Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239745779
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745779 PREDICTED: hypothetical protein XP_002343588 [Homo
sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745779 PREDICTED: hypothetical protein XP_002343588 [Homo ... 426 e-120
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 37 0.009
gi|9506557 Down syndrome critical region protein 6 [Homo sapiens] 37 0.011
gi|42821110 hypothetical protein LOC340602 [Homo sapiens] 33 0.12
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 33 0.12
gi|239757786 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.21
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 32 0.36
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 32 0.36
gi|109452595 zinc finger protein 205 [Homo sapiens] 32 0.47
gi|109452593 zinc finger protein 205 [Homo sapiens] 32 0.47
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens] 32 0.47
gi|112821690 G protein-regulated inducer of neurite outgrowth 3 ... 32 0.47
gi|148612879 polyhomeotic like 3 [Homo sapiens] 31 0.62
gi|22209004 popeye protein 2 [Homo sapiens] 31 0.62
gi|38373671 SEC24-related protein C [Homo sapiens] 31 0.81
gi|38373669 SEC24-related protein C [Homo sapiens] 31 0.81
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 30 1.1
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 30 1.1
gi|54607077 ankyrin repeat domain 57 [Homo sapiens] 30 1.1
gi|169204521 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|169205149 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo ... 30 1.4
gi|169204400 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|157311649 neogenin homolog 1 [Homo sapiens] 30 1.4
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 30 1.4
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens] 30 1.8
gi|239757898 PREDICTED: similar to testis expressed sequence 13A... 30 1.8
gi|239754942 PREDICTED: hypothetical protein [Homo sapiens] 30 1.8
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens] 30 1.8
>gi|239745779 PREDICTED: hypothetical protein XP_002343588 [Homo
sapiens]
Length = 201
Score = 426 bits (1095), Expect = e-120
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MGTHRPQQVEWFPPAKGEGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIP 60
MGTHRPQQVEWFPPAKGEGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIP
Sbjct: 1 MGTHRPQQVEWFPPAKGEGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIP 60
Query: 61 GENPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDHVCSVGPTATIRTQLRAQ 120
GENPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDHVCSVGPTATIRTQLRAQ
Sbjct: 61 GENPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDHVCSVGPTATIRTQLRAQ 120
Query: 121 RCSEDRQWICTSGSIPVALPGPGSAPSGWETWADLGSRAGRSQGSGLNSSTAHGRAESKT 180
RCSEDRQWICTSGSIPVALPGPGSAPSGWETWADLGSRAGRSQGSGLNSSTAHGRAESKT
Sbjct: 121 RCSEDRQWICTSGSIPVALPGPGSAPSGWETWADLGSRAGRSQGSGLNSSTAHGRAESKT 180
Query: 181 QGHVRIPRPVTASLTPDVTLT 201
QGHVRIPRPVTASLTPDVTLT
Sbjct: 181 QGHVRIPRPVTASLTPDVTLT 201
