGETGEQGDRGIKGHRGFSG 1115
Query: 209 RGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRGPLAG 268
+G G G +G + +G A RG A G L GP+
Sbjct: 1116 L-QGPPGP---------PGSPGEQGPSGASGPAGPRGPP-GSAGAPGKDGLNGLPGPIG- 1163
Query: 269 AQSRPDLLPASPLSRLGEEGK-GAPKYHSLPSPYG 302
P P R G+ G G P P P G
Sbjct: 1164 --------PPGPRGRTGDAGPVGPPGPPGPPGPPG 1190
Score = 40.8 bits (94), Expect = 0.001
Identities = 73/246 (29%), Positives = 87/246 (35%), Gaps = 67/246 (27%)
Query: 91 VDGPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAA 150
+DG G GP +P + AP Q G R PG G P
Sbjct: 273 LDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGL-PG-----ERGRP------------G 314
Query: 151 GPGRSAPQREPRAAWAACPAGPSSAAGPE--RGHVSCAAD-----------------EPG 191
PG + + A AA P GP+ AGP G V + EPG
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPG 374
Query: 192 TE-RSGAAAARGSAGASSR--GRGALGAWARHSAVRLDSGRGWRG-KTPGA-----GGAA 242
+GAA G+ GA + +GA GA A RG G + PG G +
Sbjct: 375 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSG 434
Query: 243 ERGAQLAKCPASKAFGDQSLRGP--LAGAQSRPDLLPASPLSRLGEEGK----GAPKYHS 296
E GA P SK GD +G G Q P PA GEEGK G P
Sbjct: 435 EPGA-----PGSK--GDTGAKGEPGPVGVQGPPG--PA------GEEGKRGARGEPGPTG 479
Query: 297 LPSPYG 302
LP P G
Sbjct: 480 LPGPPG 485
Score = 37.4 bits (85), Expect = 0.017
Identities = 64/252 (25%), Positives = 79/252 (31%), Gaps = 46/252 (18%)
Query: 91 VDGPPGRGGP-----------GQVAAAAPAPPASWAPP----QPGRRPTC----PGCCRG 131
V GPPG GP + A AP P S P PG R P RG
Sbjct: 687 VQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRG 746
Query: 132 -----AASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGP--ERGHVS 184
A G+P PG + + + + PAGP+ A G +RG
Sbjct: 747 DAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPG 806
Query: 185 -----------CAADEPGTE-RSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWR 232
A +PG + G A A+G AG G G V +G R
Sbjct: 807 PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA-GPAGPPGPIGNVGAPGAKGAR 865
Query: 233 GKT--PGAGGAAERGAQLAKCPASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKG 290
G PGA G ++ S G GP + P R GE G
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPP 925
Query: 291 APKYHSLPSPYG 302
P P P G
Sbjct: 926 GP-----PGPAG 932
Score = 32.0 bits (71), Expect = 0.69
Identities = 61/243 (25%), Positives = 72/243 (29%), Gaps = 45/243 (18%)
Query: 91 VDGPPGRGGPGQVAAAA--------PAPPASWAPPQPGRRPTCPGCCRGAASG------- 135
V+GP G GP A P P PP P P PG A
Sbjct: 110 VEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDE 169
Query: 136 ------------APRWVRTWAAAAVAAGP-GRSAPQREPRAAWAACPAGPSSAAGPERGH 182
P R A GP G P EP A+ P GP GP +
Sbjct: 170 KSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKN 229
Query: 183 VSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAA 242
D+ + G RG G +GA G + RG+ G G A
Sbjct: 230 ----GDDGEAGKPGRPGERGPPGP----QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAG 281
Query: 243 ERG--AQLAKCPASKAFGDQSLRGPLAGAQSRPDLL-PASPLSRLGEEGKGAPKYHSLPS 299
G + + A G RG L G + RP PA G G P P
Sbjct: 282 PAGPKGEPGSPGENGAPGQMGPRG-LPGERGRPGAPGPAGARGNDGATGAAGP-----PG 335
Query: 300 PYG 302
P G
Sbjct: 336 PTG 338
>gi|239756829 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 49.7 bits (117), Expect = 3e-06
Identities = 48/155 (30%), Positives = 61/155 (39%), Gaps = 18/155 (11%)
Query: 98 GGPGQVAAAAPAPPASWAP--PQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRS 155
G PG+ + PA P P P P PTC A + + + PGR
Sbjct: 796 GAPGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCSPEPGRE 855
Query: 156 APQREPRAAWAACPAGPSSAAGPERGHVSC--------AADEPGTERSGAA---AARGSA 204
AP EP AA A + S E+GH+ C +A + +GA G
Sbjct: 856 APGPEPAAA--AVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHRWMMEGQR 913
Query: 205 GAS--SRGRGALGAWARHSAVRLDSGRGWR-GKTP 236
GA SRGR A H A R+ GRG R G +P
Sbjct: 914 GAPRRSRGRPVSRGGAGHKAKRVTGGRGGRQGPSP 948
>gi|239751322 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 49.7 bits (117), Expect = 3e-06
Identities = 48/155 (30%), Positives = 61/155 (39%), Gaps = 18/155 (11%)
Query: 98 GGPGQVAAAAPAPPASWAP--PQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRS 155
G PG+ + PA P P P P PTC A + + + PGR
Sbjct: 796 GAPGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCSPEPGRE 855
Query: 156 APQREPRAAWAACPAGPSSAAGPERGHVSC--------AADEPGTERSGAA---AARGSA 204
AP EP AA A + S E+GH+ C +A + +GA G
Sbjct: 856 APGPEPAAA--AVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHRWMMEGQR 913
Query: 205 GAS--SRGRGALGAWARHSAVRLDSGRGWR-GKTP 236
GA SRGR A H A R+ GRG R G +P
Sbjct: 914 GAPRRSRGRPVSRGGAGHKAKRVTGGRGGRQGPSP 948
>gi|239745821 PREDICTED: zinc finger protein 385C [Homo sapiens]
Length = 1082
Score = 49.7 bits (117), Expect = 3e-06
Identities = 48/155 (30%), Positives = 61/155 (39%), Gaps = 18/155 (11%)
Query: 98 GGPGQVAAAAPAPPASWAP--PQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRS 155
G PG+ + PA P P P P PTC A + + + PGR
Sbjct: 796 GAPGEPQSKVPAAPPLGPPLQPPPTPDPTCREPAHSELLDAASSSSSSSCPPCSPEPGRE 855
Query: 156 APQREPRAAWAACPAGPSSAAGPERGHVSC--------AADEPGTERSGAA---AARGSA 204
AP EP AA A + S E+GH+ C +A + +GA G
Sbjct: 856 APGPEPAAA--AVGSSMSGEGRSEKGHLYCPTCKVTVNSASQLQAHNTGAKHRWMMEGQR 913
Query: 205 GAS--SRGRGALGAWARHSAVRLDSGRGWR-GKTP 236
GA SRGR A H A R+ GRG R G +P
Sbjct: 914 GAPRRSRGRPVSRGGAGHKAKRVTGGRGGRQGPSP 948
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 49.3 bits (116), Expect = 4e-06
Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 28/194 (14%)
Query: 93 GPPGRGGPGQVAAAAPA-------------PPASWAPPQPGRRPTCPGCCRGAASGAPRW 139
G PG G V+A++P PP + P+P PG RG GA R
Sbjct: 122 GSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS-----PGGRRGRPLGAAR- 175
Query: 140 VRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAA 199
PG S +EPR +A +S AG G R G+
Sbjct: 176 -------GTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPR-GSRR 227
Query: 200 ARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGD 259
R AG G G A + LD+GRG R + PG G E ++ A
Sbjct: 228 LRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPG-WSRERAGAGLSR 286
Query: 260 QSLRGPLAGAQSRP 273
S + P +G+ +RP
Sbjct: 287 DSPQVPRSGSWARP 300
