Guide to the Human Genome
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Search of human proteins with 239745795

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
sapiens]
         (236 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]           484   e-137
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ...   484   e-137
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ...   484   e-137
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s...    48   6e-06
gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]            45   5e-05
gi|28875797 small protein rich in arginine and glycine [Homo sap...    44   1e-04
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma...    42   4e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    42   5e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    42   5e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     42   5e-04
gi|156616290 collagen type VI alpha 6 [Homo sapiens]                   42   5e-04
gi|169208819 PREDICTED: similar to kinase D-interacting substrat...    42   6e-04
gi|169208593 PREDICTED: similar to kinase D-interacting substrat...    42   6e-04
gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]            42   6e-04
gi|169208169 PREDICTED: similar to kinase D-interacting substrat...    42   6e-04
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s...    41   8e-04
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]            41   8e-04
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]            41   0.001
gi|10864053 myozenin 1 [Homo sapiens]                                  40   0.002
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    39   0.004
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    39   0.004
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    39   0.004
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]            39   0.004
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]            39   0.004
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ...    39   0.004
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]            39   0.004
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ...    39   0.004
gi|4506501 regulatory factor X-associated protein [Homo sapiens]       39   0.004

>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 236

 Score =  484 bits (1246), Expect = e-137
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60
           MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS
Sbjct: 1   MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60

Query: 61  SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120
           SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA
Sbjct: 61  SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120

Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
           QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ
Sbjct: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180

Query: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236
           HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT
Sbjct: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236


>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
           sapiens]
          Length = 236

 Score =  484 bits (1246), Expect = e-137
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60
           MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS
Sbjct: 1   MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60

Query: 61  SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120
           SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA
Sbjct: 61  SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120

Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
           QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ
Sbjct: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180

Query: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236
           HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT
Sbjct: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236


>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
           sapiens]
          Length = 236

 Score =  484 bits (1246), Expect = e-137
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60
           MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS
Sbjct: 1   MHICASEVLTTGRASSRGAPLTFILPPLVLRSRILAKCFCRHLRSWALQGLKLLLGWSPS 60

Query: 61  SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120
           SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA
Sbjct: 61  SLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQA 120

Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
           QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ
Sbjct: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180

Query: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236
           HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT
Sbjct: 181 HDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTGT 236


>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
           sapiens]
          Length = 451

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 43/123 (34%), Positives = 48/123 (39%), Gaps = 19/123 (15%)

Query: 110 GGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQ---------LLLGAGRAVDGFV 160
           GG  P  HP A  A+ A AAA         H GAA R+         L  GAG  V    
Sbjct: 17  GGTGPLMHPDAAAAAAAAAAAE------RLHAGAAYREVQKLMHHEWLGAGAGHPVGLAH 70

Query: 161 AQARP---GPGGQQQGG-HEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRS 216
            Q  P   G GG   GG H   G+     TGR     G GG   R   +  AH G+AW  
Sbjct: 71  PQWLPTGGGGGGDWAGGPHLEHGKAGGGGTGRADDGGGGGGFHARLVHQGAAHAGAAWAQ 130

Query: 217 WRT 219
             T
Sbjct: 131 GST 133


>gi|239742988 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 470

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 48/146 (32%), Positives = 61/146 (41%), Gaps = 16/146 (10%)

Query: 98  SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
           +G +A  A   TG        Q  GA  A AAA + H+   AH   AAR+ L+ A     
Sbjct: 305 AGHLAVGAAGLTGAHADLALAQLLGADAAAAAA-VQHE---AHARRAARRRLVRAPARPA 360

Query: 158 GFVAQAR--PGPGGQQQ--GGHEAEGQHDRP--RTGRGRGALGA----GGERGRAGERRR 207
             +A  R   G GGQ++  G H   G+   P  +     GA GA     GE    G+   
Sbjct: 361 AVLADGRLQGGQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAAEGEEDHEGDADG 420

Query: 208 AH--GGSAWRSWRTRPGGRGETGRPG 231
           AH  GG  W   R+   G GE G  G
Sbjct: 421 AHTGGGHGWHCGRSGGRGGGERGAAG 446


>gi|28875797 small protein rich in arginine and glycine [Homo
           sapiens]
          Length = 248

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 50/134 (37%), Positives = 56/134 (41%), Gaps = 20/134 (14%)

Query: 101 VAAQARAATGGVHPAGHPQAQGA--SGATAAARLSHQLLAAHGGAAAR-QLLLGAGRAVD 157
           + A AR A GG    G P  Q     G     R +  LL   GG + R Q LL  GRAV 
Sbjct: 92  IGALARGAIGG---RGLPIIQRGLPRGGLRGGRATRTLL--RGGMSLRGQNLLRGGRAVA 146

Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRA-GERRRAHGGSAWRS 216
             +   R G  G+   G          R G GRGA+G GG  GR  G   R  GG   R 
Sbjct: 147 PRMGLRRGGVRGRGGPG----------RGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRG 196

Query: 217 WRTRPGGRGETGRP 230
            R R  GRG   RP
Sbjct: 197 -RGRGRGRGALARP 209



 Score = 28.9 bits (63), Expect = 4.0
 Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 12/78 (15%)

Query: 170 QQQGGHEAEGQHDRPRTGRGRGALGA------------GGERGRAGERRRAHGGSAWRSW 217
           Q+ G    + +  RP     RGA+G             GG RG    R    GG + R  
Sbjct: 77  QRLGKSNIQARLGRPIGALARGAIGGRGLPIIQRGLPRGGLRGGRATRTLLRGGMSLRGQ 136

Query: 218 RTRPGGRGETGRPGGRTG 235
               GGR    R G R G
Sbjct: 137 NLLRGGRAVAPRMGLRRG 154


>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
           [Homo sapiens]
          Length = 526

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 29/68 (42%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 166 GPGGQQQ-GGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGR 224
           G G Q Q GG  + G   + R GRGRG  G GG  G  G  R + G       R R GGR
Sbjct: 193 GYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEP----RGRGGGR 248

Query: 225 GETGRPGG 232
           G  G  GG
Sbjct: 249 GGRGGMGG 256



 Score = 35.8 bits (81), Expect = 0.033
 Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 166 GPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGG 211
           GPGG   G H   G +   R G GRG    GG RGR G+R    GG
Sbjct: 454 GPGGGPGGSHMG-GNYGDDRRG-GRGGYDRGGYRGRGGDRGGFRGG 497



 Score = 34.3 bits (77), Expect = 0.096
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 153 GRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGS 212
           G +  G+  Q + G GG    G +  G   R  +G G G  G G  R   G   R  GG 
Sbjct: 188 GGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGG 247

Query: 213 AWRSWRTRPGGRGETGRPG 231
                R   GG G + R G
Sbjct: 248 -----RGGRGGMGGSDRGG 261



 Score = 31.6 bits (70), Expect = 0.62
 Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 24/106 (22%)

Query: 153 GRAVDGFVAQARPGPGGQQQG-----------GHEAEGQHDRPRTGRGRGALGA------ 195
           G+   G  +Q +P  GGQQQ            G+  + Q++    G G G  G       
Sbjct: 123 GQPQSGSYSQ-QPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQ 181

Query: 196 ------GGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
                 GG  G  G + ++ GG +    +   GGRG  G  GG  G
Sbjct: 182 SSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGG 227



 Score = 30.8 bits (68), Expect = 1.1
 Identities = 17/45 (37%), Positives = 19/45 (42%)

Query: 187 GRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
           G GRG  G GG  GR G      GG     + +  GG G   R G
Sbjct: 380 GNGRGGRGRGGPMGRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAG 424



 Score = 29.6 bits (65), Expect = 2.4
 Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 110 GGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAA--RQLLLGAGRAVDGFVAQARPGP 167
           GG    G  Q+  +SG  +     +Q  +  GG+    +Q   G GR   G       G 
Sbjct: 172 GGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGGSG-------GG 224

