Guide to the Human Genome
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Name: LOC100288410 Sequence: fasta or formatted (84aa) NCBI GI: 239745846
Description:

PREDICTED: hypothetical protein XP_002343564

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7          9           2
 C cysteine            1.2          1           1
 D aspartate           1.2          1           1
 E glutamate           6.0          5           1
 F phenylalanine       0.0          0           0
 G glycine            14.3         12           3
 H histidine           3.6          3           1
 I isoleucine          2.4          2           1
 K lysine              2.4          2           1
 L leucine             9.5          8           2
 M methionine          1.2          1           1
 N asparagine          2.4          2           1
 P proline             9.5          8           2
 Q glutamine           3.6          3           1
 R arginine           11.9         10           2
 S serine             10.7          9           1
 T threonine           6.0          5           3
 V valine              0.0          0           0
 W tryptophan          2.4          2           1
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343564 
LOC100293311          1.000   PREDICTED: hypothetical protein 
LOC100290939          1.000   PREDICTED: hypothetical protein XP_002347811 
LOC100294431          0.039   PREDICTED: hypothetical protein 
DMKN                  0.039   dermokine isoform 4 precursor 
DMKN                  0.039   dermokine isoform 5 precursor 
DMKN                  0.039   dermokine isoform 3 precursor 
DMKN                  0.039   dermokine isoform 2 precursor 
DHX36                 0.039   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.039   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
CTDP1                 0.033   CTD (carboxy-terminal domain, RNA polymerase II, pol...
LMTK3                 0.033   lemur tyrosine kinase 3 
HN1L                  0.033   hematological and neurological expressed 1-like [Hom...
LOC100292397          0.033   PREDICTED: hypothetical protein 
LOC100288426          0.033   PREDICTED: hypothetical protein XP_002343430 
TAPT1                 0.033   transmembrane anterior posterior transformation 1 [...
RING1                 0.033   ring finger protein 1 
MARK4                 0.033   MAP/microtubule affinity-regulating kinase 4 
LOC100134346          0.033   PREDICTED: hypothetical protein 
LOC100291533          0.033   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.033   PREDICTED: hypothetical protein XP_002342946 
TSC2                  0.026   tuberous sclerosis 2 isoform 4 
TSC2                  0.026   tuberous sclerosis 2 isoform 1 
TSC2                  0.026   tuberous sclerosis 2 isoform 5 
HOXD8                 0.026   homeobox D8 
FAM98A                0.026   hypothetical protein LOC25940 
LOC100292082          0.026   PREDICTED: hypothetical protein XP_002345881 
TRIO                  0.026   triple functional domain (PTPRF interacting) 
EPDR1                 0.026   ependymin related protein 1 precursor 
ASXL2                 0.026   additional sex combs like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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