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 49.3 bits (116), Expect = 4e-06
Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 28/194 (14%)
Query: 93 GPPGRGGPGQVAAAAPA-------------PPASWAPPQPGRRPTCPGCCRGAASGAPRW 139
G PG G V+A++P PP + P+P PG RG GA R
Sbjct: 122 GSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS-----PGGRRGRPLGAAR- 175
Query: 140 VRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAA 199
PG S +EPR +A +S AG G R G+
Sbjct: 176 -------GTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPR-GSRR 227
Query: 200 ARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGD 259
R AG G G A + LD+GRG R + PG G E ++ A
Sbjct: 228 LRPDAGKFPEASGGKGQRAAGAERVLDNGRGPRSRLPGLAGGVEPPG-WSRERAGAGLSR 286
Query: 260 QSLRGPLAGAQSRP 273
S + P +G+ +RP
Sbjct: 287 DSPQVPRSGSWARP 300
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 47.8 bits (112), Expect = 1e-05
Identities = 58/183 (31%), Positives = 73/183 (39%), Gaps = 14/183 (7%)
Query: 104 AAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRA 163
AAAA +P A+ P R R + R + A A AAG SA A
Sbjct: 305 AAAASSPFATSIRPLDTFRALSHPYSRPELLCSFRHPGLYQAPAAAAGLN-SAASAAAAA 363
Query: 164 AWAACPAGPSSAAG--PERGHVSCAADEPGTERSGAAAARGSAGA-SSRGRGALGAWARH 220
A AA A ++AAG P G C+ + +S AAAA +A A SRG G G
Sbjct: 364 AAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRGGGGGGG---- 419
Query: 221 SAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRGPLAGAQSRPDLLPASP 280
G G G GAGG ++ G A + F S A S PD +P
Sbjct: 420 ------GGGGGGGGGAGAGGGSDFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEAP 473
Query: 281 LSR 283
L+R
Sbjct: 474 LTR 476
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 47.4 bits (111), Expect = 2e-05
Identities = 55/184 (29%), Positives = 67/184 (36%), Gaps = 37/184 (20%)
Query: 91 VDGPPGRGGPGQVAAAAPA----PPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAA 146
+D G G PG+ A PA PP APPQ P P
Sbjct: 1 MDARGGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPP-------------------P 41
Query: 147 AVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHV---SCAADEPGTERSGAAAARGS 203
A GPG + PQ PRA A P + GP RG + + PGT + + A
Sbjct: 42 APPPGPGPAPPQHPPRA--EALPPEAADEGGP-RGRLRSRDSSCGRPGTPGAASTAKGSP 98
Query: 204 AGASSRGR------GALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAF 257
G RG G G AR V G PG G A E G++ A PA +
Sbjct: 99 NGECGRGEPQCSPAGPEGP-ARGPKVSFSCRGAASGPAPGPGPAEEAGSEEAG-PAGEPR 156
Query: 258 GDQS 261
G Q+
Sbjct: 157 GSQA 160
Score = 35.8 bits (81), Expect = 0.048
Identities = 40/131 (30%), Positives = 49/131 (37%), Gaps = 13/131 (9%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRT----WAAAAV 148
GP G P V P P + A P P + PG A +PR RT AA
Sbjct: 748 GPLALGSPRLVRRPPPGPAPAAASPGPPPPASPPG-----APASPRAPRTSPYGGLPAAP 802
Query: 149 AAGPGRSAPQ--REPRAAWAACPAGPSSAAGPERGHVSCAADEP--GTERSGAAAARGSA 204
AGP A + R R A+ P+ P A GP ++ P G + AAA
Sbjct: 803 LAGPALPARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPD 862
Query: 205 GASSRGRGALG 215
S GA G
Sbjct: 863 RRDSASPGAAG 873
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 47.4 bits (111), Expect = 2e-05
Identities = 52/194 (26%), Positives = 71/194 (36%), Gaps = 28/194 (14%)
Query: 93 GPPGRGGPGQVAAAAPA-------------PPASWAPPQPGRRPTCPGCCRGAASGAPRW 139
G PG G V+A++P PP + P+P PG RG GA R
Sbjct: 122 GSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPS-----PGGRRGRPLGAAR- 175
Query: 140 VRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAA 199
PG S +EPR +A +S AG G R G+
Sbjct: 176 -------GTGLNPGLSPRLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPR-GSRR 227
Query: 200 ARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGD 259
R AG G G A + L++GRG R + PG G E ++ A
Sbjct: 228 LRPDAGKFPEASGGKGQRAAGAERVLNNGRGPRSRLPGLAGGVEPPG-WSRERAGAGLSR 286
Query: 260 QSLRGPLAGAQSRP 273
S + P +G+ +RP
Sbjct: 287 DSPQVPRSGSWARP 300
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.0 bits (110), Expect = 2e-05
Identities = 70/234 (29%), Positives = 89/234 (38%), Gaps = 32/234 (13%)
Query: 93 GPPGRGGP----GQVAAAAPAP----PASWAPPQPGRRP---TCPGCCRGAASGAPRWVR 141
GPPG GP G+ A P+ P PP G +P PG PR R
Sbjct: 642 GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGER 701
Query: 142 TWAAAAVAAG-PGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAA 200
+ + G G P+ P P G S AGP A PG + G
Sbjct: 702 GFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPG-----AQGPPGLQ--GMPGE 754
Query: 201 RGSAG-ASSRG-RGALGAWARHSAVRLDSGRGWRGK--TPGAGGA-AERGAQLAKCPASK 255
RG+AG A +G RG +G A D GRG G PG GA E+G PA
Sbjct: 755 RGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGS 814
Query: 256 AF-----GDQSLRGPLAGAQ-SRPDLLPASPLSRLGEEGKGAPKYHS-LPSPYG 302
A G++ GP A + P P ++ GE+G+ K + P P G
Sbjct: 815 AGARGAPGERGETGPPGPAGFAGPPGADGQPGAK-GEQGEAGQKGDAGAPGPQG 867
Score = 44.3 bits (103), Expect = 1e-04
Identities = 57/219 (26%), Positives = 72/219 (32%), Gaps = 30/219 (13%)
Query: 93 GPPGRGGPGQVAAAAPA----PPASWAPPQPGRRPTCPGCCRGAAS----GAPRWVRTWA 144
GP G PG A P P + P P PG + + G P +
Sbjct: 364 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG 423
Query: 145 AAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSA 204
A +A PG P+ P A P GP G E G ++ G A +G+
Sbjct: 424 APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTG-EPGIAGFKGEQGPKGEPGPAGPQGAP 482
Query: 205 GASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAF-GDQSLR 263
G + G GA RG G G ERGA P ++ F G L
Sbjct: 483 GPAGE-EGKRGA------------RGEPGGVGPIGPPGERGA-----PGNRGFPGQDGLA 524
Query: 264 GPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHSLPSPYG 302
GP R A P G+ G+ P LP G
Sbjct: 525 GPKGAPGERGPSGLAGPKGANGDPGR--PGEPGLPGARG 561
Score = 44.3 bits (103), Expect = 1e-04
Identities = 61/229 (26%), Positives = 76/229 (33%), Gaps = 52/229 (22%)
Query: 93 GPPG-------RGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAA 145
GPPG RG PG+ P PA +A P PG A G P
Sbjct: 807 GPPGPAGSAGARGAPGERGETGPPGPAGFAGP-PG------------ADGQP-------- 845
Query: 146 AAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAG 205
G + A A P GPS A GP+ G + G A G G
Sbjct: 846 ----GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ-GPTGVTGPKGARGAQGPPGATGFPG 900
Query: 206 ASSR-----GRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQ 260