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 37.4 bits (85), Expect = 0.009
Identities = 48/158 (30%), Positives = 60/158 (37%), Gaps = 25/158 (15%)
Query: 11 WFPPAKGEGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIPGENPSARTPL 70
W PPA GE SRD A AG PG+ G RA P E + T
Sbjct: 750 WSPPAPGE------SRD-RARGAGQP-GPGSGSGAERAGP-----------ERRARDTQT 790
Query: 71 NTREDSLPSASPPGLLHFPQLPKGSRLPRT--RDHVCSVGPTATIRTQLRAQRCSEDRQW 128
TR D L ++ G +L G R+ R R + A R RA++ R
Sbjct: 791 RTRRDKLTDSARGGRA---RLTAGRRVRRESGRRRAGATSQGAIRRAASRARKGESRRPL 847
Query: 129 ICTSGSIPVALPGPGSAPSGWETWADLGSRAGRSQGSG 166
S P ALP P +A S +W SR R+ G
Sbjct: 848 PANSAGRP-ALPSPAAARSARGSWGLRASRPSRAAPRG 884
>gi|9506557 Down syndrome critical region protein 6 [Homo sapiens]
Length = 190
Score = 37.0 bits (84), Expect = 0.011
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 2 GTHRPQQVEWFPPAKGEGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIPG 61
G H P W PP GP + A W W PG+ R RP E A+Q G
Sbjct: 16 GCHCPGDAPWRPPPP-RGP------ESPAPWRPWIQTPGDAELTRTGRPLEPRADQHTFG 68
Query: 62 ENPS--------ARTPLNTREDSLPSASPPGLLHFP 89
+ P++ R++ L S+ L FP
Sbjct: 69 SKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFP 104
>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
Length = 503
Score = 33.5 bits (75), Expect = 0.12
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 34 GWTVPPGNTRGKRRARPQEDHAEQEI-----PGENPSARTPLNTREDSLPSASPPGLLHF 88
G VP G ++ + HA++ + PG + + P R + P+ PPG F
Sbjct: 111 GCVVPEGGSQAAVGPQKATGHADEHLAQTKSPGNSRRRKQPC--RNQAAPAQKPPGRRLF 168
Query: 89 PQ-LPKGSRLPRTRDHVCSVGPTATIRTQ 116
P+ LP S R + CS T++ TQ
Sbjct: 169 PEPLPPSSPGFRPSSYPCSGASTSSQATQ 197
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 33.5 bits (75), Expect = 0.12
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 39 PGNTRGKRR---ARPQEDHAEQ------EIPGENPSARTPLNTREDSLPSASPPGLLHFP 89
PG G R ++P++ H +Q ++PG PS+ P D P ASP P
Sbjct: 223 PGTRSGTRPGPFSQPKQQHQQQLAEDAKDVPGGGPSSSAPAGAEADG-PKASPEAR---P 278
Query: 90 QLPKGSRLP 98
Q+P R+P
Sbjct: 279 QIPTKPRVP 287
>gi|239757786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 82
Score = 33.1 bits (74), Expect = 0.16
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 140 PGPGSAPSGWETWADLGSRAGRSQGSGLNSSTAHGRAESKTQGHVRIPRPVTASLTPDVT 199
P G A +G + + SR GR GS NS HG+ +SK RIP ASL
Sbjct: 13 PESGVAAAGKQEPGFIISRRGRGAGSSSNSVITHGKRKSKGSSK-RIPPSKNASLGEGPY 71
Query: 200 LT 201
LT
Sbjct: 72 LT 73
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.21
Identities = 38/156 (24%), Positives = 52/156 (33%), Gaps = 22/156 (14%)
Query: 45 KRRARPQEDHAEQEIPGENPSARTPLN--TREDSLPSASPPGLLHFPQLPKGSRLPRTRD 102
K A PQE P RTPL +R S P L P+ + P +D
Sbjct: 1548 KPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLS-PRRSRSGSSPEVKD 1606
Query: 103 HVCSVGPTATIRTQLRAQRCSEDRQWICTSGSIPVALPGPGSAPSGWETWADLGSRAGRS 162
P A R Q + E + P P + P + + R
Sbjct: 1607 K-----PRAAPRAQSGSDSSPEPK------------APAPRALPRRSRSGSSSKGRGPSP 1649
Query: 163 QGSGLNSSTAHGRAESKT--QGHVRIPRPVTASLTP 196
+GS S+ +S+T +G P P T S TP