Query: 168 GGQQQGGHEAEGQHDRPRTGRGRGALGAGGERG 200
           GG   GG+        PR GRG G  G GG  G
Sbjct: 225 GGGGGGGYNRSSGGYEPR-GRGGGRGGRGGMGG 256



 Score = 28.9 bits (63), Expect = 4.0
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 164 RPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRP 221
           R G GG  +GG+   G  DR     GRG    GG+RG  G  +    G   +  R RP
Sbjct: 473 RGGRGGYDRGGYRGRGG-DRGGFRGGRG----GGDRGGFGPGKMDSRGEHRQDRRERP 525


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 44/141 (31%), Positives = 50/141 (35%), Gaps = 23/141 (16%)

Query: 92  QGLLHPSGRVAAQARAATGGVH-PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
           QGL  P G           G   PAG P AQG  G         Q +    GAA     +
Sbjct: 713 QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGL--------QGMPGERGAAG----I 760

Query: 151 GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHG 210
              +   G V +  P     + GG    G    P      G  GA GE+G  G    A  
Sbjct: 761 AGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP------GPAGANGEKGEVGPPGPAGS 814

Query: 211 GSAWRSWRTRPGGRGETGRPG 231
             A    R  PG RGETG PG
Sbjct: 815 AGA----RGAPGERGETGPPG 831



 Score = 37.7 bits (86), Expect = 0.009
 Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 32/168 (19%)

Query: 92  QGLLHPSGRVAAQ-ARAATGGVHPAGHPQAQGASG-------------ATAAARLSHQLL 137
           QG   P+G    + AR   GGV P G P  +GA G               A        L
Sbjct: 479 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGL 538

Query: 138 AAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQ--QGGHEAEGQHDR-----PRTGRGR 190
           A   GA       G            RPG  G Q   G   A G+  R     P+  RG+
Sbjct: 539 AGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ 598

Query: 191 -------GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
                  G  GA GE G+AGE+    G       R  PG  GETG  G
Sbjct: 599 PGVMGFPGPKGANGEPGKAGEK----GLPGAPGLRGLPGKDGETGAAG 642



 Score = 34.3 bits (77), Expect = 0.096
 Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 25/141 (17%)

Query: 105 ARAATGGVHPAGHPQAQGASGATAAARL--SHQLLAAHGGAAARQLLLGAG----RAVDG 158
           AR   G   P G P   G+ G   A+    +  +  A G A A  +    G    R   G
Sbjct: 382 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 441

Query: 159 FVAQARP-GPGGQQ-----QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGS 212
                 P GP GQ       G    +G    P     +GA G  GE G+ G         
Sbjct: 442 PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGA-------- 493

Query: 213 AWRSWRTRPGGRGETGRPGGR 233
                R  PGG G  G PG R
Sbjct: 494 -----RGEPGGVGPIGPPGER 509



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 44/139 (31%), Positives = 55/139 (39%), Gaps = 19/139 (13%)

Query: 108 ATGGVHPAGHPQAQGASGATA--AARLSHQLLAAHG--GAAARQLLLGAGRAVDGFVAQA 163
           A G   P+G P  QG +G T    AR +     A G  GAA R   +G   +        
Sbjct: 862 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR---VGPPGSNGNPGPPG 918

Query: 164 RPGPGGQQQGGHEAEGQHDRP-RTGRG--RGALGAGGERGRAGERRRA--------HGGS 212
            PGP G + G   A G    P R G    +G  G  GE+G  G+   +         G +
Sbjct: 919 PPGPSG-KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLA 977

Query: 213 AWRSWRTRPGGRGETGRPG 231
             R     PG RGE G PG
Sbjct: 978 GQRGIVGLPGQRGERGFPG 996



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 46/151 (30%), Positives = 53/151 (35%), Gaps = 23/151 (15%)

Query: 97   PSGRVAAQ-ARAATGGVHPAGHPQAQGASG-------------ATAAARLSHQLLAAHGG 142
            PSG+   + AR  +G    AG P  QG +G             + A      Q LA   G
Sbjct: 922  PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 981

Query: 143  AAARQLLLGAGRAVDGFVAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERG 200
                   L   R   GF     PGP G+  +QG   A G    P      G  G  GE G
Sbjct: 982  IVG----LPGQRGERGF--PGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPG 1035

Query: 201  RAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
            R G    A G           G RGETG  G
Sbjct: 1036 REGS-PGADGPPGRDGAAGVKGDRGETGAVG 1065



 Score = 32.0 bits (71), Expect = 0.48
 Identities = 40/143 (27%), Positives = 49/143 (34%), Gaps = 29/143 (20%)

Query: 108 ATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGP 167
           A G   P G P  QGA+G      L  +      G A  +   G          Q  PGP
Sbjct: 430 APGFPGPRGPPGPQGATGP-----LGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP 484

Query: 168 GGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGER-----------------RRAHG 210
            G++ G   A G+        G G +G  GERG  G R                 R   G
Sbjct: 485 AGEE-GKRGARGEPG------GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 537

Query: 211 GSAWRSWRTRPGGRGETGRPGGR 233
            +  +     PG  GE G PG R
Sbjct: 538 LAGPKGANGDPGRPGEPGLPGAR 560



 Score = 31.6 bits (70), Expect = 0.62
 Identities = 44/149 (29%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 91  VQGLLHPSGRVAAQARAATGGVHPA----GHPQAQGASGATAAARLSHQLLAAHGGAAAR 146
           V G   P G      +A   G+  A    G P   G +GA               G A  
Sbjct: 601 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP--------GPAGPAGE 652

Query: 147 QLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206
           +   GA     GF  Q  PGP G    G +  G    P      G +G  GERG  GE R
Sbjct: 653 RGEQGAP-GPSGF--QGLPGPPGPPGEGGKP-GDQGVPGEAGAPGLVGPRGERGFPGE-R 707

Query: 207 RAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
            + G    +  R  PG  G  G P G +G
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTDG-PKGASG 735



 Score = 31.6 bits (70), Expect = 0.62
 Identities = 41/153 (26%), Positives = 53/153 (34%), Gaps = 26/153 (16%)

Query: 85  LPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAA 144
           +P  +   G+  P G      R   G   P G P   G  G T         +   G A 
Sbjct: 751 MPGERGAAGIAGPKGD-----RGDVGEKGPEGAPGKDGGRGLTGP-------IGPPGPAG 798

Query: 145 ARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
           A       G       A AR  PG + + G         P    G+   GA GE+G AG+
Sbjct: 799 ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP--GAKGEQGEAGQ 856

Query: 205 RRRAHGGSAWRSWRTRPGGRGETGRPG--GRTG 235
           +  A            PG +G +G PG  G TG
Sbjct: 857 KGDAGA----------PGPQGPSGAPGPQGPTG 879



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 40/140 (28%), Positives = 45/140 (32%), Gaps = 21/140 (15%)

Query: 92   QGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLG 151
            QG + PSG   A AR   G   P G     G  G           L  H G    Q L G
Sbjct: 1094 QGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERG--------LKGHRGFTGLQGLPG 1143

Query: 152  AGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGG 211
                     A    GP G + G     G   +       G +G  G RGR+GE   A   
Sbjct: 1144 PPGPSGDQGASGPAGPSGPR-GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA--- 1199

Query: 212  SAWRSWRTRPGGRGETGRPG 231
                     PG  G  G PG
Sbjct: 1200 -------GPPGNPGPPGPPG 1212


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 44/141 (31%), Positives = 50/141 (35%), Gaps = 23/141 (16%)

Query: 92  QGLLHPSGRVAAQARAATGGVH-PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
           QGL  P G           G   PAG P AQG  G         Q +    GAA     +
Sbjct: 644 QGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGL--------QGMPGERGAAG----I 691