A+ R G G D +G RG + G A E G Q P + G+
Sbjct: 901 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEK-GEP 959
Query: 261 SLRGPLAGAQSRPDLLPASPLSRLGEEG-------KGAPKYHSLPSPYG 302
GP +GA+ P P G+ G +G + LP P G
Sbjct: 960 GDDGP-SGAEG-----PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSG 1002
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/216 (30%), Positives = 76/216 (35%), Gaps = 29/216 (13%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGP 152
GPPG GP + A P +P G P GAA T A A P
Sbjct: 1017 GPPGPVGPPGLTGPAGEPGREGSPGADG-----PPGRDGAAGVKGDRGETGAVGA----P 1067
Query: 153 GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASSRGRG 212
G P P PAGP+ G +RG A + SG A ARG G RG
Sbjct: 1068 GAPGPPGSPG------PAGPTGKQG-DRGE---AGAQGPMGPSGPAGARGIQGPQG-PRG 1116
Query: 213 ALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRGPLA----- 267
G L RG+ G G G Q A PA + G + GP+
Sbjct: 1117 DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPS-GPRGPPGPVGPSGKD 1175
Query: 268 GAQSRPDLL-PASPLSRLGEEGKGAPKYHSLPSPYG 302
GA P + P P R GE G P + P P G
Sbjct: 1176 GANGIPGPIGPPGPRGRSGETGPAGPPGN--PGPPG 1209
Score = 34.7 bits (78), Expect = 0.11
Identities = 62/223 (27%), Positives = 76/223 (34%), Gaps = 44/223 (19%)
Query: 92 DGPPGRGGPGQVAAAAPAPPASWAPP----QPGRRPTCPGCCRGAAS-GAPRWVRTWAAA 146
DGP G GP PP + PP PG RGAA P+ R
Sbjct: 728 DGPKGASGPA-------GPPGAQGPPGLQGMPGE--------RGAAGIAGPKGDR----- 767
Query: 147 AVAAGPGRSAPQREPRAAWAACPAGPSSAAGP-----ERGHVSCAADEPGTERSGAAAAR 201
G P+ P GP GP E+G V PG +G+A AR
Sbjct: 768 ---GDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVG----PPGP--AGSAGAR 818
Query: 202 GSAGASSRGR-GALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQ 260
G+ G RG G G D G +G+ AG + GA + P S A G Q
Sbjct: 819 GAPG--ERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGP-SGAPGPQ 875
Query: 261 SLRGPLAGAQSRPDLLPASPLSRLGEEGK-GAPKYHSLPSPYG 302
G +R P G G+ G P + P P G
Sbjct: 876 GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG 918
Score = 32.7 bits (73), Expect = 0.41
Identities = 59/225 (26%), Positives = 70/225 (31%), Gaps = 38/225 (16%)
Query: 93 GPPG-RGGPGQVAAAAPAPPASWAPP-QPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAA 150
GP G RG PG A AP P P +PG PG P
Sbjct: 204 GPMGPRGPPGP--AGAPGPQGFQGNPGEPGE----PGVSGPMGPRGP--------PGPPG 249
Query: 151 GPGRSAPQREPRAAWAACPAGPSSAAG--------PERGHVSCAADEPGTERSGAAAARG 202
PG +P A P GP A G +GH + +GA +G
Sbjct: 250 KPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG 309
Query: 203 SAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSL 262
+G+ G+ G G RG+T AG A RG PA
Sbjct: 310 ESGSPGEN-GSPGPMGPRGLP------GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA 362
Query: 263 RGP-LAGAQSRPDLLPASPLSRLGEEG----KGAPKYHSLPSPYG 302
GP GA A P G EG +G P P P G
Sbjct: 363 GGPGFPGAPGAKG--EAGPTGARGPEGAQGPRGEPGTPGSPGPAG 405
Score = 31.6 bits (70), Expect = 0.91
Identities = 65/216 (30%), Positives = 75/216 (34%), Gaps = 30/216 (13%)
Query: 93 GPPGRGGP-GQVA-AAAPAPPASWAPPQPGRRPTCPGCC----RGAASGAPRWVRTWAAA 146
G PG GP G+V + AP PP P PG A+G P
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKA---GEK 620
Query: 147 AVAAGPG-RSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAG 205
+ PG R P ++ AA P GP+ AG ERG PG SG G G
Sbjct: 621 GLPGAPGLRGLPGKDGETG-AAGPPGPAGPAG-ERGEQGA----PGP--SGFQGLPGPPG 672
Query: 206 ASSRG--RGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQ----LAKCPASKAFGD 259
G G G A L RG RG G +G Q L P + G
Sbjct: 673 PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD--GP 730
Query: 260 QSLRGPLA--GAQSRPDLLPASPLSRLGEEGKGAPK 293
+ GP GAQ P L P R G G PK
Sbjct: 731 KGASGPAGPPGAQGPPG-LQGMPGER-GAAGIAGPK 764
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 47.0 bits (110), Expect = 2e-05
Identities = 70/234 (29%), Positives = 89/234 (38%), Gaps = 32/234 (13%)
Query: 93 GPPGRGGP----GQVAAAAPAP----PASWAPPQPGRRP---TCPGCCRGAASGAPRWVR 141
GPPG GP G+ A P+ P PP G +P PG PR R
Sbjct: 573 GPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGER 632
Query: 142 TWAAAAVAAG-PGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAA 200
+ + G G P+ P P G S AGP A PG + G
Sbjct: 633 GFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPG-----AQGPPGLQ--GMPGE 685
Query: 201 RGSAG-ASSRG-RGALGAWARHSAVRLDSGRGWRGK--TPGAGGA-AERGAQLAKCPASK 255
RG+AG A +G RG +G A D GRG G PG GA E+G PA
Sbjct: 686 RGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGS 745
Query: 256 AF-----GDQSLRGPLAGAQ-SRPDLLPASPLSRLGEEGKGAPKYHS-LPSPYG 302
A G++ GP A + P P ++ GE+G+ K + P P G
Sbjct: 746 AGARGAPGERGETGPPGPAGFAGPPGADGQPGAK-GEQGEAGQKGDAGAPGPQG 798
Score = 44.3 bits (103), Expect = 1e-04
Identities = 57/219 (26%), Positives = 72/219 (32%), Gaps = 30/219 (13%)
Query: 93 GPPGRGGPGQVAAAAPA----PPASWAPPQPGRRPTCPGCCRGAAS----GAPRWVRTWA 144
GP G PG A P P + P P PG + + G P +
Sbjct: 295 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAG 354
Query: 145 AAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSA 204
A +A PG P+ P A P GP G E G ++ G A +G+
Sbjct: 355 APGIAGAPGFPGPRGPPGPQGATGPLGPKGQTG-EPGIAGFKGEQGPKGEPGPAGPQGAP 413
Query: 205 GASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAF-GDQSLR 263
G + G GA RG G G ERGA P ++ F G L
Sbjct: 414 GPAGE-EGKRGA------------RGEPGGVGPIGPPGERGA-----PGNRGFPGQDGLA 455
Query: 264 GPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHSLPSPYG 302
GP R A P G+ G+ P LP G
Sbjct: 456 GPKGAPGERGPSGLAGPKGANGDPGR--PGEPGLPGARG 492
Score = 44.3 bits (103), Expect = 1e-04
Identities = 61/229 (26%), Positives = 76/229 (33%), Gaps = 52/229 (22%)
Query: 93 GPPG-------RGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAA 145
GPPG RG PG+ P PA +A P PG A G P
Sbjct: 738 GPPGPAGSAGARGAPGERGETGPPGPAGFAGP-PG------------ADGQP-------- 776
Query: 146 AAVAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAG 205
G + A A P GPS A GP+ G + G A G G
Sbjct: 777 ----GAKGEQGEAGQKGDAGAPGPQGPSGAPGPQ-GPTGVTGPKGARGAQGPPGATGFPG 831
Query: 206 ASSR-----GRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQ 260
A+ R G G D +G RG + G A E G Q P + G+
Sbjct: 832 AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEK-GEP 890