Sbjct: 1650 EGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTP 1685
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 32.0 bits (71), Expect = 0.36
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDH--VCSVGPTATIRTQLRAQ 120
+P++ T E+S S S PG H P + P H P +T T L A
Sbjct: 981 SPASTTSSGVSEESTTSRSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPAS 1040
Query: 121 RCS-----EDRQWICTSGSIPVAL-PGPGSAPSGWETWADLGSRAGRSQGSGL-NSSTAH 173
+ E +SGS AL PG +A S + S G + + +S+T+
Sbjct: 1041 TTTSGPSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSNPGSTHTTLFPDSTTSS 1100
Query: 174 GRAESKTQGHVRIPRPVTASLTP 196
G E+ T+ H P T +L+P
Sbjct: 1101 GIVEASTRVHSSTGSPRT-TLSP 1122
Score = 31.2 bits (69), Expect = 0.62
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDH--VCSVGPTATIRTQLRAQ 120
+P++ T E+S S S PG H P + P H P +T T L A
Sbjct: 3621 SPASTTSSGVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPAS 3680
Query: 121 RCS-----EDRQWICTSGSIPVAL-PGPGSAPSGWETWADLGSRAGRSQGSGL-NSSTAH 173
+ E +SGS AL PG +A S + S G + + +S+T+
Sbjct: 3681 TTTSGSSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDSTTSS 3740
Query: 174 GRAESKTQGHVRIPRPVTASLTP 196
G E+ T+ H P T +L+P
Sbjct: 3741 GIVEASTRVHSSTGSPRT-TLSP 3762
Score = 30.0 bits (66), Expect = 1.4
Identities = 46/169 (27%), Positives = 61/169 (36%), Gaps = 31/169 (18%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDH---VCSVGPTATIRTQL-R 118
+P++ T L E+S S S PG H P + P + V S P +T T R
Sbjct: 3899 SPASMTSLGVGEESTTSRSQPGSTHSTVSPASTTTPGLSEESTTVYSSSPGSTETTVFPR 3958
Query: 119 AQRCSEDRQWICTSGSIP---------------------VALPG-PGSAPSGWE---TWA 153
+ S R+ T S P A PG P S +G T A
Sbjct: 3959 STTTSVRREEPTTFHSRPASTHTTLFTEDSTTSGLTEESTAFPGSPASTQTGLPATLTTA 4018
Query: 154 DLGSRAGRSQGSGLNSSTAHGRAESKTQGHV--RIPRPVTASLTPDVTL 200
DLG + S ++ T A S T G V P ++ S T TL
Sbjct: 4019 DLGEESTTFPSSSGSTGTKLSPARSTTSGLVGESTPSRLSPSSTETTTL 4067
Score = 29.6 bits (65), Expect = 1.8
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 10/143 (6%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDH--VCSVGPTATIRTQLRAQ 120
+P++ T E+S S S PG H P + P H P +T T L A
Sbjct: 2064 SPASTTSSGVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPAS 2123
Query: 121 RCSEDRQWICTS-----GSIPVAL-PGPGSAPSGWETWADLGSRAGRSQGSGL-NSSTAH 173
+ T+ GS AL PG +A S + S G + + +S+T+
Sbjct: 2124 TTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDSTTSS 2183
Query: 174 GRAESKTQGHVRIPRPVTASLTP 196
G E+ T+ H P T +L+P
Sbjct: 2184 GIVEASTRVHSSTGSPRT-TLSP 2205
Score = 29.6 bits (65), Expect = 1.8
Identities = 47/169 (27%), Positives = 61/169 (36%), Gaps = 31/169 (18%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLP-----RTRDHVCSVGPTATI---R 114
+P++ T L E+S S S PG H P + P T + S G T T R
Sbjct: 2342 SPASMTSLGVGEESTTSRSQPGSTHSTVSPASTTTPGLSEESTTVYSSSPGSTETTVFPR 2401
Query: 115 TQLRAQRCSEDRQW---------------ICTSGSIP--VALPG-PGSAPSGWE---TWA 153
T + R E + TSG A PG P S +G T A
Sbjct: 2402 TPTTSVRGEEPTTFHSRPASTHTTLFTEDSTTSGLTEESTAFPGSPASTQTGLPATLTTA 2461
Query: 154 DLGSRAGRSQGSGLNSSTAHGRAESKTQGHV--RIPRPVTASLTPDVTL 200