Query: 151 GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHG 210
              +   G V +  P     + GG    G    P      G  GA GE+G  G    A  
Sbjct: 692 AGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPP------GPAGANGEKGEVGPPGPAGS 745

Query: 211 GSAWRSWRTRPGGRGETGRPG 231
             A    R  PG RGETG PG
Sbjct: 746 AGA----RGAPGERGETGPPG 762



 Score = 37.7 bits (86), Expect = 0.009
 Identities = 51/168 (30%), Positives = 59/168 (35%), Gaps = 32/168 (19%)

Query: 92  QGLLHPSGRVAAQ-ARAATGGVHPAGHPQAQGASG-------------ATAAARLSHQLL 137
           QG   P+G    + AR   GGV P G P  +GA G               A        L
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGL 469

Query: 138 AAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQ--QGGHEAEGQHDR-----PRTGRGR 190
           A   GA       G            RPG  G Q   G   A G+  R     P+  RG+
Sbjct: 470 AGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ 529

Query: 191 -------GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
                  G  GA GE G+AGE+    G       R  PG  GETG  G
Sbjct: 530 PGVMGFPGPKGANGEPGKAGEK----GLPGAPGLRGLPGKDGETGAAG 573



 Score = 34.3 bits (77), Expect = 0.096
 Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 25/141 (17%)

Query: 105 ARAATGGVHPAGHPQAQGASGATAAARL--SHQLLAAHGGAAARQLLLGAG----RAVDG 158
           AR   G   P G P   G+ G   A+    +  +  A G A A  +    G    R   G
Sbjct: 313 ARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPG 372

Query: 159 FVAQARP-GPGGQQ-----QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGS 212
                 P GP GQ       G    +G    P     +GA G  GE G+ G         
Sbjct: 373 PQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGA-------- 424

Query: 213 AWRSWRTRPGGRGETGRPGGR 233
                R  PGG G  G PG R
Sbjct: 425 -----RGEPGGVGPIGPPGER 440



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 44/139 (31%), Positives = 55/139 (39%), Gaps = 19/139 (13%)

Query: 108 ATGGVHPAGHPQAQGASGATA--AARLSHQLLAAHG--GAAARQLLLGAGRAVDGFVAQA 163
           A G   P+G P  QG +G T    AR +     A G  GAA R   +G   +        
Sbjct: 793 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR---VGPPGSNGNPGPPG 849

Query: 164 RPGPGGQQQGGHEAEGQHDRP-RTGRG--RGALGAGGERGRAGERRRA--------HGGS 212
            PGP G + G   A G    P R G    +G  G  GE+G  G+   +         G +
Sbjct: 850 PPGPSG-KDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLA 908

Query: 213 AWRSWRTRPGGRGETGRPG 231
             R     PG RGE G PG
Sbjct: 909 GQRGIVGLPGQRGERGFPG 927



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 46/151 (30%), Positives = 53/151 (35%), Gaps = 23/151 (15%)

Query: 97  PSGRVAAQ-ARAATGGVHPAGHPQAQGASG-------------ATAAARLSHQLLAAHGG 142
           PSG+   + AR  +G    AG P  QG +G             + A      Q LA   G
Sbjct: 853 PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRG 912

Query: 143 AAARQLLLGAGRAVDGFVAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERG 200
                  L   R   GF     PGP G+  +QG   A G    P      G  G  GE G
Sbjct: 913 IVG----LPGQRGERGF--PGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPG 966

Query: 201 RAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
           R G    A G           G RGETG  G
Sbjct: 967 REGS-PGADGPPGRDGAAGVKGDRGETGAVG 996



 Score = 32.0 bits (71), Expect = 0.48
 Identities = 40/143 (27%), Positives = 49/143 (34%), Gaps = 29/143 (20%)

Query: 108 ATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGP 167
           A G   P G P  QGA+G      L  +      G A  +   G          Q  PGP
Sbjct: 361 APGFPGPRGPPGPQGATGP-----LGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP 415

Query: 168 GGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGER-----------------RRAHG 210
            G++ G   A G+        G G +G  GERG  G R                 R   G
Sbjct: 416 AGEE-GKRGARGEPG------GVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSG 468

Query: 211 GSAWRSWRTRPGGRGETGRPGGR 233
            +  +     PG  GE G PG R
Sbjct: 469 LAGPKGANGDPGRPGEPGLPGAR 491



 Score = 31.6 bits (70), Expect = 0.62
 Identities = 44/149 (29%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 91  VQGLLHPSGRVAAQARAATGGVHPA----GHPQAQGASGATAAARLSHQLLAAHGGAAAR 146
           V G   P G      +A   G+  A    G P   G +GA               G A  
Sbjct: 532 VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPP--------GPAGPAGE 583

Query: 147 QLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206
           +   GA     GF  Q  PGP G    G +  G    P      G +G  GERG  GE R
Sbjct: 584 RGEQGAP-GPSGF--QGLPGPPGPPGEGGKP-GDQGVPGEAGAPGLVGPRGERGFPGE-R 638

Query: 207 RAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
            + G    +  R  PG  G  G P G +G
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTDG-PKGASG 666



 Score = 31.6 bits (70), Expect = 0.62
 Identities = 41/153 (26%), Positives = 53/153 (34%), Gaps = 26/153 (16%)

Query: 85  LPVHQCVQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAA 144
           +P  +   G+  P G      R   G   P G P   G  G T         +   G A 
Sbjct: 682 MPGERGAAGIAGPKGD-----RGDVGEKGPEGAPGKDGGRGLTGP-------IGPPGPAG 729

Query: 145 ARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
           A       G       A AR  PG + + G         P    G+   GA GE+G AG+
Sbjct: 730 ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQP--GAKGEQGEAGQ 787

Query: 205 RRRAHGGSAWRSWRTRPGGRGETGRPG--GRTG 235
           +  A            PG +G +G PG  G TG
Sbjct: 788 KGDAGA----------PGPQGPSGAPGPQGPTG 810



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 40/140 (28%), Positives = 45/140 (32%), Gaps = 21/140 (15%)

Query: 92   QGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLG 151
            QG + PSG   A AR   G   P G     G  G           L  H G    Q L G
Sbjct: 1025 QGPMGPSG--PAGARGIQGPQGPRGDKGEAGEPGERG--------LKGHRGFTGLQGLPG 1074

Query: 152  AGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGG 211
                     A    GP G + G     G   +       G +G  G RGR+GE   A   
Sbjct: 1075 PPGPSGDQGASGPAGPSGPR-GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA--- 1130

Query: 212  SAWRSWRTRPGGRGETGRPG 231
                     PG  G  G PG
Sbjct: 1131 -------GPPGNPGPPGPPG 1143


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 42/128 (32%), Positives = 55/128 (42%), Gaps = 16/128 (12%)

Query: 109 TGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQL--LLGAGRAVDGFVAQARPG 166
           +G V P G+P A G +GA  AA L   +  A G    R +   +GA  A         PG
Sbjct: 291 SGPVGPPGNPGANGLTGAKGAAGLP-GVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPG 349

Query: 167 PGGQQ-QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225
           P G + + G++ E     P +   +G  G  GE G+ G    A  GSA       PG  G
Sbjct: 350 PAGSKGESGNKGE-----PGSAGPQGPPGPSGEEGKRGPNGEA--GSA-----GPPGPPG 397

Query: 226 ETGRPGGR 233
             G PG R
Sbjct: 398 LRGSPGSR 405



 Score = 36.2 bits (82), Expect = 0.025
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 165 PGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGR 224
           PGP G    G     Q+D    G G G +G  G RG  G    A G   ++     PG  
Sbjct: 65  PGPPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPG-AAGAPGPQGFQGPAGEPGEP 123