Query: 261 SLRGPLAGAQSRPDLLPASPLSRLGEEG-------KGAPKYHSLPSPYG 302
GP +GA+ P P G+ G +G + LP P G
Sbjct: 891 GDDGP-SGAEG-----PPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSG 933
Score = 43.5 bits (101), Expect = 2e-04
Identities = 65/216 (30%), Positives = 76/216 (35%), Gaps = 29/216 (13%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGP 152
GPPG GP + A P +P G P GAA T A A P
Sbjct: 948 GPPGPVGPPGLTGPAGEPGREGSPGADG-----PPGRDGAAGVKGDRGETGAVGA----P 998
Query: 153 GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASSRGRG 212
G P P PAGP+ G +RG A + SG A ARG G RG
Sbjct: 999 GAPGPPGSPG------PAGPTGKQG-DRGE---AGAQGPMGPSGPAGARGIQGPQG-PRG 1047
Query: 213 ALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRGPLA----- 267
G L RG+ G G G Q A PA + G + GP+
Sbjct: 1048 DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPS-GPRGPPGPVGPSGKD 1106
Query: 268 GAQSRPDLL-PASPLSRLGEEGKGAPKYHSLPSPYG 302
GA P + P P R GE G P + P P G
Sbjct: 1107 GANGIPGPIGPPGPRGRSGETGPAGPPGN--PGPPG 1140
Score = 34.7 bits (78), Expect = 0.11
Identities = 62/223 (27%), Positives = 76/223 (34%), Gaps = 44/223 (19%)
Query: 92 DGPPGRGGPGQVAAAAPAPPASWAPP----QPGRRPTCPGCCRGAAS-GAPRWVRTWAAA 146
DGP G GP PP + PP PG RGAA P+ R
Sbjct: 659 DGPKGASGPA-------GPPGAQGPPGLQGMPGE--------RGAAGIAGPKGDR----- 698
Query: 147 AVAAGPGRSAPQREPRAAWAACPAGPSSAAGP-----ERGHVSCAADEPGTERSGAAAAR 201
G P+ P GP GP E+G V PG +G+A AR
Sbjct: 699 ---GDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVG----PPGP--AGSAGAR 749
Query: 202 GSAGASSRGR-GALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQ 260
G+ G RG G G D G +G+ AG + GA + P S A G Q
Sbjct: 750 GAPG--ERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGP-SGAPGPQ 806
Query: 261 SLRGPLAGAQSRPDLLPASPLSRLGEEGK-GAPKYHSLPSPYG 302
G +R P G G+ G P + P P G
Sbjct: 807 GPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPG 849
Score = 32.7 bits (73), Expect = 0.41
Identities = 59/225 (26%), Positives = 70/225 (31%), Gaps = 38/225 (16%)
Query: 93 GPPG-RGGPGQVAAAAPAPPASWAPP-QPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAA 150
GP G RG PG A AP P P +PG PG P
Sbjct: 135 GPMGPRGPPGP--AGAPGPQGFQGNPGEPGE----PGVSGPMGPRGP--------PGPPG 180
Query: 151 GPGRSAPQREPRAAWAACPAGPSSAAG--------PERGHVSCAADEPGTERSGAAAARG 202
PG +P A P GP A G +GH + +GA +G
Sbjct: 181 KPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKG 240
Query: 203 SAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSL 262
+G+ G+ G G RG+T AG A RG PA
Sbjct: 241 ESGSPGEN-GSPGPMGPRGLP------GERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA 293
Query: 263 RGP-LAGAQSRPDLLPASPLSRLGEEG----KGAPKYHSLPSPYG 302
GP GA A P G EG +G P P P G
Sbjct: 294 GGPGFPGAPGAKG--EAGPTGARGPEGAQGPRGEPGTPGSPGPAG 336
Score = 31.6 bits (70), Expect = 0.91
Identities = 65/216 (30%), Positives = 75/216 (34%), Gaps = 30/216 (13%)
Query: 93 GPPGRGGP-GQVA-AAAPAPPASWAPPQPGRRPTCPGCC----RGAASGAPRWVRTWAAA 146
G PG GP G+V + AP PP P PG A+G P
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKA---GEK 551
Query: 147 AVAAGPG-RSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAG 205
+ PG R P ++ AA P GP+ AG ERG PG SG G G
Sbjct: 552 GLPGAPGLRGLPGKDGETG-AAGPPGPAGPAG-ERGEQGA----PGP--SGFQGLPGPPG 603
Query: 206 ASSRG--RGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQ----LAKCPASKAFGD 259
G G G A L RG RG G +G Q L P + G
Sbjct: 604 PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTD--GP 661
Query: 260 QSLRGPLA--GAQSRPDLLPASPLSRLGEEGKGAPK 293
+ GP GAQ P L P R G G PK
Sbjct: 662 KGASGPAGPPGAQGPPG-LQGMPGER-GAAGIAGPK 695
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 46.2 bits (108), Expect = 4e-05
Identities = 65/220 (29%), Positives = 78/220 (35%), Gaps = 33/220 (15%)
Query: 88 HHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAA 147
H+ +DG G+ G V AP + P Q G R PG + P R +
Sbjct: 182 HNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGL-PGERGRVGAPGPAGARGSDGSV 240
Query: 148 VAAGP-------------GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTER 194
GP G P+ E A A PAGP AGP RG V PG
Sbjct: 241 GPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGP---AGP-RGEVGL----PGL-- 290
Query: 195 SGAAAARGSAGAS--SRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCP 252
SG G+ GA+ + +GA G A L RG G AG RG P
Sbjct: 291 SGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGP 350
Query: 253 ASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAP 292
A G+ +G A P P GEEGK P
Sbjct: 351 AGSK-GESGNKGEPGSAG------PQGPPGPSGEEGKRGP 383
Score = 45.8 bits (107), Expect = 5e-05
Identities = 67/218 (30%), Positives = 77/218 (35%), Gaps = 34/218 (15%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRR----------PTCPGCCRG--AASGAPRWV 140
GPPG PG P+ PA +PG R P P RG SGA
Sbjct: 547 GPPGP--PGFQGLPGPSGPAGEVG-KPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPT 603
Query: 141 RTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAG--PERGHVSCAADEPGTE-RSGA 197
+ + PG + EP A AGPS +G ERG AA PG + G
Sbjct: 604 GPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERG----AAGIPGGKGEKGE 659
Query: 198 AAARGSAGASSR--GRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASK 255
RG G R RGA GA RG G AG A RG+ +
Sbjct: 660 PGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGP 719
Query: 256 AFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPK 293
A G GP AGA +P GE G PK
Sbjct: 720 A-GPNGFAGP-AGAAGQP--------GAKGERGAKGPK 747
Score = 45.1 bits (105), Expect = 8e-05
Identities = 63/223 (28%), Positives = 76/223 (34%), Gaps = 19/223 (8%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAA------ 146
GP G G AA P +PG R R A GAP V A
Sbjct: 634 GPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDR 693
Query: 147 --AVAAGP-GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTE-RSGAAAARG 202
A AAGP G + P+ P PAGP+ AGP + AA +PG + GA +G
Sbjct: 694 GEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGP-----AGAAGQPGAKGERGAKGPKG 748
Query: 203 SAG--ASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQ 260
G + GA G + RG G PG G + S G
Sbjct: 749 ENGVVGPTGPVGAAGPAGPNGPPGPAGSRG-DGGPPGMTGFPGAAGRTGPPGPSGISGPP 807
Query: 261 SLRGPLAGAQSRPDLLPASPLSRLGEEGK-GAPKYHSLPSPYG 302