DLG + S ++ T A S T G V P ++ S T TL
Sbjct: 2462 DLGEESTTFPSSSGSTGTTLSPARSTTSGLVGESTPSRLSPSSTETTTL 2510
Score = 29.3 bits (64), Expect = 2.4
Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 10/143 (6%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDH--VCSVGPTATIRTQLRAQ 120
+P+ T E+S S S PG H P + P H P +T T L A
Sbjct: 2538 SPATTTSSGVSEESSTSHSQPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPAS 2597
Query: 121 RCSEDRQWICTS-----GSIPVAL-PGPGSAPSGWETWADLGSRAGRSQGSGL-NSSTAH 173
+ T+ GS AL PG +A S + S G + + +S+T+
Sbjct: 2598 TTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDSTTSS 2657
Query: 174 GRAESKTQGHVRIPRPVTASLTP 196
G E+ T+ H P T +L+P
Sbjct: 2658 GIVEASTRVHSSTGSPRT-TLSP 2679
Score = 28.9 bits (63), Expect = 3.1
Identities = 45/169 (26%), Positives = 61/169 (36%), Gaps = 31/169 (18%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLP-----RTRDHVCSVGPTATI---- 113
+P++ T L E+S S S PG H P + P T + S G T T
Sbjct: 2816 SPASMTSLGVGEESTTSRSQPGSTHSTVSPASTTTPGLSEESTTVYSSSPGSTETTVFPR 2875
Query: 114 --RTQLRAQ-------RCSEDRQWICTSGSIP-------VALPG-PGSAPSGWE---TWA 153
T +R + R + + T S A PG P S +G T A
Sbjct: 2876 STTTSVRGEEPTTFHSRPASTHTTLFTEDSTTSGLTEESTAFPGSPASTQTGLPATLTTA 2935
Query: 154 DLGSRAGRSQGSGLNSSTAHGRAESKTQGHV--RIPRPVTASLTPDVTL 200
DLG + S ++ T A S T G V P ++ S T TL
Sbjct: 2936 DLGEESTTFPSSSGSTGTTLSPARSTTSGLVGESTPSRLSPSSTETTTL 2984
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 32.0 bits (71), Expect = 0.36
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDH--VCSVGPTATIRTQLRAQ 120
+P++ T E+S S S PG H P + P H P +T T L A
Sbjct: 468 SPASTTSSGVSEESTTSRSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPAS 527
Query: 121 RCS-----EDRQWICTSGSIPVAL-PGPGSAPSGWETWADLGSRAGRSQGSGL-NSSTAH 173
+ E +SGS AL PG +A S + S G + + +S+T+
Sbjct: 528 TTTSGPSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSNPGSTHTTLFPDSTTSS 587
Query: 174 GRAESKTQGHVRIPRPVTASLTP 196
G E+ T+ H P T +L+P
Sbjct: 588 GIVEASTRVHSSTGSPRT-TLSP 609
>gi|109452595 zinc finger protein 205 [Homo sapiens]
Length = 554
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 18 EGPMMGYSRDVEADWAGWTVPPGNTRGKRRAR--PQEDHAE---QEIPGENPSARTPLNT 72
E P G+ G VP G+T+ + P+E H+E QE + PL+
Sbjct: 19 EVPDRGHPHQEMPSKLGEAVPSGDTQESLHIKMEPEEPHSEGASQEDGAQGAWGWAPLSH 78
Query: 73 REDSLPSASPPGLLHFPQLPKGSRLPRTRD 102
P G L P++P SR RTRD
Sbjct: 79 GSKEKALFLPGGALPSPRIPVLSREGRTRD 108
>gi|109452593 zinc finger protein 205 [Homo sapiens]
Length = 554
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
Query: 18 EGPMMGYSRDVEADWAGWTVPPGNTRGKRRAR--PQEDHAE---QEIPGENPSARTPLNT 72
E P G+ G VP G+T+ + P+E H+E QE + PL+
Sbjct: 19 EVPDRGHPHQEMPSKLGEAVPSGDTQESLHIKMEPEEPHSEGASQEDGAQGAWGWAPLSH 78
Query: 73 REDSLPSASPPGLLHFPQLPKGSRLPRTRD 102
P G L P++P SR RTRD
Sbjct: 79 GSKEKALFLPGGALPSPRIPVLSREGRTRD 108
>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
Length = 841
Score = 31.6 bits (70), Expect = 0.47
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 33 AGWTVPPGNTRGKRRARPQEDHAEQEIPGENPSARTPLNTREDSLPSASPPGLLHFPQLP 92
