Search of human proteins with 239745592

Search of human proteins with 239745592

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo
sapiens]
         (138 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo ...   303   4e-83
gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo ...   300   3e-82
gi|239756489 PREDICTED: hypothetical protein [Homo sapiens]           139   1e-33
gi|239756617 PREDICTED: hypothetical protein [Homo sapiens]           128   2e-30
gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo ...   107   3e-24
gi|4505845 phospholipase A2, group X [Homo sapiens]                    86   1e-17
gi|7657461 phospholipase A2, group IIE [Homo sapiens]                  49   2e-06
gi|145553989 phospholipase A2, group IIF [Homo sapiens]                39   0.001
gi|239915991 phospholipase A2, group IIA precursor [Homo sapiens]      37   0.005
gi|239915987 phospholipase A2, group IIA precursor [Homo sapiens]      37   0.005
gi|239915985 phospholipase A2, group IIA precursor [Homo sapiens]      37   0.005
gi|4505849 phospholipase A2, group IIA precursor [Homo sapiens]        37   0.005
gi|4505853 phospholipase A2, group V precursor [Homo sapiens]          35   0.015
gi|6912596 phospholipase A2, group IID [Homo sapiens]                  33   0.057
gi|61744471 low density lipoprotein receptor-related protein 8 i...    33   0.075
gi|65301119 low density lipoprotein receptor-related protein 8 i...    33   0.075
gi|65301164 very low density lipoprotein receptor isoform b [Hom...    33   0.075
gi|65301167 very low density lipoprotein receptor isoform a [Hom...    33   0.075
gi|4557665 insulin-like growth factor 1 receptor precursor [Homo...    33   0.098
gi|134031945 SCO-spondin [Homo sapiens]                                33   0.098
gi|149158711 hypothetical protein LOC56673 [Homo sapiens]              32   0.13 
gi|24497517 homeobox A5 [Homo sapiens]                                 32   0.17 
gi|60593036 keratin associated protein 5-3 [Homo sapiens]              32   0.17 
gi|11415040 matriptase [Homo sapiens]                                  31   0.28 
gi|4505847 phospholipase A2 group IB [Homo sapiens]                    31   0.28 
gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens]      31   0.37 
gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens]      31   0.37 
gi|93102379 low density lipoprotein-related protein 1B precursor...    30   0.49 
gi|123173777 keratin associated protein 5-8 [Homo sapiens]             30   0.49 
gi|126012573 low density lipoprotein-related protein 2 [Homo sap...    30   0.63 

>gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo
           sapiens]
          Length = 138

 Score =  303 bits (775), Expect = 4e-83
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTGAEEAGCSPKTERY 60
           MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTGAEEAGCSPKTERY
Sbjct: 1   MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTGAEEAGCSPKTERY 60

Query: 61  SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE 120
           SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE
Sbjct: 61  SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE 120

Query: 121 ILPEYGVINPAVHYCTLP 138
           ILPEYGVINPAVHYCTLP
Sbjct: 121 ILPEYGVINPAVHYCTLP 138


>gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo
           sapiens]
          Length = 138

 Score =  300 bits (767), Expect = 3e-82
 Identities = 137/138 (99%), Positives = 137/138 (99%)

Query: 1   MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTGAEEAGCSPKTERY 60
           MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYT AEEAGCSPKTERY
Sbjct: 1   MPPLCFPRPDHLMEVPLVLGPSLSTCYQRGQLYTRECCHGHDCCYTRAEEAGCSPKTERY 60

Query: 61  SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE 120
           SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE
Sbjct: 61  SWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHRE 120

Query: 121 ILPEYGVINPAVHYCTLP 138
           ILPEYGVINPAVHYCTLP
Sbjct: 121 ILPEYGVINPAVHYCTLP 138


>gi|239756489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 77

 Score =  139 bits (349), Expect = 1e-33
 Identities = 65/72 (90%), Positives = 69/72 (95%)

Query: 67  QSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYG 126
           + ++ V+CEKPDLTNSSQLTPSEAEDCSSSD SCVRPDSQSEADAGTETISHREILPEYG
Sbjct: 6   RKLILVQCEKPDLTNSSQLTPSEAEDCSSSDFSCVRPDSQSEADAGTETISHREILPEYG 65

