Guide to the Human Genome
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Name: LOC100289383 Sequence: fasta or formatted (149aa) NCBI GI: 239745658
Description:

PREDICTED: hypothetical protein XP_002344164

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.4         23           2
 C cysteine            2.7          4           2
 D aspartate           2.0          3           1
 E glutamate          10.7         16           2
 F phenylalanine       1.3          2           1
 G glycine            10.7         16           1
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              4.0          6           1
 L leucine             6.0          9           1
 M methionine          1.3          2           1
 N asparagine          0.7          1           1
 P proline             8.7         13           2
 Q glutamine           2.7          4           1
 R arginine           14.1         21           1
 S serine              8.7         13           3
 T threonine           4.7          7           1
 V valine              2.0          3           1
 W tryptophan          4.0          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344164 
LOC100288692          0.962   PREDICTED: hypothetical protein XP_002343084 
LOC100294070          0.958   PREDICTED: hypothetical protein 
LOC100286887          0.955   PREDICTED: hypothetical protein XP_002342631 
LOC100288609          0.955   PREDICTED: hypothetical protein XP_002344291 
LOC730275             0.566   PREDICTED: hypothetical protein 
LOC730275             0.566   PREDICTED: hypothetical protein 
LOC100292758          0.108   PREDICTED: hypothetical protein 
ZAR1                  0.063   zygote arrest 1 
CCDC71                0.045   coiled-coil domain containing 71 
LOC100129129          0.042   PREDICTED: hypothetical protein 
PNMAL1                0.035   PNMA-like 1 isoform a 
ANKRD33B              0.028   PREDICTED: ankyrin repeat domain 33B 
ANKRD33B              0.028   PREDICTED: ankyrin repeat domain 33B 
ANKRD33B              0.028   PREDICTED: ankyrin repeat domain 33B 
C1orf167              0.028   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.028   PREDICTED: chromosome 1 open reading frame 167 [Hom...
C1orf167              0.028   PREDICTED: hypothetical protein LOC284498 
LOC100287688          0.024   PREDICTED: hypothetical protein XP_002342270 
MGC50722              0.024   hypothetical protein LOC399693 
LOC100128440          0.024   PREDICTED: hypothetical protein 
LOC100128440          0.024   PREDICTED: hypothetical protein 
LOC100128440          0.024   PREDICTED: hypothetical protein 
SHROOM3               0.024   shroom family member 3 protein 
PHLDB3                0.024   pleckstrin homology-like domain, family B, member 3...
LOC402160             0.024   PREDICTED: similar to hCG18094 
LOC651856             0.024   PREDICTED: similar to hCG2023245 
KLRG2                 0.024   killer cell lectin-like receptor subfamily G, member...
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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