Guide to the Human Genome
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Name: LOC100294431 Sequence: fasta or formatted (199aa) NCBI GI: 239752423
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         21           3
 C cysteine            2.5          5           1
 D aspartate           5.0         10           1
 E glutamate           5.5         11           2
 F phenylalanine       0.0          0           0
 G glycine            14.6         29           3
 H histidine           4.0          8           1
 I isoleucine          2.0          4           2
 K lysine              2.0          4           1
 L leucine            10.1         20           3
 M methionine          1.0          2           1
 N asparagine          1.5          3           1
 P proline             7.5         15           2
 Q glutamine           4.5          9           1
 R arginine           11.6         23           3
 S serine              5.5         11           2
 T threonine           3.5          7           1
 V valine              7.0         14           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LMO2                  0.021   LIM domain only 2 isoform 1 
LOC100289745          0.021   PREDICTED: hypothetical protein XP_002347086 
LOC100288749          0.021   PREDICTED: hypothetical protein XP_002342931 
LOC100133305          0.018   PREDICTED: hypothetical protein 
LOC100133305          0.018   PREDICTED: hypothetical protein 
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.018   voltage-dependent calcium channel alpha 1G subunit i...
GATAD1                0.018   GATA zinc finger domain containing 1 
TRIM67                0.018   tripartite motif-containing 67 
LOC100293311          0.016   PREDICTED: hypothetical protein 
LOC100290649          0.016   PREDICTED: hypothetical protein XP_002348220 
LOC100290939          0.016   PREDICTED: hypothetical protein XP_002347811 
LOC100289318          0.016   PREDICTED: hypothetical protein XP_002343871 
LOC100288410          0.016   PREDICTED: hypothetical protein XP_002343564 
CBFA2T3               0.016   myeloid translocation gene on chromosome 16 isoform ...
TCF20                 0.013   transcription factor 20 isoform 2 
TCF20                 0.013   transcription factor 20 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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