Query: 225 GETGRPGGR 233
           G+TG  G R
Sbjct: 124 GQTGPAGAR 132



 Score = 34.7 bits (78), Expect = 0.073
 Identities = 44/146 (30%), Positives = 53/146 (36%), Gaps = 17/146 (11%)

Query: 93  GLLHPSGRV-AAQARAATGGVHPAGHPQAQGASG-ATAAARLSHQLLAAHGGAAARQLLL 150
           GL+ P G   AA A    G   PAG P   G +G A A         A   G   +    
Sbjct: 94  GLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGPPGKAGEDGHPGKPGRP 153

Query: 151 GAGRAVDGFVAQARPG----PGGQQQGGHEA-EGQHDRPRTGRGRGALGAGGERGRAGER 205
           G    V    A+  PG    PG +   GH   +G   +P     +G  GA GE G  G+ 
Sbjct: 154 GERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQT 213

Query: 206 RRAHGGSAWRSWRTRPGGRGETGRPG 231
                       R  PG RG  G PG
Sbjct: 214 GA----------RGLPGERGRVGAPG 229



 Score = 34.7 bits (78), Expect = 0.073
 Identities = 46/158 (29%), Positives = 52/158 (32%), Gaps = 24/158 (15%)

Query: 92  QGLLHPSGRVAAQARAATGGVH-------PAGHPQAQGASGATAAA--------RLSHQL 136
           +G   P G   AQ      GV        P G P  QG  G +  A        R  H  
Sbjct: 519 RGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGE 578

Query: 137 LAAHGGAAARQLLLGAGRAVDGFVAQARP-GPGGQQ--QGGHEAEGQHDRPRTGRGRGAL 193
               G A  R       R   G    A P GP G +   G    +G    P      G  
Sbjct: 579 FGLPGPAGPR-----GERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTA 633

Query: 194 GAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
           G  G  G  GER  A G    +  +  PG RGE G PG
Sbjct: 634 GPSGPSGLPGERGAA-GIPGGKGEKGEPGLRGEIGNPG 670



 Score = 34.3 bits (77), Expect = 0.096
 Identities = 47/171 (27%), Positives = 62/171 (36%), Gaps = 28/171 (16%)

Query: 92  QGLLHPSGRVAAQARAATGGVH-------PAGHPQAQGASGATAAARLSHQLLA------ 138
           QGL  PSG      +    G+H       PAG    +G  G + AA  +  + +      
Sbjct: 555 QGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGP 614

Query: 139 -AHGGAAARQLLLGAGRAVDGFVAQARPG-------PGGQQQGGHEA-EGQHDRPRTGRG 189
               G      ++GA            PG       PGG+ + G     G+   P     
Sbjct: 615 PGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGA 674

Query: 190 RGA---LGAGGERGRAGERRR--AHGGSAWRSWRTRPGGRGETGRPGGRTG 235
           RGA   +GA G  G  G+R    A G +     R  PG RGE G P G  G
Sbjct: 675 RGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVG-PAGPNG 724



 Score = 33.9 bits (76), Expect = 0.13
 Identities = 44/157 (28%), Positives = 55/157 (35%), Gaps = 22/157 (14%)

Query: 86  PVHQCVQGLLHPSGRVAAQARAATGGVH-PAGHPQAQGASGATAAARLSHQLLAAHGGAA 144
           P +    GL    G       A   G+  P G P   GA+GAT A     + L    G A
Sbjct: 297 PGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGA-----RGLVGEPGPA 351

Query: 145 ARQLLLGAGRAVDGFVAQARPGPGGQQ-----QGGHEAEGQHDRPRTGRGRGALGAGGER 199
             +   G          Q  PGP G++      G   + G    P      G+ G  G  
Sbjct: 352 GSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGAD 411

Query: 200 GRAG-----ERRRAHGGSAWRSWRTRPGGRGETGRPG 231
           GRAG       R A G +  R      G  G+ GRPG
Sbjct: 412 GRAGVMGPPGSRGASGPAGVR------GPNGDAGRPG 442



 Score = 31.6 bits (70), Expect = 0.62
 Identities = 41/134 (30%), Positives = 46/134 (34%), Gaps = 24/134 (17%)

Query: 98  SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
           +G       A T G  P G P  QG  GA         +L   G    R L   AG    
Sbjct: 843 AGEKGPSGEAGTAG--PPGTPGPQGLLGAPG-------ILGLPGSRGERGLPGVAG---- 889

Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
              A   PGP G         G    P      G  GA GE GR G     + G   R  
Sbjct: 890 ---AVGEPGPLGIAG----PPGARGPPGAVGSPGVNGAPGEAGRDGNP--GNDGPPGRDG 940

Query: 218 RTRPGGRGETGRPG 231
           +  PG +GE G PG
Sbjct: 941 Q--PGHKGERGYPG 952



 Score = 31.2 bits (69), Expect = 0.81
 Identities = 41/149 (27%), Positives = 54/149 (36%), Gaps = 23/149 (15%)

Query: 93  GLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGA 152
           G++ P+G V A   A   G  P G   ++G  G           +    GAA R    G 
Sbjct: 751 GVVGPTGPVGAAGPAGPNG--PPGPAGSRGDGGPPG--------MTGFPGAAGRTGPPGP 800

Query: 153 GRAVDGFVAQARPGPGGQQ--QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRA-- 208
              + G      PGP G++  +G    +G   R       G  G  GE+G +GE   A  
Sbjct: 801 S-GISG--PPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGP 857

Query: 209 ------HGGSAWRSWRTRPGGRGETGRPG 231
                  G          PG RGE G PG
Sbjct: 858 PGTPGPQGLLGAPGILGLPGSRGERGLPG 886


>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
          Length = 2263

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 42/146 (28%), Positives = 54/146 (36%), Gaps = 12/146 (8%)

Query: 97   PSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQL-LAAHGGAAARQLLLGAGRA 155
            P G   ++ + A  G    GH   QG +G      L   L L    G      + G    
Sbjct: 1541 PPGTPGSRRKTAAHGRR--GHTGPQGTAGIPGPDGLEGSLGLKGPQGPRGEAGVKGEKGG 1598

Query: 156  VDGFVAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSA 213
            V     Q  PGPGG+   QG   ++G    P     +GA+G  G RG  G       GS 
Sbjct: 1599 VGSKGPQGPPGPGGEAGNQGRLGSQGNKGEPGDLGEKGAVGFPGPRGLQGNDGSPGYGSV 1658

Query: 214  WR-------SWRTRPGGRGETGRPGG 232
             R        +    G +GE G PGG
Sbjct: 1659 GRKGAKGQEGFPGESGPKGEIGDPGG 1684



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 165  PGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGR 224
            PG  G++ G   ++G   +  T   RGA G  G+ G  G      G +  +  R R G R
Sbjct: 1478 PGRKGEK-GDEGSQGSPGKRGTPGDRGAKGLRGDPGAPGVDSSIEGPTGLKGERGRQGRR 1536

Query: 225  GETGRPG 231
            G  G PG
Sbjct: 1537 GWPGPPG 1543


>gi|169208819 PREDICTED: similar to kinase D-interacting substrate
           220 [Homo sapiens]
          Length = 380

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 55/173 (31%), Positives = 66/173 (38%), Gaps = 29/173 (16%)

Query: 62  LSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARA-ATGGVHPAGHPQA 120
           L + R  +A L  L L     H      CVQ L  P GR AA A A  +    P G P  
Sbjct: 145 LRLDRTNRAGLTALQLAAARGHGT----CVQALTGPWGRAAAAAAARGSNSDSPPGRP-- 198

Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
                   AA   H+  +       R LL    RA  G   +A  G  G+  G H A+G 
Sbjct: 199 ------APAASPEHRRPSPR--RLPRPLLARFARAAGGHGGEA--GSAGKNSGRHRAQGS 248