+G PP G ++ P+ + +++P + P R+P S + PPG P
Sbjct: 133 SGAETPPSKKAGSQKPTPEGRESSRKVPPQKP-RRSPNTQLSVSFDESCPPG-----PSP 186
Query: 93 KGSRLPRTR 101
+G LP R
Sbjct: 187 RGGNLPLQR 195
>gi|112821690 G protein-regulated inducer of neurite outgrowth 3
[Homo sapiens]
Length = 776
Score = 31.6 bits (70), Expect = 0.47
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 21/154 (13%)
Query: 50 PQEDHAEQEIPGENPSARTPLNTREDSLPSASPPGLLHFPQLPK---GSRLPRTRDHVCS 106
P H Q IPG+ P+A T + EDSL + P+ P G L ++D V
Sbjct: 129 PANQHTCQSIPGDQPNAITS-SMPEDSLMRSQRTSNREQPEKPSCPVGGVLSSSKDQVSC 187
Query: 107 VGPT-----ATIRTQLRAQRCSEDRQWICTSGSIPVALPGPGSAPSGWETWADLGSRAGR 161
P+ T++T + A R + + S PV GP G +++ S
Sbjct: 188 EFPSPETIQGTVQTPVTAAR-------VVSHSSSPVG--GPEGERQGAICDSEMRSCKPL 238
Query: 162 SQGSGLNSSTAHGRAESKTQGHVRI---PRPVTA 192
++ SG + + S QG + P P+T+
Sbjct: 239 TRESGCSENKQPSVTASGPQGTTSVTPQPTPLTS 272
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 31.2 bits (69), Expect = 0.62
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 35 WTVPPGNT----RGKRRARPQ---EDHAEQEIPGENPSARTPLNTREDSLPSA 80
W P N RG+R + P +H +++P PSA L + EDS+PSA
Sbjct: 837 WNRKPDNQSLGHRGRRPSGPDGAAREHILRQLPITYPSAEEDLASHEDSVPSA 889
>gi|22209004 popeye protein 2 [Homo sapiens]
Length = 364
Score = 31.2 bits (69), Expect = 0.62
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 48 ARPQEDHAEQEI--PGENPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPR 99
A P+ + ++E+ P +P TP + ++ P ++PP +FP P +RL R
Sbjct: 278 AGPESEKGDEEVCEPAVSPPQATPTSLQQTP-PCSTPPATTNFPAPPTRARLSR 330
>gi|38373671 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 30.8 bits (68), Expect = 0.81
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 24/118 (20%)
Query: 77 LPSASPPGLLHFPQLPKGSRLPRTRDHVCSVGP---TATIRTQLRAQRCSEDRQWICTSG 133
LP + P G P P G++ P + + GP +A + TQL + S G
Sbjct: 104 LPGSQPFGS---PLAPVGNQPPVLQPY----GPPPTSAQVATQLSGMQIS---------G 147
Query: 134 SIPVALPGPGSAPSGWETWADLGSRAGRSQGSGLNSSTAHGRAE--SKTQGHVRIPRP 189
++ P P S+ G+ L S +G SGL S G+A S+ QGH I P
Sbjct: 148 AVA---PAPPSSGLGFGPPTSLASASGSFPNSGLYGSYPQGQAPPLSQAQGHPGIQTP 202
>gi|38373669 SEC24-related protein C [Homo sapiens]
Length = 1094
Score = 30.8 bits (68), Expect = 0.81
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 24/118 (20%)
Query: 77 LPSASPPGLLHFPQLPKGSRLPRTRDHVCSVGP---TATIRTQLRAQRCSEDRQWICTSG 133
LP + P G P P G++ P + + GP +A + TQL + S G
Sbjct: 104 LPGSQPFGS---PLAPVGNQPPVLQPY----GPPPTSAQVATQLSGMQIS---------G 147
Query: 134 SIPVALPGPGSAPSGWETWADLGSRAGRSQGSGLNSSTAHGRAE--SKTQGHVRIPRP 189
++ P P S+ G+ L S +G SGL S G+A S+ QGH I P
Sbjct: 148 AVA---PAPPSSGLGFGPPTSLASASGSFPNSGLYGSYPQGQAPPLSQAQGHPGIQTP 202
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 25 SRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIPGENPSARTPLNTR 73
S D+EAD A T+P G R +R+ + Q++P E P NTR
Sbjct: 781 SSDMEADMAMETLPDGTKRSRRQIKEPVKFVPQDVPPE-PKKIPIRNTR 828
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 25 SRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIPGENPSARTPLNTR 73
S D+EAD A T+P G R +R+ + Q++P E P NTR
Sbjct: 781 SSDMEADMAMETLPDGTKRSRRQIKEPVKFVPQDVPPE-PKKIPIRNTR 828
>gi|54607077 ankyrin repeat domain 57 [Homo sapiens]
Length = 525
Score = 30.4 bits (67), Expect = 1.1
Identities = 44/187 (23%), Positives = 62/187 (33%), Gaps = 41/187 (21%)
Query: 17 GEGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIPGENPSARTPLNTREDS 76
G+ P + + + EA P G + R R + A + +PG+ RE
Sbjct: 92 GDPPRIQVTAEPEA-------PDGPAGPEARDRLPDAAAPESLPGQG---------RE-- 133
Query: 77 LPSASPPGLLHFPQLPKGSR----------LPRT-----------RDHVCSVGPTATIRT 115
L PP H+P L G+R LPRT H C +
Sbjct: 134 LGEGEPPAPAHWPPLSAGARRKNSRRDVQPLPRTPAPGPSEDLELPPHGCEEADRGSSLV 193
Query: 116 QLRAQRCSEDRQWICTSGSIPVALPGPGSAPSGWETWADLGSRAGRSQGSGLNSSTAHGR 175
AQR + GS P P G + G GR G ++S A
Sbjct: 194 GATAQRPARQNLRDLVMGSSPQL--KRSVCPGGSSPGSSSGGGRGRGGGDSDSASVASSS 251
Query: 176 AESKTQG 182
AE ++ G
Sbjct: 252 AEEESSG 258
>gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 30.0 bits (66), Expect = 1.4
Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 18 EGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQ-EDHAEQEIPGENPSARTPLNTR--- 73
EG G R VEAD A P R RARP+ H E + + P R
Sbjct: 340 EGRARGRHR-VEADAAD-AAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDT 397
Query: 74 EDSLPSASPPGLLHFPQLP 92
ED LPS+SP L QLP
Sbjct: 398 EDYLPSSSPHQLRPHSQLP 416
>gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 30.0 bits (66), Expect = 1.4
Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 18 EGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQ-EDHAEQEIPGENPSARTPLNTR--- 73
EG G R VEAD A P R RARP+ H E + + P R
Sbjct: 340 EGRARGRHR-VEADAAD-AAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDT 397
Query: 74 EDSLPSASPPGLLHFPQLP 92
ED LPS+SP L QLP
Sbjct: 398 EDYLPSSSPHQLRPHSQLP 416
>gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo
sapiens]
Length = 149
Score = 30.0 bits (66), Expect = 1.4
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 111 ATIRTQLRAQRCSEDRQWICTSGSIPVALP--GPGSAPSGW------ETWADLG------ 156
A +R +L +R R W C SG P AL A + W E A+ G
Sbjct: 2 ADVRNELGLKRPLAGRSWTCRSGRKPGALDWGDRSEARASWAWRVRCEAEAEAGPVQAFE 61
Query: 157 -SRAGRSQGSGLNSSTAHGRAESKTQGHVRIPRPVT 191
AG ++ + +SS A+S+ +G R PR ++
Sbjct: 62 RQEAGPAKAAWRSSSAPEEAAKSQKRGLGRPPRAMS 97
>gi|169204400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 30.0 bits (66), Expect = 1.4
Identities = 30/79 (37%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 18 EGPMMGYSRDVEADWAGWTVPPGNTRGKRRARPQ-EDHAEQEIPGENPSARTPLNTR--- 73
EG G R VEAD A P R RARP+ H E + + P R
Sbjct: 340 EGRARGRHR-VEADAAD-AAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDT 397
Query: 74 EDSLPSASPPGLLHFPQLP 92
ED LPS+SP L QLP
Sbjct: 398 EDYLPSSSPHQLRPHSQLP 416
>gi|157311649 neogenin homolog 1 [Homo sapiens]
Length = 1461
Score = 30.0 bits (66), Expect = 1.4
Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 36/114 (31%)
Query: 9 VEWFPPAKGEGPMMG----YSRDVEADWAGWTVPPGNTRGKRRARPQEDHAEQEIPGENP 64
V W PP++ G + G YS DV A+ W + P G R H QE+ + P
