Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239745846
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745846 PREDICTED: hypothetical protein XP_002343564 [Homo
sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756847 PREDICTED: hypothetical protein [Homo sapiens] 177 1e-45
gi|239751347 PREDICTED: hypothetical protein XP_002347811 [Homo ... 177 1e-45
gi|239745846 PREDICTED: hypothetical protein XP_002343564 [Homo ... 177 1e-45
gi|239752423 PREDICTED: hypothetical protein [Homo sapiens] 31 0.18
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 31 0.18
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 31 0.18
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 31 0.18
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 31 0.18
gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2... 31 0.24
gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1... 31 0.24
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 30 0.32
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 30 0.32
gi|21700763 hematological and neurological expressed 1-like [Hom... 30 0.32
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ... 30 0.41
gi|130977756 transmembrane anterior posterior transformation 1 [... 30 0.41
gi|51479192 ring finger protein 1 [Homo sapiens] 30 0.41
gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo s... 30 0.41
gi|169171483 PREDICTED: hypothetical protein [Homo sapiens] 30 0.54
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 30 0.54
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 30 0.54
gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens] 29 0.70
gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens] 29 0.70
gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens] 29 0.70
gi|15029506 homeobox D8 [Homo sapiens] 29 0.70
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 29 0.70
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 29 0.92
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 29 0.92
gi|24475586 ependymin related protein 1 precursor [Homo sapiens] 29 0.92
gi|153792780 additional sex combs like 2 [Homo sapiens] 29 0.92
>gi|239756847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 177 bits (450), Expect = 1e-45
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MAARPRTEGLPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPR 60
MAARPRTEGLPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPR
Sbjct: 1 MAARPRTEGLPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPR 60
Query: 61 LHQSAISPPGLRKTTTLLNYCSNH 84
LHQSAISPPGLRKTTTLLNYCSNH
Sbjct: 61 LHQSAISPPGLRKTTTLLNYCSNH 84
>gi|239751347 PREDICTED: hypothetical protein XP_002347811 [Homo
sapiens]
Length = 84
Score = 177 bits (450), Expect = 1e-45
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MAARPRTEGLPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPR 60
MAARPRTEGLPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPR
Sbjct: 1 MAARPRTEGLPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPR 60
Query: 61 LHQSAISPPGLRKTTTLLNYCSNH 84
LHQSAISPPGLRKTTTLLNYCSNH
Sbjct: 61 LHQSAISPPGLRKTTTLLNYCSNH 84
>gi|239745846 PREDICTED: hypothetical protein XP_002343564 [Homo
sapiens]
Length = 84
Score = 177 bits (450), Expect = 1e-45
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MAARPRTEGLPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPR 60
MAARPRTEGLPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPR
Sbjct: 1 MAARPRTEGLPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPR 60
Query: 61 LHQSAISPPGLRKTTTLLNYCSNH 84
LHQSAISPPGLRKTTTLLNYCSNH
Sbjct: 61 LHQSAISPPGLRKTTTLLNYCSNH 84
>gi|239752423 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 31.2 bits (69), Expect = 0.18
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 27 AAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPGLRKTTTLLNYCSNH 84
AA GGGRR G A S + DP T P+ S PGL L + S H
Sbjct: 13 AAARGGGRRGGRAPVATLAAASNTADPPQSTRPQARGS----PGLEVLVLLPSKDSLH 66