GP R P+ R GE G G P + P G
Sbjct: 808 GPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSG 850
Score = 43.5 bits (101), Expect = 2e-04
Identities = 73/227 (32%), Positives = 81/227 (35%), Gaps = 40/227 (17%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASG-APRWV---RTWAAAAV 148
GPPGR G P PP PP G +G G P + R AA
Sbjct: 48 GPPGRDGEDG-PTGPPGPPGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAG 106
Query: 149 AAGP-GRSAPQREPRAAWAACPAGPSSAAGP-----ERGHVSCAADEPGTERS--GAAAA 200
A GP G P EP PAG AGP E GH PG ER G A
Sbjct: 107 APGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPG-KPGRPG-ERGVVGPQGA 164
Query: 201 RGSAGASS-------RGRGAL-GAWARHSA--VRLDSGRGWRGKTPGAGGA----AERGA 246
RG G RG L G + A V+ + G TPG GA ERG
Sbjct: 165 RGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGR 224
Query: 247 QLAKCPASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEG-KGAP 292
A PA D S+ GP+ PA P+ G G GAP
Sbjct: 225 VGAPGPAGARGSDGSV-GPVG---------PAGPIGSAGPPGFPGAP 261
Score = 42.7 bits (99), Expect = 4e-04
Identities = 65/238 (27%), Positives = 79/238 (33%), Gaps = 35/238 (14%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAG- 151
G PG G AA P + AP PG R PG A + R + A + G
Sbjct: 298 GNPGANGLTGAKGAAGLPGVAGAPGLPGPRGI-PGPVGAAGATGARGLVGEPGPAGSKGE 356
Query: 152 ------PGRSAPQREPRAAWAACPAGPSSAAGPE--------RGHVSCAADEPGTERSGA 197
PG + PQ P + GP+ AG RG R+G
Sbjct: 357 SGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGV 416
Query: 198 AAARGSAGASSRG--RGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASK 255
GS GAS RG G R L RG G G A + G P
Sbjct: 417 MGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEG------PVGL 470
Query: 256 AFGDQSLRGPL--AGAQSRPDLLP-ASPLSRLGEEGKGAPKYHS-------LPSPYGN 303
G GP+ AGA+ P + P G+ GK K H+ P P GN
Sbjct: 471 P-GIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGN 527
Score = 40.8 bits (94), Expect = 0.001
Identities = 63/223 (28%), Positives = 76/223 (34%), Gaps = 28/223 (12%)
Query: 93 GPPGRGG-PGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAG 151
GPPG G PG P P+ + P P RG RT AV G
Sbjct: 781 GPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAV--G 838
Query: 152 PGRSAPQREPRAAWAACPAGPSSAAGP-----------------ERG--HVSCAADEPGT 192
P A ++ P A AGP GP ERG V+ A EPG
Sbjct: 839 PPGFAGEKGPSGE--AGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGP 896
Query: 193 ER-SGAAAARGSAGA--SSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLA 249
+G ARG GA S GA G R D G G+ PG G +
Sbjct: 897 LGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQ-PGHKGERGYPGNIG 955
Query: 250 KCPASKAFGDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAP 292
A+ A G GP +R + P+ P+ G G P
Sbjct: 956 PVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGP 998
Score = 28.5 bits (62), Expect = 7.7
Identities = 35/120 (29%), Positives = 43/120 (35%), Gaps = 12/120 (10%)
Query: 93 GPPGR-GGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRG----AASGAPRWVRTWAAAA 147
GP G+ G G+ + P PA P R P+ P RG PR +
Sbjct: 970 GPAGKHGNRGETGPSGPVGPAGAVGP---RGPSGPQGIRGDKGEPGEKGPRGLPGLKGHN 1026
Query: 148 VAAG-PGRSAPQREPRAAWAACPAGPSSAAGPE-RGHVSCAADEPGTERSGAAAARGSAG 205
G PG + + A + PAGP AGP PGT G A RG G
Sbjct: 1027 GLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGT--VGPAGIRGPQG 1084
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 45.4 bits (106), Expect = 6e-05
Identities = 66/248 (26%), Positives = 78/248 (31%), Gaps = 48/248 (19%)
Query: 93 GPPGRGG-PGQVAAAAPAPP--------------ASWAPPQPGRR--------------P 123
GPPG G PG+ A P P A P PGR P
Sbjct: 1269 GPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSP 1328
Query: 124 TCPGCCRGAASGAPRWVR--TWAAAAVAAGPGRSAPQR--EPRAAWAACPAGPSSAAGPE 179
PG PR + A V G G P R +P + P GP GP
Sbjct: 1329 GLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGP- 1387
Query: 180 RGHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAG 239
RG PGT G RG G G G + A L G +G G
Sbjct: 1388 RGPPGL----PGTAMKGDKGDRGERGPPGPGEGGI-APGEPGLPGLPGSPGPQGPVGPPG 1442
Query: 240 GAAERGAQLAKCPASKAF----GDQSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPKYH 295
E+G P G+Q RGP + D PL GE+G+ P
Sbjct: 1443 KKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGP--- 1499
Query: 296 SLPSPYGN 303
P P G+
Sbjct: 1500 --PGPAGS 1505
Score = 38.1 bits (87), Expect = 0.010
Identities = 68/232 (29%), Positives = 79/232 (34%), Gaps = 41/232 (17%)
Query: 93 GPPGR---GGPGQVAAAAPAPPASWAPPQPGRRPTCPGC--------CRG--AASGAPRW 139
GPPGR GPG P P P P PG RG G P
Sbjct: 1703 GPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPG- 1761
Query: 140 VRTWAAAAVAAGP----GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERS 195
VR A GP GRS +P AA P+GP+ AAG A +PG R
Sbjct: 1762 VRGPAGEKGDRGPPGLDGRSGLDGKPGAAG---PSGPNGAAG--------KAGDPG--RD 1808
Query: 196 GAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASK 255
G RG G G G D G GK G E G + K S
Sbjct: 1809 GLPGLRGEQGLP----GPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEK-GDSG 1863
Query: 256 AFGDQSLRGPLAGAQSRPDLL----PASPLSRLGEEGKGAPKYHSLPSPYGN 303
A G + GP G + P +L P +G G+G P P G+
Sbjct: 1864 ASGREGRDGP-KGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGD 1914
Score = 38.1 bits (87), Expect = 0.010
Identities = 60/228 (26%), Positives = 69/228 (30%), Gaps = 30/228 (13%)
Query: 93 GPPGRGGPGQVAAAAPAPPA-SWAPPQPGRR--PTCPGCCRGAA-SGAPRWVRTWAAAAV 148
G PG GP +A PP S +PG+ P PG G +G P
Sbjct: 2009 GDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGE 2068
Query: 149 AAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASS 208
GR P P GP GP+ + DEPG SG G GA
Sbjct: 2069 RGEQGRDGPPGLPGTP------GPPGPPGPK-----VSVDEPGPGLSGEQGPPGLKGAKG 2117
Query: 209 R--GRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRGPL 266
G G + RG G G G + P K G Q RGP
Sbjct: 2118 EPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKP-GLQGPRGPP 2176
Query: 267 A--------GAQSRPDLL----PASPLSRLGEEGKGAPKYHSLPSPYG 302
G P L P P GE G+ P L P G
Sbjct: 2177 GPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTG 2224
Score = 32.0 bits (71), Expect = 0.69
Identities = 54/176 (30%), Positives = 60/176 (34%), Gaps = 30/176 (17%)
Query: 93 GPPG----RGGPGQVAAAAP-----APPASWAPPQPGRR-----PTCPGCCRGAAS--GA 136