Query: 181 HDRPRTGRGRG-ALGAGGE----RGRAG------ERRRAHGGSAWRSWRTRPG 222
            +RP  GR    ALGA  E    R RAG         ++ G   WRS     G
Sbjct: 249 -ERPELGRSMSLALGAVTEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLEG 300


>gi|169208593 PREDICTED: similar to kinase D-interacting substrate
           220 [Homo sapiens]
          Length = 380

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 55/173 (31%), Positives = 66/173 (38%), Gaps = 29/173 (16%)

Query: 62  LSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARA-ATGGVHPAGHPQA 120
           L + R  +A L  L L     H      CVQ L  P GR AA A A  +    P G P  
Sbjct: 145 LRLDRTNRAGLTALQLAAARGHGT----CVQALTGPWGRAAAAAAARGSNSDSPPGRP-- 198

Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
                   AA   H+  +       R LL    RA  G   +A  G  G+  G H A+G 
Sbjct: 199 ------APAASPEHRRPSPR--RLPRPLLARFARAAGGHGGEA--GSAGKNSGRHRAQGS 248

Query: 181 HDRPRTGRGRG-ALGAGGE----RGRAG------ERRRAHGGSAWRSWRTRPG 222
            +RP  GR    ALGA  E    R RAG         ++ G   WRS     G
Sbjct: 249 -ERPELGRSMSLALGAVTEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLEG 300


>gi|169168886 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 49/146 (33%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 98  SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
           +G   A A  A G    A   Q  GA  A AAA + H+   AH   AAR+ L+ A     
Sbjct: 115 AGLTGAHADLAVG--RGAELAQLLGADAAAAAA-VQHE---AHARRAARRRLVRAPARPA 168

Query: 158 GFVAQAR--PGPGGQQQ--GGHEAEGQHDRP--RTGRGRGALGA----GGERGRAGERRR 207
             +A  R   G GGQ++  G H   G+   P  +     GA GA     GE    G+   
Sbjct: 169 AVLADGRLQGGQGGQRRSVGAHALPGRPRVPPWQPPAAAGAPGAYPAAEGEEDHEGDADG 228

Query: 208 AH--GGSAWRSWRTRPGGRGETGRPG 231
           AH  GG  W   R+   G GE G  G
Sbjct: 229 AHTGGGHGWHCGRSGGRGGGERGAAG 254


>gi|169208169 PREDICTED: similar to kinase D-interacting substrate
           220 [Homo sapiens]
          Length = 380

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 55/173 (31%), Positives = 66/173 (38%), Gaps = 29/173 (16%)

Query: 62  LSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQARA-ATGGVHPAGHPQA 120
           L + R  +A L  L L     H      CVQ L  P GR AA A A  +    P G P  
Sbjct: 145 LRLDRTNRAGLTALQLAAARGHGT----CVQALTGPWGRAAAAAAARGSNSDSPPGRP-- 198

Query: 121 QGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQ 180
                   AA   H+  +       R LL    RA  G   +A  G  G+  G H A+G 
Sbjct: 199 ------APAASPEHRRPSPR--RLPRPLLARFARAAGGHGGEA--GSAGKNSGRHRAQGS 248

Query: 181 HDRPRTGRGRG-ALGAGGE----RGRAG------ERRRAHGGSAWRSWRTRPG 222
            +RP  GR    ALGA  E    R RAG         ++ G   WRS     G
Sbjct: 249 -ERPELGRSMSLALGAVTEEEAARLRAGALMALPNSPQSSGTGRWRSQEVLEG 300


>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
           sapiens]
          Length = 940

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 40/136 (29%), Positives = 44/136 (32%), Gaps = 24/136 (17%)

Query: 106 RAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARP 165
           R A GG    G P  +G  G        H+     GG        G G +      +   
Sbjct: 723 RGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGG--------GMGNSSGH---RPHE 771

Query: 166 GPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225
           GPGG    GH       RP  G G    G GG R   G      GGS  R      GG G
Sbjct: 772 GPGGGMGSGH-------RPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMG 824

Query: 226 ETG------RPGGRTG 235
             G       PGG  G
Sbjct: 825 AGGGHRPHEGPGGSMG 840



 Score = 37.4 bits (85), Expect = 0.011
 Identities = 39/124 (31%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 110 GGV-HPAGHPQAQGASGATAAARLSHQLLAAH-GGAAARQLLLGAGRAVDGFVAQARP-- 165
           GG+ + +GH   +G  G   +    H+      GG    +   G G  + G     RP  
Sbjct: 759 GGMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGH-RPHE 817

Query: 166 GPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRG 225
           GPGG    G  A G H RP  G G    G+GG R   G     HGG         PG RG
Sbjct: 818 GPGG----GMGAGGGH-RPHEGPGGSMGGSGGHRPHEGP---GHGGPHGHRPHDVPGHRG 869

Query: 226 ETGR 229
              R
Sbjct: 870 HDHR 873



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 42/157 (26%), Positives = 50/157 (31%), Gaps = 43/157 (27%)

Query: 114 PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGF----------VAQA 163
           P  HP  +       + ++  Q+L  HG       LLG G   +GF          +   
Sbjct: 592 PNSHPSEELLKQPDYSDKIK-QMLVPHG-------LLGPGPIANGFPPGGPGGPKGMQHF 643

Query: 164 RPGPGGQQQGGHEAEGQHDRPR---------------TGRG---RGALGAGGERGRAGER 205
            PGPGG   G H   G    PR                G G   RG    GG     G  
Sbjct: 644 PPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPY 703

Query: 206 RRAHGGSAWRS-------WRTRPGGRGETGRPGGRTG 235
            R  GG            +R   GGR   G P GR G
Sbjct: 704 HRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGG 740



 Score = 29.3 bits (64), Expect = 3.1
 Identities = 40/152 (26%), Positives = 45/152 (29%), Gaps = 33/152 (21%)

Query: 110 GGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPG- 168
           GG  P  H    G  G     RL        GG        G G  + G   +  PGPG 
Sbjct: 648 GGPMPGPH----GGPGGPVGPRLLGPPPPPRGGDPFWD---GPGDPMRGGPMRGGPGPGP 700

Query: 169 GQQQGGHEAEGQHDRP---------------------RTGRGRGALGAGGERGRAGERRR 207
           G    G    G ++ P                     R G G G +G GG R   G    
Sbjct: 701 GPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGG 760

Query: 208 AHGGSAWRSWRTRPGGRGETGR----PGGRTG 235
               S  R      GG G   R    PGG  G
Sbjct: 761 MGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMG 792


>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score = 41.2 bits (95), Expect = 8e-04
 Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 14/113 (12%)

Query: 96  HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAH-----GGAAARQLLL 150
           H  G     A  A GG   AG  + +  SG     R   Q   A       GAAAR   L
Sbjct: 18  HKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADAL 77

Query: 151 GAGRAVDGFVAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
            AG++       A P PGG+  ++G   A  +      GRG GA  + GE  R
Sbjct: 78  TAGKS-------AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 123


>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 436

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 19/142 (13%)

Query: 98  SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
           +G+   +AR    G    GHP  +GA+G  A              +A R+   G   A  
Sbjct: 256 AGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPE--------SSADRR---GCDCAAW 304

Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGG--------ERGRAGERRRAH 209
           G      P   G+   GH      D P T   RG  G G         + G A    RA 
Sbjct: 305 GVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364

Query: 210 GGSAWRSWRTRPGGRGETGRPG 231
             SA RS   RP GR   G PG
Sbjct: 365 AVSAARSDAPRPKGREIRGEPG 386



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 142 GAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
           G   R+LL    R      A  R   GG+  GG    G   R    R R +         
Sbjct: 193 GRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP--- 249

Query: 202 AGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
              RRR   G   R  RT   G    G PG
Sbjct: 250 --PRRRRRAGQTHRRARTEVAGNVHVGHPG 277