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 26 GAAGEGGGRR--SGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPG 70
G++G GG R SG +S+W S+ GS SG+ H+ PG
Sbjct: 288 GSSGNSGGSRGDSGSESSWGSSTGSSSGNHGGSGGGNGHKPGCEKPG 334
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 26 GAAGEGGGRR--SGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPG 70
G++G GG R SG +S+W S+ GS SG+ H+ PG
Sbjct: 288 GSSGNSGGSRGDSGSESSWGSSTGSSSGNHGGSGGGNGHKPGCEKPG 334
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 26 GAAGEGGGRR--SGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPG 70
G++G GG R SG +S+W S+ GS SG+ H+ PG
Sbjct: 288 GSSGNSGGSRGDSGSESSWGSSTGSSSGNHGGSGGGNGHKPGCEKPG 334
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 26 GAAGEGGGRR--SGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPG 70
G++G GG R SG +S+W S+ GS SG+ H+ PG
Sbjct: 288 GSSGNSGGSRGDSGSESSWGSSTGSSSGNHGGSGGGNGHKPGCEKPG 334
>gi|167830436 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2
[Homo sapiens]
Length = 994
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 15 ERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESG 51
+ WGR P + G GGG GH S GG G
Sbjct: 7 QNWGRDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGG 43
>gi|167830433 DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1
[Homo sapiens]
Length = 1008
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 15 ERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESG 51
+ WGR P + G GGG GH S GG G
Sbjct: 7 QNWGRDGGPRSSGGGYGGGPAGGHGGNRGSGGGGGGG 43
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 19 RRQIPEAGAAGEGGGRRSGH----KSAWQSAGGSES 50
RR+ P G+ G G RSGH + A Q AGG E+
Sbjct: 828 RRRSPSPGSQGPAGSGRSGHLRPARGARQGAGGPEA 863
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 30.4 bits (67), Expect = 0.32
Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 5 PRTEGLPLRLERWGRRQIPEAGAAGEGGG--RRSGHKSAWQSAGGSESGDPSAPTLPRLH 62
P E P RLE R PE GE G R+G +A G + P +PRL
Sbjct: 1181 PPPEAQPRRLEPAPPRARPEVAPEGEPGAPDSRAGGDTALSGDGDPPKPERKGPEMPRLF 1240
Query: 63 QSAISPPG 70
P G
Sbjct: 1241 LDLGPPQG 1248
>gi|21700763 hematological and neurological expressed 1-like [Homo
sapiens]
Length = 190
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 20 RQIPEAGAAGE-GGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPG 70
R IP GE G R++G + +S +P PR H ++PPG
Sbjct: 131 RSIPAGAEPGEKGSARKAGPAKEQEPMPTVDSHEPRLGPRPRSHNKVLNPPG 182
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 18 GRRQIP-EAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISP 68
G R P +A GGG R H++A G P LP LH SA +P
Sbjct: 114 GPRPSPCQAHDCERGGGGRPSHRAAAVDQGRPRPRVPRGQPLPGLHPSAAAP 165
>gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo
sapiens]
Length = 230
Score = 30.0 bits (66), Expect = 0.41
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 12/60 (20%)
Query: 16 RWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSA--ISPPGLRK 73
RWG R+ P RR+G W S G + S P P L SA PPGLR+
Sbjct: 37 RWGARRRP----------RRAGRGRRWGSLGTNGSLTGRGPGSPPLPPSAGPAPPPGLRE 86
>gi|130977756 transmembrane anterior posterior transformation 1
[Homo sapiens]
Length = 567
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 22 IPEAGAAGEGGG------RRSGHKSAWQSAGGSESGDPSAPTL 58
+ +A A GEGGG +R G A Q G G P AP L
Sbjct: 4 VGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQL 46
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 10 LPLRLERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGD-PSAPTLPRL 61
L + LER +++ E G G G G GG+ GD P P LP L
Sbjct: 301 LRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSL 353
>gi|33636756 MAP/microtubule affinity-regulating kinase 4 [Homo
sapiens]
Length = 688
Score = 30.0 bits (66), Expect = 0.41
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 32 GGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPGLRKTTTLL 78
GG+ ++ GG ++G P++PTL H++A P G + TT L
Sbjct: 571 GGQVRDRRAGGGGGGGVQNGPPASPTL--AHEAAPLPAGRPRPTTNL 615