Query: 127 VINPAVHYCTLP 138
           VINPAVHYCTLP
Sbjct: 66  VINPAVHYCTLP 77


>gi|239756617 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 63

 Score =  128 bits (321), Expect = 2e-30
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 78  DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 137
           DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL
Sbjct: 3   DLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTL 62

Query: 138 P 138
           P
Sbjct: 63  P 63


>gi|239745465 PREDICTED: hypothetical protein XP_002343498 [Homo
           sapiens]
          Length = 58

 Score =  107 bits (267), Expect = 3e-24
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 89  EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 138
           EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP
Sbjct: 9   EAEDCSSSDSSCVRPDSQSEADAGTETISHREILPEYGVINPAVHYCTLP 58


>gi|4505845 phospholipase A2, group X [Homo sapiens]
          Length = 165

 Score = 85.5 bits (210), Expect = 1e-17
 Identities = 34/35 (97%), Positives = 34/35 (97%)

Query: 37  CCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLC 71
           CCHGHDCCYT AEEAGCSPKTERYSWQCVNQSVLC
Sbjct: 84  CCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLC 118


>gi|7657461 phospholipase A2, group IIE [Homo sapiens]
          Length = 142

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 37 CCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLC 71
          CCH HDCCY   E+ GC PK E+Y +    + + C
Sbjct: 61 CCHAHDCCYGRLEKLGCEPKLEKYLFSVSERGIFC 95


>gi|145553989 phospholipase A2, group IIF [Homo sapiens]
          Length = 211

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 37  CCHGHDCCYTGAEEAGCSPKTERYSWQCVNQS-VLCVRCEKPD 78
           CCH HDCCY    + GC P  + Y     N + ++C    K +
Sbjct: 106 CCHAHDCCYQELFDQGCHPYVDHYDHTIENNTEIVCSDLNKTE 148


>gi|239915991 phospholipase A2, group IIA precursor [Homo sapiens]
          Length = 144

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 34 TRECCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLCVR 73
          T  CC  HDCCY   E+ GC  K   Y +      + C +
Sbjct: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99


>gi|239915987 phospholipase A2, group IIA precursor [Homo sapiens]
          Length = 144

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 34 TRECCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLCVR 73
          T  CC  HDCCY   E+ GC  K   Y +      + C +
Sbjct: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99


>gi|239915985 phospholipase A2, group IIA precursor [Homo sapiens]
          Length = 144

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 34 TRECCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLCVR 73
          T  CC  HDCCY   E+ GC  K   Y +      + C +
Sbjct: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99


>gi|4505849 phospholipase A2, group IIA precursor [Homo sapiens]
          Length = 144

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 34 TRECCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLCVR 73
          T  CC  HDCCY   E+ GC  K   Y +      + C +
Sbjct: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99


>gi|4505853 phospholipase A2, group V precursor [Homo sapiens]
          Length = 138

 Score = 35.4 bits (80), Expect = 0.015
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 37 CCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLC 71
          CC  HD CY   EE GC+ +T+ Y ++     V C
Sbjct: 63 CCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTC 97


>gi|6912596 phospholipase A2, group IID [Homo sapiens]
          Length = 145

 Score = 33.5 bits (75), Expect = 0.057
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 37 CCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLC 71
          CC  HDCCY   +  GCS   + Y +     ++ C
Sbjct: 63 CCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHC 97


>gi|61744471 low density lipoprotein receptor-related protein 8
           isoform 1 precursor [Homo sapiens]
          Length = 963

 Score = 33.1 bits (74), Expect = 0.075
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 38  CHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLCV--RCEKPDLTNSSQLTPSEAEDCSS 95
           C G   C  GA+EAGC+     + +QC N+S L     C+  D         S+   C  
Sbjct: 148 CDGEKDCEGGADEAGCATLCAPHEFQCGNRSCLAAVFVCDGDDDCGDG----SDERGC-- 201

Query: 96  SDSSCVRPDSQSEADAGTETISHR 119
           +D +C   + +   D G   I  R
Sbjct: 202 ADPACGPREFRCGGDGGGACIPER 225



 Score = 28.9 bits (63), Expect = 1.4
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 17/94 (18%)

Query: 38  CHGHDCCYTGAEEAGCSPKTERYS-------------WQCVNQSVLCVRCEKPDLTNSSQ 84
           C   D C   ++E  C  KT   S             W+C  +       ++ + T + Q
Sbjct: 66  CDEDDDCLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEECPDGSDESEATCTKQ 125

Query: 85  LTPSEAEDCSSSDSSCV----RPDSQSEADAGTE 114
           + P+E   C  +   CV    R D + + + G +
Sbjct: 126 VCPAEKLSCGPTSHKCVPASWRCDGEKDCEGGAD 159


>gi|65301119 low density lipoprotein receptor-related protein 8
           isoform 4 precursor [Homo sapiens]
          Length = 904

 Score = 33.1 bits (74), Expect = 0.075
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 38  CHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLCV--RCEKPDLTNSSQLTPSEAEDCSS 95
           C G   C  GA+EAGC+     + +QC N+S L     C+  D         S+   C  
Sbjct: 148 CDGEKDCEGGADEAGCATLCAPHEFQCGNRSCLAAVFVCDGDDDCGDG----SDERGC-- 201

Query: 96  SDSSCVRPDSQSEADAGTETISHR 119
           +D +C   + +   D G   I  R
Sbjct: 202 ADPACGPREFRCGGDGGGACIPER 225



 Score = 28.9 bits (63), Expect = 1.4
 Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 17/94 (18%)

Query: 38  CHGHDCCYTGAEEAGCSPKTERYS-------------WQCVNQSVLCVRCEKPDLTNSSQ 84
           C   D C   ++E  C  KT   S             W+C  +       ++ + T + Q
Sbjct: 66  CDEDDDCLDHSDEDDCPKKTCADSDFTCDNGHCIHERWKCDGEEECPDGSDESEATCTKQ 125

Query: 85  LTPSEAEDCSSSDSSCV----RPDSQSEADAGTE 114
           + P+E   C  +   CV    R D + + + G +
Sbjct: 126 VCPAEKLSCGPTSHKCVPASWRCDGEKDCEGGAD 159


>gi|65301164 very low density lipoprotein receptor isoform b [Homo
           sapiens]
          Length = 845

 Score = 33.1 bits (74), Expect = 0.075
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 17  LVLGPSLSTCYQRGQLYTRECCHGHDCCYTGAEEAGCSPKT-ERYSWQCVNQSVLCVRCE 75
           +   P   TC     +     C+G D C  G++E  C+P T   + +QC   S + +   
Sbjct: 152 ITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWV 211

Query: 76  KPDLTNSSQLTPSEAEDC 93
             D  + S  +    E C
Sbjct: 212 CDDDADCSDQSDESLEQC 229


>gi|65301167 very low density lipoprotein receptor isoform a [Homo
           sapiens]
          Length = 873

 Score = 33.1 bits (74), Expect = 0.075
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 17  LVLGPSLSTCYQRGQLYTRECCHGHDCCYTGAEEAGCSPKT-ERYSWQCVNQSVLCVRCE 75
           +   P   TC     +     C+G D C  G++E  C+P T   + +QC   S + +   
Sbjct: 152 ITCSPDEFTCSSGRCISRNFVCNGQDDCSDGSDELDCAPPTCGAHEFQCSTSSCIPISWV 211

Query: 76  KPDLTNSSQLTPSEAEDC 93
             D  + S  +    E C
Sbjct: 212 CDDDADCSDQSDESLEQC 229


>gi|4557665 insulin-like growth factor 1 receptor precursor [Homo
           sapiens]
          Length = 1367

 Score = 32.7 bits (73), Expect = 0.098
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 20/103 (19%)

Query: 24  STCYQRGQLYTRECCH-----------GHDCC-------YTGAEEAGCSPKTERY-SWQC 64
           STC +R      ECCH               C       Y G     C P T R+  W+C
Sbjct: 217 STCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRC 276

Query: 65  VNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQS 107
           V++   C      + ++S      + E      S  +R  SQS
Sbjct: 277 VDRD-FCANILSAESSDSEGFVIHDGECMQECPSGFIRNGSQS 318


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 32.7 bits (73), Expect = 0.098
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 12/107 (11%)

Query: 16   PLVLGPSLSTCYQRGQLYTRECCHGHDCCYTGAEEAGCSPKTERY------SWQCVNQSV 69
            P+  GP  + C   G +   + C G + C  G++E  C+     +       W       
Sbjct: 2388 PVQCGPGQTPCEVLGCVEQAQVCDGREDCLDGSDERHCARNLLMWLPSLPALWAASTVPF 2447

Query: 70   LCVRCEKPDLTNSSQL-TPSE----AEDCSSSDSSC-VRPDSQSEAD 110
            +      P L  S  L +PS+    + +C S++  C +RPD Q  +D
Sbjct: 2448 MMPTMALPGLPASRALCSPSQLSCGSGECLSAERRCDLRPDCQDGSD 2494