Sbjct: 975 VNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEP--VVGNRLT-----HQIQELTLDTP 1027
Query: 65 --------------------SARTPLNTREDSLPSASPPGLLHFPQLPKGSRLP 98
RTP D +P+ G KGSRLP
Sbjct: 1028 YYFKIQARNSKGMGPMSEAVQFRTPKADSSDKMPNDQASG-----SGGKGSRLP 1076
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 30.0 bits (66), Expect = 1.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 132 SGSIPVALPGPGSAPSGWETW 152
SGS+P +PGPGS P+ W
Sbjct: 314 SGSVPAPIPGPGSLPAPAPLW 334
>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
Length = 587
Score = 29.6 bits (65), Expect = 1.8
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 10/143 (6%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDH--VCSVGPTATIRTQLRAQ 120
+P++ T E+S S S PG H P + P H P +T T L A
Sbjct: 140 SPASTTSSGVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPAS 199
Query: 121 RCSEDRQWICTS-----GSIPVAL-PGPGSAPSGWETWADLGSRAGRSQGSGL-NSSTAH 173
+ T+ GS AL PG +A S + S G + + +S+T+
Sbjct: 200 TTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDSTTSS 259
Query: 174 GRAESKTQGHVRIPRPVTASLTP 196
G E+ T+ H P T +L+P
Sbjct: 260 GIVEASTRVHSSTGSPRT-TLSP 281
>gi|239757898 PREDICTED: similar to testis expressed sequence 13A
[Homo sapiens]
Length = 652
Score = 29.6 bits (65), Expect = 1.8
Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 22/153 (14%)
Query: 35 WTVPPGNTRGKRRARPQEDHAEQEIPGENPSARTPLNTREDSLPSASPPGLLHF------ 88
WTVP G++R + E + G+N S ++E S A L F
Sbjct: 443 WTVPLGDSRSHIKEEGPEGPQRIVLQGDNRS-----YSQEGSPERAQGMATLVFSRSCKP 497
Query: 89 ---PQLPKGSRLPRTRDHVCSVGPTATIRTQLRAQRCSEDRQWICTSGSIPVALPGPGSA 145
P+ P+ + L +R H+ GP R L+ S ++ GS A G A
Sbjct: 498 EEGPERPQDTPLGDSRSHIKEEGPEGPQRIVLQGDNRSYSQE-----GSRERA---QGMA 549
Query: 146 PSGWETWADLGSRAGRSQGSGLNSSTAHGRAES 178
+ R QG+ L S +HG ES
Sbjct: 550 TLVFSRSCKPEEGPERPQGTPLGDSRSHGVRES 582
>gi|239754942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 138 ALPGPGSAPSGWETWADLGSRAGRSQGSGLNSSTAHGRAES 178
A PGP + W + LG R G S GSG + A G A S
Sbjct: 54 AAPGPDRSRHVWWSRTTLGKRGGNSTGSG-GTGAAAGAASS 93
>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
Length = 456
Score = 29.6 bits (65), Expect = 1.8
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 10/143 (6%)
Query: 63 NPSARTPLNTREDSLPSASPPGLLHFPQLPKGSRLPRTRDH--VCSVGPTATIRTQLRAQ 120
+P++ T E+S S S PG H P + P H P +T T L A
Sbjct: 34 SPASTTSSGVSEESTTSHSRPGSTHTTAFPDSTTTPGLSRHSTTSHSSPGSTDTTLLPAS 93
Query: 121 RCSEDRQWICTS-----GSIPVAL-PGPGSAPSGWETWADLGSRAGRSQGSGL-NSSTAH 173
+ T+ GS AL PG +A S + S G + + +S+T+
Sbjct: 94 TTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDSTTSS 153
Query: 174 GRAESKTQGHVRIPRPVTASLTP 196
G E+ T+ H P T +L+P
Sbjct: 154 GIVEASTRVHSSTGSPRT-TLSP 175
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,913,040
Number of Sequences: 37866
Number of extensions: 630149
Number of successful extensions: 2087
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 1978
Number of HSP's gapped (non-prelim): 239
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.