>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 436

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 19/142 (13%)

Query: 98  SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
           +G+   +AR    G    GHP  +GA+G  A              +A R+   G   A  
Sbjct: 256 AGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPE--------SSADRR---GCDCAAW 304

Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGG--------ERGRAGERRRAH 209
           G      P   G+   GH      D P T   RG  G G         + G A    RA 
Sbjct: 305 GVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364

Query: 210 GGSAWRSWRTRPGGRGETGRPG 231
             SA RS   RP GR   G PG
Sbjct: 365 AVSAARSDAPRPKGREIRGEPG 386



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 142 GAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
           G   R+LL    R      A  R   GG+  GG    G   R    R R +         
Sbjct: 193 GRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP--- 249

Query: 202 AGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
              RRR   G   R  RT   G    G PG
Sbjct: 250 --PRRRRRAGQTHRRARTEVAGNVHVGHPG 277


>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 436

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 42/142 (29%), Positives = 51/142 (35%), Gaps = 19/142 (13%)

Query: 98  SGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVD 157
           +G+   +AR    G    GHP  +GA+G  A              +A R+   G   A  
Sbjct: 256 AGQTHRRARTEVAGNVHVGHPGREGAAGEGAGRDPE--------SSADRR---GCDCAAW 304

Query: 158 GFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGG--------ERGRAGERRRAH 209
           G      P   G+   GH      D P T   RG  G G         + G A    RA 
Sbjct: 305 GVSLAPPPLQAGEPSRGHPHPRLTDVPGTQMSRGVRGQGAPSLLLQPVKPGTAAPSPRAE 364

Query: 210 GGSAWRSWRTRPGGRGETGRPG 231
             SA RS   RP GR   G PG
Sbjct: 365 AVSAARSDAPRPKGREIRGEPG 386



 Score = 27.7 bits (60), Expect = 9.0
 Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 142 GAAARQLLLGAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
           G   R+LL    R      A  R   GG+  GG    G   R    R R +         
Sbjct: 193 GRRRRRLLAPRSRCDIPRRAPHRLLAGGRAAGGGRRVGSRRRATVTRARPSRSLAPP--- 249

Query: 202 AGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
              RRR   G   R  RT   G    G PG
Sbjct: 250 --PRRRRRAGQTHRRARTEVAGNVHVGHPG 277


>gi|10864053 myozenin 1 [Homo sapiens]
          Length = 299

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 30/79 (37%), Positives = 36/79 (45%), Gaps = 14/79 (17%)

Query: 153 GRAVDGFVAQARPGPGGQQQGGHEAEGQH---DRPRTGRGRGALGAGGERGRAGERRRAH 209
           G A  GF      G GG Q GG  + GQ+    +   G G GA G GG  G+AG      
Sbjct: 99  GTAGQGFSYSKSNGRGGSQAGGSGSAGQYGSDQQHHLGSGSGAGGTGGPAGQAG-----R 153

Query: 210 GGSAWRSWRTRPGGRGETG 228
           GG+A  +      G GETG
Sbjct: 154 GGAAGTA------GVGETG 166


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 114 PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQ----------- 162
           P G P   GA G          L   +GG  ++   + A  A    + Q           
Sbjct: 485 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPG 544

Query: 163 -----ARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
                 RPGP G   G   A+G+   P     RG  G  G  G+ G+R R  G    R  
Sbjct: 545 PMGLTGRPGPVGGP-GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP-GADGGRGM 602

Query: 218 RTRPGGRGETGRPG 231
              PG +G+ G  G
Sbjct: 603 PGEPGAKGDRGFDG 616



 Score = 35.8 bits (81), Expect = 0.033
 Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 27/161 (16%)

Query: 92  QGLLHPSGRVAAQARAATGGVH----PAGHPQAQGASGATAA-------ARLSHQLLAAH 140
           QG + P G    Q +    G+     P GHP  +G SG   A         + +      
Sbjct: 717 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGV 776

Query: 141 GGAAARQLLLGA--GRAVDGFVAQARPGPGGQQ--QGGHEAEGQ-----HDRPRTGRGR- 190
            GA   + L G+   +  DGF     PG  G    +G     GQ      D P   +GR 
Sbjct: 777 KGADGVRGLKGSKGEKGEDGF-----PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRA 831

Query: 191 GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
           G  G  G  G+AGE+ +  G      +  R G +G TG PG
Sbjct: 832 GPTGDPGPSGQAGEKGKL-GVPGLPGYPGRQGPKGSTGFPG 871



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 16/83 (19%)

Query: 165  PGPGGQQQ-GGHEAE-------------GQHDRPRTGRGRGALGAGGERGRAGER-RRAH 209
            PGP GQ   GG + E             G+   P     RG  GA G  GR GE+  +  
Sbjct: 1335 PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGE 1394

Query: 210  GGSAWRSWRTRP-GGRGETGRPG 231
             G+     +T P G +G  G+PG
Sbjct: 1395 AGAEGPPGKTGPVGPQGPAGKPG 1417



 Score = 32.0 bits (71), Expect = 0.48
 Identities = 35/125 (28%), Positives = 42/125 (33%), Gaps = 20/125 (16%)

Query: 109  TGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPG 168
            +G   P G P  +G  GA               GA  RQ   GA           + GP 
Sbjct: 1362 SGEAGPPGPPGKRGPPGAA--------------GAEGRQGEKGAKGEAGAEGPPGKTGPV 1407

Query: 169  GQQ--QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGE 226
            G Q   G    EG    P     +G  GA G+ G  G      G       +  PG +GE
Sbjct: 1408 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM----GPPGLPGLKGDPGSKGE 1463

Query: 227  TGRPG 231
             G PG
Sbjct: 1464 KGHPG 1468



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 37/134 (27%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 106  RAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARP 165
            R + G   P G P  +G SG                G    +   G    V     +  P
Sbjct: 900  RGSRGARGPTGKPGPKGTSGGDGPP-----------GPPGERGPQGPQGPVGFPGPKGPP 948

Query: 166  GPGGQ--------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
            GP G+        Q+G    +G+   P  G   G  G  GE G  GE  R H G      
Sbjct: 949  GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE--RGHPGP----- 1001

Query: 218  RTRPGGRGETGRPG 231
               PG  GE G PG
Sbjct: 1002 ---PGPPGEQGLPG 1012



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 43/151 (28%), Positives = 51/151 (33%), Gaps = 18/151 (11%)

Query: 96   HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155
            HP  R     +  TG   P G    QG +G T    +  +      G    Q L GA   
Sbjct: 959  HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP--IGERGHPGPPGPPGEQGLPGAA-G 1015

Query: 156  VDGFVAQARPGPGGQQ-----------QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
             +G  A+  PGP G              G     G    P    G G  G  G  G  GE
Sbjct: 1016 KEG--AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1073

Query: 205  RRRAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
            R  A G +       RPG +G  G P G  G
Sbjct: 1074 RGSA-GTAGPIGLPGRPGPQGPPG-PAGEKG 1102



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 24/84 (28%)

Query: 165 PGPGGQ-----------------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRR 207
           PGP GQ                 +QG   + G    P     +GA G  G+ G  G+R  
Sbjct: 837 PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQR-- 894

Query: 208 AHGGSAWRSWRTRPGGRGETGRPG 231
             G +  R  R   G RG TG+PG
Sbjct: 895 --GPTGPRGSR---GARGPTGKPG 913



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 34/143 (23%)

Query: 91   VQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
            +QGL  P G      +   G V P G P   G  G                GA   Q   
Sbjct: 1211 LQGLPGPPGE-----KGENGDVGPMGPPGPPGPRGPQGP-----------NGADGPQGPP 1254

Query: 151  GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRA-- 208
            G+  +V G   +  PG  G      EA                G GG +G  GE+  A  
Sbjct: 1255 GSVGSVGGVGEKGEPGEAGNPGPPGEA----------------GVGGPKGERGEKGEAGP 1298