>gi|149158711 hypothetical protein LOC56673 [Homo sapiens]
          Length = 467

 Score = 32.3 bits (72), Expect = 0.13
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 19/123 (15%)

Query: 7   PRPDHLMEVPLVLGP---SLSTCYQRGQLYTRECCHGHDCCYTGAEE--AGCSPKTERYS 61
           PRP H      +LGP    ++        +    CH H CC    +    GC P    + 
Sbjct: 234 PRPLHWAPCCSLLGPITGRITNELPPDAPFLCPLCHHHACCQLLCQGCLCGCPPCGTTW- 292

Query: 62  WQCVNQSVLCVRCEKPDLTNSSQLTPSEAED------------CSSSDSSCVRPDSQSEA 109
           W     S +  R E P+L  ++QL P E                SSS SSC +   +++ 
Sbjct: 293 WPLTRTSEVMAR-ELPELEPTAQLLPLEGPKEEKVAMHAPLAVSSSSSSSCEQDGVENDL 351

Query: 110 DAG 112
           + G
Sbjct: 352 EMG 354


>gi|24497517 homeobox A5 [Homo sapiens]
          Length = 270

 Score = 32.0 bits (71), Expect = 0.17
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 48  AEEAGCSPKTERYSWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQS 107
           A  A  +P   RYS     Q        +PD    S + PS   D      + +   S +
Sbjct: 74  AASASAAPAEPRYS-----QPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGA 128

Query: 108 EADAGTETISHRE 120
            ADAG+  IS RE
Sbjct: 129 SADAGSTHISSRE 141


>gi|60593036 keratin associated protein 5-3 [Homo sapiens]
          Length = 238

 Score = 32.0 bits (71), Expect = 0.17
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 35  RECCHGHDCCYTGAEEAGCSPKTERYSW--QCVNQSVLCVRCEKPDLTNSSQLTPSEAED 92
           + CC    CC      +GC     + S    C +QS  C  C       SS    S  + 
Sbjct: 162 KPCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKP 221

Query: 93  CSSSDSSCV 101
           CSS  S CV
Sbjct: 222 CSSQSSCCV 230


>gi|11415040 matriptase [Homo sapiens]
          Length = 855

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 12/83 (14%)

Query: 38  CHGHDCCYTGAEEAGCSPKTE-----RYSWQCVNQSVLCVRCEKPDLTNSSQLTP-SEAE 91
           C+G D C  G++EA C PK       +++++C+N   LC+    P+       +  S+ +
Sbjct: 544 CNGKDDCGDGSDEASC-PKVNVVTCTKHTYRCLNG--LCLSKGNPECDGKEDCSDGSDEK 600

Query: 92  DCSSSDSSCVRPDSQSEADAGTE 114
           DC     S  R   Q+    GT+
Sbjct: 601 DCDCGLRSFTR---QARVVGGTD 620


>gi|4505847 phospholipase A2 group IB [Homo sapiens]
          Length = 148

 Score = 31.2 bits (69), Expect = 0.28
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 36  ECCHGHDCCYTGAEEAGC------SPKTERYSWQCVNQSVLC 71
           +CC  HD CY  A++         +P T  YS+ C   ++ C
Sbjct: 65  KCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITC 106


>gi|125988395 jumonji domain containing 6 isoform 1 [Homo sapiens]
          Length = 414

 Score = 30.8 bits (68), Expect = 0.37
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 55  PKTERYSWQCVNQS--VLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAG 112
           PK  R  ++ + Q    L V  +  DL  S+ +    + D SSS SS    DS SE ++G
Sbjct: 306 PKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSS-SSDSDSECESG 364

Query: 113 TE 114
           +E
Sbjct: 365 SE 366


>gi|125988389 jumonji domain containing 6 isoform 2 [Homo sapiens]
          Length = 403

 Score = 30.8 bits (68), Expect = 0.37
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 55  PKTERYSWQCVNQS--VLCVRCEKPDLTNSSQLTPSEAEDCSSSDSSCVRPDSQSEADAG 112
           PK  R  ++ + Q    L V  +  DL  S+ +    + D SSS SS    DS SE ++G
Sbjct: 306 PKLSRKWYRILKQEHPELAVLADSVDLQESTGIASDSSSDSSSSSSSS-SSDSDSECESG 364

