Guide to the Human Genome
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Name: GPRIN3 Sequence: fasta or formatted (776aa) NCBI GI: 112821690
Description:

G protein-regulated inducer of neurite outgrowth 3

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         69           4
 C cysteine            2.2         17           2
 D aspartate           4.0         31           2
 E glutamate           7.1         55           2
 F phenylalanine       1.7         13           1
 G glycine             6.1         47           2
 H histidine           1.9         15           1
 I isoleucine          2.8         22           1
 K lysine              6.1         47           3
 L leucine             6.4         50           3
 M methionine          1.8         14           1
 N asparagine          3.4         26           1
 P proline             8.8         68           2
 Q glutamine           6.6         51           1
 R arginine            5.2         40           2
 S serine             14.3        111           3
 T threonine           7.3         57           2
 V valine              4.9         38           2
 W tryptophan          0.4          3           1
 Y tyrosine            0.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G protein-regulated inducer of neurite outgrowth 3 ... 
GPRIN1                0.050   G protein-regulated inducer of neurite outgrowth 1 ...
GPRIN2                0.032   G protein-regulated inducer of neurite outgrowth 2 ...
MUC12                 0.026   PREDICTED: mucin 12 
MUC17                 0.023   mucin 17 
MUC12                 0.023   PREDICTED: mucin 12 
MUC21                 0.022   mucin 21 
MUC12                 0.020   PREDICTED: mucin 12, cell surface associated 
PRG4                  0.019   proteoglycan 4 isoform D 
PRG4                  0.019   proteoglycan 4 isoform C 
PRG4                  0.019   proteoglycan 4 isoform B 
PRG4                  0.019   proteoglycan 4 isoform A 
EIF4G1                0.019   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.019   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.019   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.019   eukaryotic translation initiation factor 4 gamma, 1 ...
MUC5B                 0.018   mucin 5, subtype B, tracheobronchial 
ZNF828                0.018   zinc finger protein 828 
MUC12                 0.017   PREDICTED: mucin 12 
EIF4G1                0.017   eukaryotic translation initiation factor 4 gamma, 1 ...
MAP1B                 0.017   microtubule-associated protein 1B 
LOC100130716          0.017   PREDICTED: similar to mucin 11 
NACA                  0.016   nascent polypeptide-associated complex alpha subuni...
MUC16                 0.015   mucin 16 
LOC100133756          0.015   PREDICTED: hypothetical protein, partial 
ATXN2L                0.015   ataxin 2 related protein isoform B 
ATXN2L                0.015   ataxin 2 related protein isoform C 
ATXN2L                0.015   ataxin 2 related protein isoform A 
ATXN2L                0.015   ataxin 2 related protein isoform D 
SRRM2                 0.015   splicing coactivator subunit SRm300 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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