Query: 209  HGGSAWRSWRTRPGGRGETGRPG 231
             G +     +  PG  G  G PG
Sbjct: 1299 PGAAGPPGAKGPPGDDGPKGNPG 1321


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
           sapiens]
          Length = 1767

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 114 PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQ----------- 162
           P G P   GA G          L   +GG  ++   + A  A    + Q           
Sbjct: 434 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPG 493

Query: 163 -----ARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
                 RPGP G   G   A+G+   P     RG  G  G  G+ G+R R  G    R  
Sbjct: 494 PMGLTGRPGPVGGP-GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP-GADGGRGM 551

Query: 218 RTRPGGRGETGRPG 231
              PG +G+ G  G
Sbjct: 552 PGEPGAKGDRGFDG 565



 Score = 35.8 bits (81), Expect = 0.033
 Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 27/161 (16%)

Query: 92  QGLLHPSGRVAAQARAATGGVH----PAGHPQAQGASGATAA-------ARLSHQLLAAH 140
           QG + P G    Q +    G+     P GHP  +G SG   A         + +      
Sbjct: 666 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGV 725

Query: 141 GGAAARQLLLGA--GRAVDGFVAQARPGPGGQQ--QGGHEAEGQ-----HDRPRTGRGR- 190
            GA   + L G+   +  DGF     PG  G    +G     GQ      D P   +GR 
Sbjct: 726 KGADGVRGLKGSKGEKGEDGF-----PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRA 780

Query: 191 GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
           G  G  G  G+AGE+ +  G      +  R G +G TG PG
Sbjct: 781 GPTGDPGPSGQAGEKGKL-GVPGLPGYPGRQGPKGSTGFPG 820



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 16/83 (19%)

Query: 165  PGPGGQQQ-GGHEAE-------------GQHDRPRTGRGRGALGAGGERGRAGER-RRAH 209
            PGP GQ   GG + E             G+   P     RG  GA G  GR GE+  +  
Sbjct: 1284 PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGE 1343

Query: 210  GGSAWRSWRTRP-GGRGETGRPG 231
             G+     +T P G +G  G+PG
Sbjct: 1344 AGAEGPPGKTGPVGPQGPAGKPG 1366



 Score = 32.0 bits (71), Expect = 0.48
 Identities = 35/125 (28%), Positives = 42/125 (33%), Gaps = 20/125 (16%)

Query: 109  TGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPG 168
            +G   P G P  +G  GA               GA  RQ   GA           + GP 
Sbjct: 1311 SGEAGPPGPPGKRGPPGAA--------------GAEGRQGEKGAKGEAGAEGPPGKTGPV 1356

Query: 169  GQQ--QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGE 226
            G Q   G    EG    P     +G  GA G+ G  G      G       +  PG +GE
Sbjct: 1357 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM----GPPGLPGLKGDPGSKGE 1412

Query: 227  TGRPG 231
             G PG
Sbjct: 1413 KGHPG 1417



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 37/134 (27%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 106 RAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARP 165
           R + G   P G P  +G SG                G    +   G    V     +  P
Sbjct: 849 RGSRGARGPTGKPGPKGTSGGDGPP-----------GPPGERGPQGPQGPVGFPGPKGPP 897

Query: 166 GPGGQ--------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
           GP G+        Q+G    +G+   P  G   G  G  GE G  GE  R H G      
Sbjct: 898 GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE--RGHPGP----- 950

Query: 218 RTRPGGRGETGRPG 231
              PG  GE G PG
Sbjct: 951 ---PGPPGEQGLPG 961



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 43/151 (28%), Positives = 51/151 (33%), Gaps = 18/151 (11%)

Query: 96   HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155
            HP  R     +  TG   P G    QG +G T    +  +      G    Q L GA   
Sbjct: 908  HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP--IGERGHPGPPGPPGEQGLPGAA-G 964

Query: 156  VDGFVAQARPGPGGQQ-----------QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
             +G  A+  PGP G              G     G    P    G G  G  G  G  GE
Sbjct: 965  KEG--AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1022

Query: 205  RRRAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
            R  A G +       RPG +G  G P G  G
Sbjct: 1023 RGSA-GTAGPIGLPGRPGPQGPPG-PAGEKG 1051



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 24/84 (28%)

Query: 165 PGPGGQ-----------------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRR 207
           PGP GQ                 +QG   + G    P     +GA G  G+ G  G+R  
Sbjct: 786 PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQR-- 843

Query: 208 AHGGSAWRSWRTRPGGRGETGRPG 231
             G +  R  R   G RG TG+PG
Sbjct: 844 --GPTGPRGSR---GARGPTGKPG 862



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 34/143 (23%)

Query: 91   VQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
            +QGL  P G      +   G V P G P   G  G                GA   Q   
Sbjct: 1160 LQGLPGPPGE-----KGENGDVGPMGPPGPPGPRGPQGP-----------NGADGPQGPP 1203

Query: 151  GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRA-- 208
            G+  +V G   +  PG  G      EA                G GG +G  GE+  A  
Sbjct: 1204 GSVGSVGGVGEKGEPGEAGNPGPPGEA----------------GVGGPKGERGEKGEAGP 1247

Query: 209  HGGSAWRSWRTRPGGRGETGRPG 231
             G +     +  PG  G  G PG
Sbjct: 1248 PGAAGPPGAKGPPGDDGPKGNPG 1270


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
           sapiens]
          Length = 1806

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 36/134 (26%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 114 PAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQ----------- 162
           P G P   GA G          L   +GG  ++   + A  A    + Q           
Sbjct: 473 PPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPG 532

Query: 163 -----ARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
                 RPGP G   G   A+G+   P     RG  G  G  G+ G+R R  G    R  
Sbjct: 533 PMGLTGRPGPVGGP-GSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRP-GADGGRGM 590

Query: 218 RTRPGGRGETGRPG 231
              PG +G+ G  G
Sbjct: 591 PGEPGAKGDRGFDG 604



 Score = 35.8 bits (81), Expect = 0.033
 Identities = 46/161 (28%), Positives = 62/161 (38%), Gaps = 27/161 (16%)

Query: 92  QGLLHPSGRVAAQARAATGGVH----PAGHPQAQGASGATAA-------ARLSHQLLAAH 140
           QG + P G    Q +    G+     P GHP  +G SG   A         + +      
Sbjct: 705 QGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGV 764

Query: 141 GGAAARQLLLGA--GRAVDGFVAQARPGPGGQQ--QGGHEAEGQ-----HDRPRTGRGR- 190
            GA   + L G+   +  DGF     PG  G    +G     GQ      D P   +GR 
Sbjct: 765 KGADGVRGLKGSKGEKGEDGF-----PGFKGDMGLKGDRGEVGQIGPRGEDGPEGPKGRA 819

Query: 191 GALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGETGRPG 231
           G  G  G  G+AGE+ +  G      +  R G +G TG PG
Sbjct: 820 GPTGDPGPSGQAGEKGKL-GVPGLPGYPGRQGPKGSTGFPG 859



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 16/83 (19%)

Query: 165  PGPGGQQQ-GGHEAE-------------GQHDRPRTGRGRGALGAGGERGRAGER-RRAH 209
            PGP GQ   GG + E             G+   P     RG  GA G  GR GE+  +  
Sbjct: 1323 PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGE 1382

Query: 210  GGSAWRSWRTRP-GGRGETGRPG 231
             G+     +T P G +G  G+PG
Sbjct: 1383 AGAEGPPGKTGPVGPQGPAGKPG 1405



 Score = 32.0 bits (71), Expect = 0.48
 Identities = 35/125 (28%), Positives = 42/125 (33%), Gaps = 20/125 (16%)

