Guide to the Human Genome
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Name: LOC100293335 Sequence: fasta or formatted (145aa) NCBI GI: 239754942
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         12           3
 C cysteine            0.0          0           0
 D aspartate           3.4          5           2
 E glutamate           4.1          6           1
 F phenylalanine       3.4          5           2
 G glycine            16.6         24           2
 H histidine           2.8          4           1
 I isoleucine          0.7          1           1
 K lysine              2.8          4           2
 L leucine            14.5         21           5
 M methionine          2.1          3           1
 N asparagine          2.1          3           1
 P proline             6.2          9           2
 Q glutamine           3.4          5           1
 R arginine           13.1         19           2
 S serine              8.3         12           2
 T threonine           4.1          6           2
 V valine              2.1          3           1
 W tryptophan          1.4          2           2
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289041          1.000   PREDICTED: hypothetical protein 
LOC100289041          1.000   PREDICTED: hypothetical protein XP_002342908 
LOC100292370          0.059   PREDICTED: hypothetical protein 
LOC100131851          0.052   PREDICTED: hypothetical protein 
LOC100130751          0.052   PREDICTED: hypothetical protein 
LOC100131851          0.052   PREDICTED: hypothetical protein 
BMP2K                 0.052   BMP-2 inducible kinase isoform a 
BMP2K                 0.052   BMP-2 inducible kinase isoform b 
ZNF296                0.044   zinc finger protein 296 
FLJ37078              0.044   hypothetical protein LOC222183 
KHDRBS1               0.044   KH domain containing, RNA binding, signal transductio...
C6orf174              0.037   hypothetical protein LOC387104 
FLJ31945              0.037   PREDICTED: hypothetical protein 
LOC100289661          0.037   PREDICTED: hypothetical protein 
LOC100289661          0.037   PREDICTED: hypothetical protein XP_002343723 
CDC2L5                0.037   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.037   cell division cycle 2-like 5 isoform 2 
EN2                   0.033   engrailed homeobox 2 
COIL                  0.033   coilin 
AGER                  0.033   advanced glycosylation end product-specific receptor...
FLJ31945              0.030   PREDICTED: hypothetical protein 
FLJ31945              0.030   PREDICTED: hypothetical protein 
KCNN2                 0.030   small conductance calcium-activated potassium channe...
LOC100292590          0.030   PREDICTED: hypothetical protein 
POU3F2                0.030   POU domain, class 3, transcription factor 2 
EVX2                  0.030   even-skipped homeobox 2 
SOX4                  0.030   SRY (sex determining region Y)-box 4 
LOC100291147          0.030   PREDICTED: hypothetical protein XP_002347883 
LOC100289560          0.030   PREDICTED: hypothetical protein XP_002344188 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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