>gi|169171483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 284
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 33 GRRSGHKSAWQSA---GGSESGDPSAPTLPRLHQSAISPPGL 71
G R + AW GGS GDP P+ P I+PPGL
Sbjct: 105 GPRGQAQQAWSQCCQPGGSTGGDPEQPSCP---VPLITPPGL 143
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 25 AGAAGEGGGRRSGHKSAWQSA-GGSESGD---PSAPTLPRLHQSAISPPGLRKTTTL 77
AG GEGGG+ S W+ A GG E G+ +AP ++A + GLR+ L
Sbjct: 173 AGGKGEGGGKESA--VLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPL 227
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 29.6 bits (65), Expect = 0.54
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 25 AGAAGEGGGRRSGHKSAWQSA-GGSESGD---PSAPTLPRLHQSAISPPGLRKTTTL 77
AG GEGGG+ S W+ A GG E G+ +AP ++A + GLR+ L
Sbjct: 173 AGGKGEGGGKESA--VLWKGAEGGGEKGNRNMAAAPLGDPAREAAQAQTGLRRRRPL 227
>gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens]
Length = 1740
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 20 RQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPGLR 72
R PE A + G G +AW ++G G P P LP S SP GLR
Sbjct: 1342 RLSPEVKARSQSG-TLDGESAAWSASGEDSRGQPEGP-LP--SSSPRSPSGLR 1390
>gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]
Length = 1807
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 20 RQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPGLR 72
R PE A + G G +AW ++G G P P LP S SP GLR
Sbjct: 1409 RLSPEVKARSQSG-TLDGESAAWSASGEDSRGQPEGP-LP--SSSPRSPSGLR 1457
>gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens]
Length = 1784
Score = 29.3 bits (64), Expect = 0.70
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 20 RQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPGLR 72
R PE A + G G +AW ++G G P P LP S SP GLR
Sbjct: 1386 RLSPEVKARSQSG-TLDGESAAWSASGEDSRGQPEGP-LP--SSSPRSPSGLR 1434
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 28 AGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPP 69
A E GGR + +A Q G S +G P AP H PP
Sbjct: 37 APEVGGRHAAAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPP 78
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 11 PLRLERWGRRQI-PEAGAAGEGGGRRSGHKSAWQSAGGSESG 51
P + W +RQ P+ G GGGR S++ GG E G
Sbjct: 316 PPEMPPWQKRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQG 357
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 29 GEGGGRRSGHKSAWQSAGGSESG 51
G GGGR + H+ W G G
Sbjct: 370 GRGGGRGNKHQGGWTDGGSGGGG 392
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 28.9 bits (63), Expect = 0.92
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 15 ERWGRRQIPEAGAAGEGGGRRSGHKSAWQSAGGSESGDPSAPTLPRLHQSAISPPGLRK 73
ER G + G G GGG G + + + GG E G P A + R SA+ G R+
Sbjct: 164 ERGGSGRSSAGGGGGGGGG--GGGRGSRRGRGGGERGGPRAQAV-RRRLSALRGRGRRR 219
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 28.9 bits (63), Expect = 0.92
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 26 GAAGEGGGRRSGHKSAWQSAGGSESGDPS----APTLPRLHQSAISPP 69
G+ G GGG SG A S G SG PS AP+ R S I P
Sbjct: 2298 GSGGSGGGGGSGGGGA-PSGGSGHSGGPSSCGGAPSTSRSRPSRIPQP 2344
>gi|24475586 ependymin related protein 1 precursor [Homo sapiens]
Length = 344
Score = 28.9 bits (63), Expect = 0.92
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 16 RWGRRQIPEAGAAGEGGGRRSGHKSAWQ-------SAGGSESGDPSAPTLPRLHQSAISP 68
R GRRQ +A AAG G GR S W + G SG P+ ++ S
Sbjct: 24 RSGRRQWQQAVAAGSGPGRNSSRAIHWSLPRALVPATGTRASGSQKRQRPPKGQEALWSR 83
Query: 69 PGLR 72
P R
Sbjct: 84 PHSR 87
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 25 AGAAGEGGGRRSGHKSAWQ---SAGGSESGDPSAPTLP 59
+ ++ +GG + G KS W+ S+ +SG PS PT+P
Sbjct: 114 SSSSSDGGSNKEGKKSRWKRKVSSSSPQSGCPS-PTIP 150
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,323,906
Number of Sequences: 37866
Number of extensions: 211876
Number of successful extensions: 1535
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1372
Number of HSP's gapped (non-prelim): 221
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.