Query: 109  TGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARPGPG 168
            +G   P G P  +G  GA               GA  RQ   GA           + GP 
Sbjct: 1350 SGEAGPPGPPGKRGPPGAA--------------GAEGRQGEKGAKGEAGAEGPPGKTGPV 1395

Query: 169  GQQ--QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSWRTRPGGRGE 226
            G Q   G    EG    P     +G  GA G+ G  G      G       +  PG +GE
Sbjct: 1396 GPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPM----GPPGLPGLKGDPGSKGE 1451

Query: 227  TGRPG 231
             G PG
Sbjct: 1452 KGHPG 1456



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 37/134 (27%), Positives = 45/134 (33%), Gaps = 29/134 (21%)

Query: 106  RAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQARP 165
            R + G   P G P  +G SG                G    +   G    V     +  P
Sbjct: 888  RGSRGARGPTGKPGPKGTSGGDGPP-----------GPPGERGPQGPQGPVGFPGPKGPP 936

Query: 166  GPGGQ--------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRAHGGSAWRSW 217
            GP G+        Q+G    +G+   P  G   G  G  GE G  GE  R H G      
Sbjct: 937  GPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGE--RGHPGP----- 989

Query: 218  RTRPGGRGETGRPG 231
               PG  GE G PG
Sbjct: 990  ---PGPPGEQGLPG 1000



 Score = 30.4 bits (67), Expect = 1.4
 Identities = 43/151 (28%), Positives = 51/151 (33%), Gaps = 18/151 (11%)

Query: 96   HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155
            HP  R     +  TG   P G    QG +G T    +  +      G    Q L GA   
Sbjct: 947  HPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGP--IGERGHPGPPGPPGEQGLPGAA-G 1003

Query: 156  VDGFVAQARPGPGGQQ-----------QGGHEAEGQHDRPRTGRGRGALGAGGERGRAGE 204
             +G  A+  PGP G              G     G    P    G G  G  G  G  GE
Sbjct: 1004 KEG--AKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1061

Query: 205  RRRAHGGSAWRSWRTRPGGRGETGRPGGRTG 235
            R  A G +       RPG +G  G P G  G
Sbjct: 1062 RGSA-GTAGPIGLPGRPGPQGPPG-PAGEKG 1090



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 24/84 (28%)

Query: 165 PGPGGQ-----------------QQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRR 207
           PGP GQ                 +QG   + G    P     +GA G  G+ G  G+R  
Sbjct: 825 PGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQR-- 882

Query: 208 AHGGSAWRSWRTRPGGRGETGRPG 231
             G +  R  R   G RG TG+PG
Sbjct: 883 --GPTGPRGSR---GARGPTGKPG 901



 Score = 30.0 bits (66), Expect = 1.8
 Identities = 37/143 (25%), Positives = 46/143 (32%), Gaps = 34/143 (23%)

Query: 91   VQGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLL 150
            +QGL  P G      +   G V P G P   G  G                GA   Q   
Sbjct: 1199 LQGLPGPPGE-----KGENGDVGPMGPPGPPGPRGPQGP-----------NGADGPQGPP 1242

Query: 151  GAGRAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERRRA-- 208
            G+  +V G   +  PG  G      EA                G GG +G  GE+  A  
Sbjct: 1243 GSVGSVGGVGEKGEPGEAGNPGPPGEA----------------GVGGPKGERGEKGEAGP 1286

Query: 209  HGGSAWRSWRTRPGGRGETGRPG 231
             G +     +  PG  G  G PG
Sbjct: 1287 PGAAGPPGAKGPPGDDGPKGNPG 1309


>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 105 ARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAH-----GGAAARQLLLGAGRAVDGF 159
           A  A GG   AG  + +  SG     R   Q   A       GAAAR   L AG++    
Sbjct: 58  AGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKS---- 113

Query: 160 VAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
              A P PGG+  ++G   A  +      GRG GA  + GE  R
Sbjct: 114 ---AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 154


>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 42/125 (33%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 119 QAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRAVDGFVAQAR--PGPGGQQQ--GG 174
           Q  GA  A AAA + H+   AH    AR+ L+ A       +A  R   G GGQ++  G 
Sbjct: 151 QLLGADAAAAAA-VQHE---AHARRTARRWLVRAPARPAAVLADGRLQGGQGGQRRSVGA 206

Query: 175 HEAEGQHDRP--RTGRGRGALGA----GGERGRAGERRRAH--GGSAWRSWRTRPGGRGE 226
           H   G+   P  +     GA GA     GE    G+   AH  GG  W   R+   G GE
Sbjct: 207 HALPGRPRVPPWQPPAAAGAPGAYPAAEGEEDHEGDADGAHTGGGHGWHCGRSGGRGGGE 266

Query: 227 TGRPG 231
            G  G
Sbjct: 267 RGAAG 271


>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
           sapiens]
          Length = 304

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 34/95 (35%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 141 GGAAARQLLLGAG-RAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGER 199
           GG AA   +L AG R+  G    A PG  G +  G    G   R  T RGRG     G  
Sbjct: 63  GGPAAGSAILRAGSRSPRG----AGPGAAGPRAAGRGGAGGGGRCCT-RGRGRFPCAGSG 117

Query: 200 GRAGERRRAHGGSAWRS----WRTRPGGRGETGRP 230
           GR    R  H  S  RS    W   P  RG    P
Sbjct: 118 GRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEP 152


>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 105 ARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAH-----GGAAARQLLLGAGRAVDGF 159
           A  A GG   AG  + +  SG     R   Q   A       GAAAR   L AG++    
Sbjct: 58  AGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPAPKEFQGDGAAARADALTAGKS---- 113

Query: 160 VAQARPGPGGQ--QQGGHEAEGQHDRPRTGRGRGALGAGGERGR 201
              A P PGG+  ++G   A  +      GRG GA  + GE  R
Sbjct: 114 ---AEPAPGGEGGERGEESASERESERAPGRGPGARSSAGEPER 154


>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
           sapiens]
          Length = 304

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 34/95 (35%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 141 GGAAARQLLLGAG-RAVDGFVAQARPGPGGQQQGGHEAEGQHDRPRTGRGRGALGAGGER 199
           GG AA   +L AG R+  G    A PG  G +  G    G   R  T RGRG     G  
Sbjct: 63  GGPAAGSAILRAGSRSPRG----AGPGAAGPRAAGRGGAGGGGRCCT-RGRGRFPCAGSG 117

Query: 200 GRAGERRRAHGGSAWRS----WRTRPGGRGETGRP 230
           GR    R  H  S  RS    W   P  RG    P
Sbjct: 118 GRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEP 152


>gi|4506501 regulatory factor X-associated protein [Homo sapiens]
          Length = 272

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 44/144 (30%), Positives = 57/144 (39%), Gaps = 15/144 (10%)

Query: 92  QGLLHPSGRVAAQARAATGGVHPAGHPQAQGASGATAAAR---LSHQLLAAHGGAAARQL 148
           QG+   +G  AA        + PA  P    AS A AA++   L  Q  A    AAA   
Sbjct: 4   QGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAAPGG 63

Query: 149 LLGAGRAVDGFVAQARPGPGGQQQGGHEAE--GQHDRPRTGRGRGALG--------AGGE 198
            +GAG+ V      A  G G ++ G  EA+     D P  G    +L         +GGE
Sbjct: 64  SVGAGKPVRYLCEGA--GDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGGE 121

Query: 199 RGRAGERRRAHGGSAWRSWRTRPG 222
               G RRR  GG +     T  G
Sbjct: 122 GSSGGARRRGSGGGSMSKTCTYEG 145


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,263,218
Number of Sequences: 37866
Number of extensions: 624793
Number of successful extensions: 5388
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 416
Number of HSP's that attempted gapping in prelim test: 3709
Number of HSP's gapped (non-prelim): 1534
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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