Guide to the Human Genome
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Name: LOC100134346 Sequence: fasta or formatted (284aa) NCBI GI: 169171483
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         21           2
 C cysteine            2.1          6           2
 D aspartate           3.2          9           1
 E glutamate           7.4         21           2
 F phenylalanine       1.4          4           2
 G glycine            11.3         32           2
 H histidine           1.1          3           1
 I isoleucine          0.7          2           1
 K lysine              1.8          5           1
 L leucine            12.3         35           2
 M methionine          2.1          6           1
 N asparagine          0.4          1           1
 P proline            14.1         40           2
 Q glutamine          10.2         29           2
 R arginine            6.0         17           2
 S serine              7.0         20           1
 T threonine           4.2         12           1
 V valine              3.5         10           2
 W tryptophan          2.8          8           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
MLL2                  0.030   myeloid/lymphoid or mixed-lineage leukemia 2 
FSCB                  0.030   fibrous sheath CABYR binding protein 
KIAA0907              0.026   hypothetical protein LOC22889 
COL13A1               0.024   alpha 1 type XIII collagen isoform 18 
COL13A1               0.024   alpha 1 type XIII collagen isoform 14 
COL13A1               0.024   alpha 1 type XIII collagen isoform 10 
CIZ1                  0.024   CDKN1A interacting zinc finger protein 1 isoform 4 ...
FYB                   0.024   FYN binding protein (FYB-120/130) isoform 2 
FYB                   0.024   FYN binding protein (FYB-120/130) isoform 1 
CCDC40                0.024   coiled-coil domain containing 40 
COL13A1               0.023   alpha 1 type XIII collagen isoform 20 
COL13A1               0.023   alpha 1 type XIII collagen isoform 19 
COL13A1               0.023   alpha 1 type XIII collagen isoform 17 
COL13A1               0.023   alpha 1 type XIII collagen isoform 16 
COL13A1               0.023   alpha 1 type XIII collagen isoform 15 
COL13A1               0.023   alpha 1 type XIII collagen isoform 13 
COL13A1               0.023   alpha 1 type XIII collagen isoform 12 
COL13A1               0.023   alpha 1 type XIII collagen isoform 11 
COL13A1               0.023   alpha 1 type XIII collagen isoform 9 
COL13A1               0.023   alpha 1 type XIII collagen isoform 7 
COL13A1               0.023   alpha 1 type XIII collagen isoform 6 
COL13A1               0.023   alpha 1 type XIII collagen isoform 5 
COL13A1               0.023   alpha 1 type XIII collagen isoform 4 
COL13A1               0.023   alpha 1 type XIII collagen isoform 3 
COL13A1               0.023   alpha 1 type XIII collagen isoform 2 
COL13A1               0.023   alpha 1 type XIII collagen isoform 1 
COL13A1               0.023   alpha 1 type XIII collagen isoform 8 
CIZ1                  0.021   CDKN1A interacting zinc finger protein 1 isoform 1 ...
CIZ1                  0.021   CDKN1A interacting zinc finger protein 1 isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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