GPPG +G PG P P +PG R P PG RG A G
Sbjct: 2108 GPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGE-RGMAGPEGK 2166
Query: 137 PRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAG-------PERGHV--SCAA 187
P G G P P A A P GPS G P RG + A
Sbjct: 2167 PGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAV 2226
Query: 188 DEPGTE-RSGAAAARGSAGASSR--GRGALGAWARHSAVRLDSGRGWRGKTPGAGG 240
PG SG +GS G + G GA R A D RG G PG+ G
Sbjct: 2227 GLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPG-VPGSPG 2281
Score = 28.9 bits (63), Expect = 5.9
Identities = 57/224 (25%), Positives = 70/224 (31%), Gaps = 43/224 (19%)
Query: 93 GPPGRGGPGQVAAAAP--------------APPASWAPPQPGRRPTCPGCCRGA---ASG 135
GPPG+G PG P P +PG P A AS
Sbjct: 1896 GPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASA 1955
Query: 136 APRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAGP-----ERGHVSCAADEP 190
V TW ++G P+R + GP GP ERG D P
Sbjct: 1956 LREIVETWDE---SSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGD-P 2011
Query: 191 GTERSG--AAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQL 248
G + A RG G S G G + L G G+ G ERG +
Sbjct: 2012 GPQGPPGLALGERGPPGPS----GLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKG 2067
Query: 249 AKCPASKAFGDQSLRGP--LAGAQSRPDLLPASPLSRLGEEGKG 290
+ G+Q GP L G P P P + E G G
Sbjct: 2068 ER-------GEQGRDGPPGLPGTPGPPG--PPGPKVSVDEPGPG 2102
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.4 bits (106), Expect = 6e-05
Identities = 46/121 (38%), Positives = 55/121 (45%), Gaps = 21/121 (17%)
Query: 95 PGRGGP---GQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAG 151
PG GGP G + P PA APP RP G A S AP AAAAVAAG
Sbjct: 97 PGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEG---SAGSCAP----VPAAAAVAAG 149
Query: 152 PGRSAPQREPRAAWAACPAGP---SSAAGPERGHVSCAADEPGTER-SGAAAARGSAGAS 207
P EP A A PAGP ++ AGP G PG + +G AA+ G++
Sbjct: 150 P-------EPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSA 202
Query: 208 S 208
+
Sbjct: 203 A 203
Score = 44.3 bits (103), Expect = 1e-04
Identities = 36/120 (30%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 91 VDGPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAA 150
+ PP G A AAP+PPA+ AP P P P + P A
Sbjct: 238 IQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPP---------GHPA 288
Query: 151 GPGRSAPQ-REPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASSR 209
GP +AP P AA AG + A P G + + +PG + AA A G S +
Sbjct: 289 GPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPK 348
Score = 41.2 bits (95), Expect = 0.001
Identities = 62/206 (30%), Positives = 70/206 (33%), Gaps = 23/206 (11%)
Query: 88 HHFVDGPP-GRGGPGQVAAAAPAPPASWAPPQPGR---------RPTCPGCCRGAASGAP 137
+H V G P G G G A A AP A+ PP GR RP P R P
Sbjct: 60 NHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGP 119
Query: 138 RWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSA-AGPER--GHVSCAADEPGTER 194
AA + P SA P A AA AGP A AGP + G + AA
Sbjct: 120 ----APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPG 175
Query: 195 SGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPAS 254
G G G GA SA L+S P A L P
Sbjct: 176 PGPGPGPGPGPGKPAGPGA-AQTLNGSAALLNS---HHAAAPAVSLVNNGPAALLPLPKP 231
Query: 255 KAFGDQSLRGPLAGAQSRPDLLPASP 280
A G P GA + P PA+P
Sbjct: 232 AAPGTVIQTPPFVGAAAPP--APAAP 255
Score = 36.2 bits (82), Expect = 0.037
Identities = 51/180 (28%), Positives = 67/180 (37%), Gaps = 25/180 (13%)
Query: 94 PPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPG 153
PPG P AAPA P PP + G+A AP A A A GP
Sbjct: 283 PPGH--PAGPPTAAPAVP----PPAAAQN-------GGSAGAAP------APAPAAGGPA 323
Query: 154 RSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASSRGRGA 213
+ Q P AA AA PA A P+R A P + A+ +A + G
Sbjct: 324 GVSGQPGPGAA-AAAPAPGVKAESPKR---VVQAAPPAAQTLAASGPASTAASMVIGPTM 379
Query: 214 LGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRGPLAGAQSRP 273
GA +AV + G GA GA + L++ P + G ++ P A P
Sbjct: 380 QGALPSPAAVPPPAPGTPTGLPKGAAGAVTQ--SLSRTPTATTSGIRATLTPTVLAPRLP 437
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 45.1 bits (105), Expect = 8e-05
Identities = 43/135 (31%), Positives = 52/135 (38%), Gaps = 12/135 (8%)
Query: 118 QPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAG 177
QP + RG A G R R A P R P AA C P + G
Sbjct: 121 QPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLC--APDANCG 178
Query: 178 PERGHVSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPG 237
P G AA G ++G AA +A A++ A A A+ S D+G G G
Sbjct: 179 PPDGSQPAAAG-AGASKAGNPAAAAAAAAAAVAAAAAAAAAKPS----DTGGGGSG---- 229
Query: 238 AGGAAERGAQLAKCP 252
GGA GAQ K P
Sbjct: 230 -GGAGSPGAQGTKYP 243
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 44.7 bits (104), Expect = 1e-04
Identities = 48/162 (29%), Positives = 59/162 (36%), Gaps = 36/162 (22%)
Query: 94 PPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPG-----CCRGAASGAPRWVRTWAAAAV 148
P GR P A P ++WA P GRRP P RG+A APR R W
Sbjct: 170 PVGRA-PRPSAQPQSDPGSAWAGPWGGRRPGPPSYEAHLLLRGSAGTAPR--RRW----- 221
Query: 149 AAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASS 208
R P GP G +RG + + P + A AR G +
Sbjct: 222 ---------DRPPPYVAPPSYEGPHRTLGTKRGPGN--SQVPTSSAPAATPARTDGGRTK 270
Query: 209 RG------RGALGAWARHSAVRLDSGRGWRGKTPGAGGAAER 244
+ R LGAW L G+G G +PG G A R
Sbjct: 271 KRLDPRIYRDVLGAWG------LRQGQGLLGGSPGCGAARAR 306
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 44.3 bits (103), Expect = 1e-04
Identities = 71/224 (31%), Positives = 83/224 (37%), Gaps = 57/224 (25%)
Query: 94 PPGRGGP--GQVAAAAPAPPASWAP-PQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAA 150
PP + G G+ + P P + AP PQPG PT P P VR
Sbjct: 183 PPRQEGSFGGRPKSQPPLPQETAAPAPQPG--PTAP----------PARVRE-------- 222
Query: 151 GPGRS-APQREPRAAWAACPAGPSSAAGP---ERGHVSCAADEPGTERSG---AAAARGS 203
PGR+ REPR A A P A GP R S AA PG G AAA R
Sbjct: 223 -PGRAEGASREPRLRSRA--ARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAP 279
Query: 204 AGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKC--------PASK 255
G R GALG A S R D+ W G G A G + C PA+
Sbjct: 280 GGGGGRNPGALGRAAPPSRARQDA---W-----GLSGCATVGLRRGDCDRAGSSQPPATS 331
