Guide to the Human Genome
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Name: LOC100288583 Sequence: fasta or formatted (243aa) NCBI GI: 239745480
Description:

PREDICTED: hypothetical protein XP_002343504

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         38           4
 C cysteine            2.5          6           2
 D aspartate           1.6          4           1
 E glutamate           1.6          4           1
 F phenylalanine       2.9          7           1
 G glycine            12.3         30           4
 H histidine           2.1          5           1
 I isoleucine          0.8          2           1
 K lysine              3.7          9           2
 L leucine            10.3         25           3
 M methionine          0.4          1           1
 N asparagine          0.0          0           0
 P proline            12.3         30           2
 Q glutamine           3.3          8           2
 R arginine            8.6         21           3
 S serine             10.3         25           2
 T threonine           3.7          9           1
 V valine              4.9         12           3
 W tryptophan          2.9          7           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343504 
LOC100289316          0.040   PREDICTED: hypothetical protein 
LOC100289316          0.040   PREDICTED: hypothetical protein XP_002343619 
LOC100132345          0.031   PREDICTED: hypothetical protein 
KIF26A                0.031   kinesin family member 26A 
FBF1                  0.031   Fas (TNFRSF6) binding factor 1 
LOC100290946          0.029   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.029   PREDICTED: hypothetical protein XP_002344246 
GAS2L1                0.029   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.029   growth arrest-specific 2 like 1 isoform a 
LOC100130360          0.027   PREDICTED: hypothetical protein 
CIC                   0.027   capicua homolog 
OTUD1                 0.025   OTU domain containing 1 
LOC100288928          0.025   PREDICTED: hypothetical protein 
LOC100288928          0.025   PREDICTED: hypothetical protein XP_002342353 
CCDC88C               0.025   DVL-binding protein DAPLE 
DACT3                 0.025   thymus expressed gene 3-like 
C17orf65              0.023   hypothetical protein LOC339201 
WNK4                  0.023   WNK lysine deficient protein kinase 4 
LOC100294448          0.023   PREDICTED: hypothetical protein 
ZNF469                0.023   zinc finger protein 469 
LOC100290372          0.021   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.021   PREDICTED: hypothetical protein XP_002342652 
DDN                   0.021   dendrin 
LOC645685             0.021   PREDICTED: hypothetical protein 
BHLHA9                0.021   PREDICTED: basic helix-loop-helix family, member a9...
LOC100133636          0.021   PREDICTED: similar to hCG1806822 
BHLHA9                0.021   PREDICTED: basic helix-loop-helix family, member a9...
SHROOM1               0.021   shroom family member 1 
FGF2                  0.019   fibroblast growth factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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