Query: 113 TE 114
           +E
Sbjct: 365 SE 366


>gi|93102379 low density lipoprotein-related protein 1B precursor
            [Homo sapiens]
          Length = 4599

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 15/82 (18%)

Query: 38   CHGHDCCYTGAEEAGCS-------PKTERYSW---QCVNQSVLC---VRCEKPDLTN--S 82
            C G   C  G++E GC+        KT+   W   +C+N++ +C   + CE     +   
Sbjct: 1073 CDGEKDCEDGSDEKGCNGTIRLCDHKTKFSCWSTGRCINKAWVCDGDIDCEDQSDEDDCD 1132

Query: 83   SQLTPSEAEDCSSSDSSCVRPD 104
            S L       C++  S C++P+
Sbjct: 1133 SFLCGPPKHPCANDTSVCLQPE 1154



 Score = 27.3 bits (59), Expect = 4.1
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 38   CHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLCVRCEKPDLTNSSQLTPSEAEDCS--S 95
            C GH+ C  G +E  C P     S  C ++  +C      D   S+ L  +   DC+  S
Sbjct: 3572 CDGHEDCKYGEDEKSCEPA----SPTCSSREYICA----SDGCISASLKCNGEYDCADGS 3623

Query: 96   SDSSCV 101
             +  CV
Sbjct: 3624 DEMDCV 3629


>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
          Length = 187

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 35  RECCHGHDCCYTGAEEAGCSPKTERYSW--QCVNQSVLCVRCEKPDLTNSSQLTPSEAED 92
           + CC    CC   +  +GC     + S    C +QS  C  C       SS    S  + 
Sbjct: 111 KPCCSQSSCCKPCSCSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCCQSSCCKP 170

Query: 93  CSSSDSSCV 101
           C S  S CV
Sbjct: 171 CCSQSSCCV 179



 Score = 28.9 bits (63), Expect = 1.4
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 16/84 (19%)

Query: 20  GPSLSTCYQRGQLYTRECCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLCVRCEKPDL 79
           G S  +CY       + CC    C  +  + + C P        C +QS  C  C     
Sbjct: 84  GCSQCSCY-------KPCCCSSGCGSSCCQSSCCKP--------CCSQSSCCKPCSCSSG 128

Query: 80  TNSSQLTPSEAEDCSSSDSSCVRP 103
             SS    S  + C  S SSC +P
Sbjct: 129 CGSSCCQSSCCKPC-CSQSSCCKP 151


>gi|126012573 low density lipoprotein-related protein 2 [Homo sapiens]
          Length = 4655

 Score = 30.0 bits (66), Expect = 0.63
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 38   CHGH-DCCYTGAEEAGCSPKTERYSW------QCVNQSVLCVRCEKPDLTNSSQLTPSEA 90
            C GH DC Y   E   C PKT   S+       C++++ LC R       +  +  P++ 
Sbjct: 1250 CDGHPDCLYGSDEHNACVPKTCPSSYFHCDNGNCIHRAWLCDRDNDCGDMSDEKDCPTQP 1309

Query: 91   EDCSSSDSSCV 101
              C S    C+
Sbjct: 1310 FRCPSWQWQCL 1320



 Score = 28.1 bits (61), Expect = 2.4
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 38   CHGHDCCYTGAEEAGCSPKT--ERYSWQCVNQSVLCVRCE---KPDLTNSSQLTPSEAED 92
            C+G D C   ++E GC  +T      ++C N   + +R +   + D  ++S        +
Sbjct: 3699 CNGVDDCRDNSDEQGCEERTCHPVGDFRCKNHHCIPLRWQCDGQNDCGDNSDEENCAPRE 3758

Query: 93   CSSSDSSCV 101
            C+ S+  CV
Sbjct: 3759 CTESEFRCV 3767



 Score = 26.2 bits (56), Expect = 9.2
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 21   PSLSTCYQRGQLYTRECCHGHDCCYTGAEEA--GCSPKTER----YSWQCVN 66
            P+   C     +Y+ E C+G D C  G +E    C   T +    Y ++C N
Sbjct: 3886 PNRFRCDNNRCIYSHEVCNGVDDCGDGTDETEEHCRKPTPKPCTEYEYKCGN 3937


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,641,230
Number of Sequences: 37866
Number of extensions: 302108
Number of successful extensions: 1107
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 139
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.