Query: 256 AFGD--------QSLRGPLAGAQSRPDLLPASPLSRLGEEGKGA 291
G+ + G G + PASP R +E GA
Sbjct: 332 GNGERCRFCRRRRRRGGGGEGEGTHATHGPASPPGRRHDEEVGA 375
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 44.3 bits (103), Expect = 1e-04
Identities = 47/157 (29%), Positives = 60/157 (38%), Gaps = 13/157 (8%)
Query: 105 AAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAA 164
A P PP + R G GA GA W + PGR+ P +
Sbjct: 94 AFLPRPPGPLQTRRYCRHQGRQGSGLGAGPGAGTWAPAPPGVSKPRCPGRARPGEGQQQV 153
Query: 165 WAACPAGPSSAAGPERGHVSCAADEPGTE--RSGAAAARGSAGASSRGRGALGAWARHSA 222
A P + A R + A PG R+G AAA SAG + GA+G+
Sbjct: 154 TTARPPAINRGARQPRAGAAAAGRGPGAGAWRTGEAAA--SAGPAVGEGGAMGS------ 205
Query: 223 VRLDSGRGW-RGKTPGAGGAAE-RGAQLAKCPASKAF 257
R RGW G GAGG E G PAS+++
Sbjct: 206 -RRAPSRGWGAGGRSGAGGDGEDDGPVWIPSPASRSY 241
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 43.9 bits (102), Expect = 2e-04
Identities = 38/107 (35%), Positives = 44/107 (41%), Gaps = 19/107 (17%)
Query: 96 GRGGPGQVAAAA--------PAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAA 147
G GG G AAAA P PPA+ APP P P P ASG P A
Sbjct: 54 GAGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPP------APPG 107
Query: 148 VAAGPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTER 194
+AAGPG + P A AG S+AA G + E +R
Sbjct: 108 LAAGPGPAGGAPTP-----ALVAGSSAAAPFPHGDSALNEQEKELQR 149
Score = 29.6 bits (65), Expect = 3.4
Identities = 34/116 (29%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 94 PPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAA-SGAPRWVRTWAAAAVAAGP 152
PP Q +P PPA+ AP P P G++ +G+P AA
Sbjct: 7 PPPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGLGAAAAA 66
Query: 153 GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTER-SGAAAARGSAGAS 207
P P A AA P P P S AA G G AA G AG +
Sbjct: 67 LLLHPPPPPPPATAAPPPPPPPPPPP----ASAAAPASGPPAPPGLAAGPGPAGGA 118
>gi|239745480 PREDICTED: hypothetical protein XP_002343504 [Homo
sapiens]
Length = 243
Score = 43.9 bits (102), Expect = 2e-04
Identities = 60/189 (31%), Positives = 70/189 (37%), Gaps = 31/189 (16%)
Query: 111 PASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPA 170
P S AP P R P G APR +R WA AA Q P AA AA P
Sbjct: 66 PFSGAPSSPSRHP-------GQCPWAPRLLRAWATRVSAA---LLTAQFTPGAA-AAGPQ 114
Query: 171 GPSSA-----AGPERGHVSCAADE--PGTERS--------GAAAARGSAGASSRGRGALG 215
GP S A R A + P RS GA A GS GR L
Sbjct: 115 GPGSTWRRLLASRFRCSKKSAVQQLTPLLLRSPQVAIFLAGAGRALGSGRPPCSGRRRLS 174
Query: 216 AWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRGPLAGAQSRPDL 275
A S +P AGGA ++ A+ K PA G + RG +R L
Sbjct: 175 VPAARGGEGATSRHWAPAASPAAGGAGKKDARKRKAPA----GPRVARGCAPWFLAREQL 230
Query: 276 LPASPLSRL 284
L PL++L
Sbjct: 231 L-GPPLAKL 238
>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
sapiens]
Length = 271
Score = 43.5 bits (101), Expect = 2e-04
Identities = 63/223 (28%), Positives = 81/223 (36%), Gaps = 26/223 (11%)
Query: 94 PPGRGGPGQVAAAAPAP---PASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAA 150
P G G G+ P P P++ PG + G CR P V A
Sbjct: 52 PGGSGSRGE----GPTPSLKPSAQCVRSPGVPRSLGGLCRAPDPALPVSVAVPPCPA-CR 106
Query: 151 GP---GRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGAS 207
GP RS P+R R PA PS GP R SC PG +
Sbjct: 107 GPQSISRSRPRRAVRPRPGPWPAAPSR--GPVR---SCRGPRPGRALGSLPLVLPAGSCG 161
Query: 208 SRGRGALGAWARHSAVRLD-SGRGWRGKTPG------AGGAAERGAQLAKCPASKAFGDQ 260
S +LG AR SA+ + SG G P A + +G+ AK P +A D
Sbjct: 162 SCQEDSLGNQARPSALEIGASGVGLGSPAPSNRRNRYAPPESPKGSPSAKPP--RACSDT 219
Query: 261 -SLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHSLPSPYG 302
S R P + ++ P P P L + GAP +L G
Sbjct: 220 FSARQPASTPKALPGGCPGDPELGLPPKRAGAPSAAALSCEQG 262
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 43.5 bits (101), Expect = 2e-04
Identities = 66/228 (28%), Positives = 84/228 (36%), Gaps = 47/228 (20%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGA--PRWVRTWAAAAVAA 150
G RGG Q AAAA +P RR + AA+G+ PRW +AAA +
Sbjct: 97 GAENRGGGEQKAAAAGTKSLGGRGRKPRRRGQ-----KAAATGSKKPRWRAQKSAAAGSK 151
Query: 151 GPGRSAPQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAARGSAGASSRG 210
G A + AA AG S G + + A + RSG R GA SRG
Sbjct: 152 NRGAGAQK-------AAAAAGVKSQGGEKPQKAAAAGAK---SRSGKKPRR--RGAKSRG 199
Query: 211 RGALGAWARHSAVRLDSGRGWRGKT-----PGAGGA-------------AERGAQLA--- 249
R + R RG R K P AGGA RG + A
Sbjct: 200 DEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGG 259
Query: 250 --KCPASKAFGDQSLR-----GPLAGAQSRPDLLPASPLSRLGEEGKG 290
+ S+ GD+ LR LAGA+ R + G G+G
Sbjct: 260 KSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGRG 307
Score = 43.5 bits (101), Expect = 2e-04
Identities = 39/127 (30%), Positives = 52/127 (40%), Gaps = 7/127 (5%)
Query: 130 RGAASGAPRWVRTWAA---AAVAAGPGRSAPQREP---RAAWAACPAGPSSAAGPERGHV 183
RG+ PRW + AA ++ AA G+ A R+ R A + G ++A G
Sbjct: 654 RGSGGKQPRWQKPAAAGSESSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINPWQR 713
Query: 184 SCAADEPGTERSGAAA-ARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAA 242
G R G A +RGS GA SRG G + + A S G K GGA
Sbjct: 714 RGKKPRLGKSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAK 773
Query: 243 ERGAQLA 249
R + A
Sbjct: 774 SRSGEKA 780
Score = 43.1 bits (100), Expect = 3e-04
Identities = 65/242 (26%), Positives = 81/242 (33%), Gaps = 46/242 (19%)
Query: 88 HHFVDGPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAA 147
H + GR GPG AA A R P AA A + AA
Sbjct: 6 HRQCNQAAGRAGPGAPLGAALA-----------RTPV-----ELAAESAAPALSAAAAGV 49
Query: 148 VAAGPGRSAPQREPRAAW---AACPAGPSSAAGPE-RGHVSCAADEPGTERSGA----AA 199
G G +R+ AA A + AG E R H AA G E G AA
Sbjct: 50 KILGSGDKKLRRQKAAAGGKKARLRGQKGAVAGKEARQHWQKAAGAGGAENRGGGEQKAA 109
Query: 200 ARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAF-- 257
A G+ RGR + +A R WR + A G+ RGA K A+
Sbjct: 110 AAGTKSLGGRGRKPRRRGQKAAATGSKKPR-WRAQKSAAAGSKNRGAGAQKAAAAAGVKS 168
Query: 258 --GDQSLRGPLAGAQSRPDLLP-----------------ASPLSRLGEEGKGAPKYHSLP 298
G++ + AGA+SR P SR G+ G K H P
Sbjct: 169 QGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRP 228
Query: 299 SP 300
P
Sbjct: 229 KP 230
Score = 35.0 bits (79), Expect = 0.082
Identities = 51/203 (25%), Positives = 70/203 (34%), Gaps = 32/203 (15%)
Query: 97 RGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRS- 155
RGG GQ AA + + G++P A + A G GR
Sbjct: 342 RGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKK 401
Query: 156 ------------APQREPRAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGAAAAR-- 201
AP +PR + P A RG S + R G A +
Sbjct: 402 PRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKA 461
Query: 202 GSAGASSRG--------RGALGAWARHSAVRLDSGRG-WRGKTPGAGGAAERGAQLAKCP 252
AGA SRG A G +R ++ SG+ WR G AE + A
Sbjct: 462 AEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKNLWR-----RGQKAEAAGEKATAA 516
Query: 253 ASKAFGDQSLR---GPLAGAQSR 272
+K+ G + R +AGA+SR
Sbjct: 517 GAKSRGRKQPRRQKPAVAGAKSR 539
Score = 31.2 bits (69), Expect = 1.2
Identities = 65/234 (27%), Positives = 76/234 (32%), Gaps = 67/234 (28%)
Query: 130 RGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRA--------------AW--AACPAGPS 173
RG PR AAAA G G P + A AW A G
Sbjct: 568 RGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDGGKKAWRQKAAGTGAK 627
Query: 174 SAAGP-ERGHVSCAADE------------------------PGTERSGAAAARGSA---- 204
S P RG AA E G+E S AAA A
Sbjct: 628 SRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQPRWQKPAAAGSESSAAAAVGQEAEARK 687
Query: 205 -----GASSRGRGALGA------WARH-SAVRLDSGRGWRG-KTPGAGGAAERGAQLA-- 249
A SRG G A W R RL RG G K+ G+GGA RG+ A
Sbjct: 688 KPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSRGGGGAKSRGSGGAKSRGSGGAKS 747
Query: 250 ----KCPASKAFGD---QSLRGPLAGAQSRPDLLPASPLSRLGEEGKGAPKYHS 296
K ASK+ G + RG A ++S + A GK P+ S
Sbjct: 748 RSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQKAAAAGGKKPPRVKS 801
>gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo
sapiens]
Length = 351
Score = 43.5 bits (101), Expect = 2e-04
Identities = 51/181 (28%), Positives = 65/181 (35%), Gaps = 35/181 (19%)
Query: 144 AAAAVAAGPGRSAPQREP-------RAAWAACPAGPSSAAGP----ERGHVSCAAD-EPG 191
A A A PGR +EP R+A CP +S AG R D +P
Sbjct: 87 ATVAKAGSPGRGRLGKEPRRRESWTRSAPRRCPYQDASRAGSRVCRSRPQNRGGGDKKPR 146
Query: 192 TERSGAAAARGSAGASSRGRGALGAWAR--------------------HSAVRLDSGRGW 231
AA +RG G RG+ A GA A+ A S G
Sbjct: 147 RRGQKAAKSRGGGGKKPRGQKAAGAGAKKHRKPRRRGERAAAAGGKKLQKAAAAKSRGGG 206
Query: 232 RGKTPGAGGAAERGAQLAKCPASKAFGDQSL---RGPLAGAQSRPDLLPASPLSRLGEEG 288
KT AGG R + K S+ GD+ L + L G +SR D P + E G
Sbjct: 207 GKKTAAAGGKKPRRRRGQKAAKSRGGGDKKLERQKAALTGVKSRGDKKPLRGGKKQRERG 266
Query: 289 K 289
+
Sbjct: 267 Q 267
Score = 31.2 bits (69), Expect = 1.2
Identities = 46/174 (26%), Positives = 61/174 (35%), Gaps = 26/174 (14%)
Query: 118 QPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQREPRAAWAACPAGPSSAAG 177
+P RR RG PR + AA A R +R RAA A +AA
Sbjct: 144 KPRRRGQKAAKSRGGGGKKPRGQK---AAGAGAKKHRKPRRRGERAAAAGGKKLQKAAAA 200
Query: 178 PERG----HVSCAADEPGTERSG--AAAARGSA------------GASSRG-----RGAL 214
RG + A + R G AA +RG G SRG RG
Sbjct: 201 KSRGGGGKKTAAAGGKKPRRRRGQKAAKSRGGGDKKLERQKAALTGVKSRGDKKPLRGGK 260
Query: 215 GAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQSLRGPLAG 268
R + G G + + A GA RG + K ++A Q+ R + G
Sbjct: 261 KQRERGQNTKSRGGGGEKPQKAAAAGAKSRGGRGEKPQKAEAGQGQNRRNEVGG 314
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 43.5 bits (101), Expect = 2e-04
Identities = 45/126 (35%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 130 RGAASGAPRWVRTWAAAAVA---AGPGRSAPQREPRAAWAAC---PAGPSSAAGPE-RGH 182
+G G R + AAAA A A G S + P AA + A S AGP H
Sbjct: 125 QGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHH 184
Query: 183 VSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAA 242
AA +GA A GSA AS+ G G G SA G G G G GGAA
Sbjct: 185 HHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASA----GGGGGGGGGGGGGGAA 240
Query: 243 ERGAQL 248
G L
Sbjct: 241 GAGGAL 246
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 43.5 bits (101), Expect = 2e-04
Identities = 45/126 (35%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 130 RGAASGAPRWVRTWAAAAVA---AGPGRSAPQREPRAAWAAC---PAGPSSAAGPE-RGH 182
+G G R + AAAA A A G S + P AA + A S AGP H
Sbjct: 125 QGGFDGYARGAQQLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHH 184
Query: 183 VSCAADEPGTERSGAAAARGSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAA 242
AA +GA A GSA AS+ G G G SA G G G G GGAA
Sbjct: 185 HHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASA----GGGGGGGGGGGGGGAA 240
Query: 243 ERGAQL 248
G L
Sbjct: 241 GAGGAL 246
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 43.5 bits (101), Expect = 2e-04
Identities = 60/198 (30%), Positives = 73/198 (36%), Gaps = 34/198 (17%)
Query: 93 GPPGRGGPGQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGP 152
G R P + A PAP + APP PG P + + AAA AA
Sbjct: 23 GLGSRREPRSLPAGGPAPRRT-APPPPGHASAGPAAMSSHIAKSESKTSLLKAAAAAASG 81
Query: 153 GRSAPQREP--------RAAWAACPAGPSSAAGPERGHVSCAADEPGTERSGA-AAARGS 203
G AP+ P R +CPA P S+ P C P GA + R
Sbjct: 82 GSRAPRHGPARDPGLPSRRLPGSCPATPQSSGDPSSRRPLC---RPAPREEGARGSQRVL 138
Query: 204 AGASSRGRGALGAWARHSAVR--LDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQS 261
A R R AL A A + L RG G+ ERG S A G
Sbjct: 139 PQAHCRPREALPAAASRPSPSSPLPPARGRDGE--------ERG-------LSPALG--- 180
Query: 262 LRGPLAGAQSRPDLLPAS 279
LRG L A+ R D +PA+
Sbjct: 181 LRGSLR-ARGRGDSVPAA 197
>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
Length = 426
Score = 43.1 bits (100), Expect = 3e-04
Identities = 37/117 (31%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 101 GQVAAAAPAPPASWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAGPGRSAPQRE 160
G + AA P PP+ A P +RP AA AP A G++AP+RE
Sbjct: 106 GLMGAAPPGPPSPSAADTPAKRPL-------AAPSAP--------TVAAPAHGKAAPRRE 150
Query: 161 PRAAWAACPAGPSSAAG--PERGHVSCAADEPGTERSGAAAARGSAGASSRGRGALG 215
A AA S A HV A+ G E + AA G AG G G
Sbjct: 151 ASQAAAAASLQSRSLAALFDSLRHVPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAG 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,310,893
Number of Sequences: 37866
Number of extensions: 937827
Number of successful extensions: 11176
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 1187
Number of HSP's that attempted gapping in prelim test: 8021
Number of HSP's gapped (non-prelim): 3563
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.