Guide to the Human Genome
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Name: LOC100292160 Sequence: fasta or formatted (77aa) NCBI GI: 239756489
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2          4           1
 C cysteine            5.2          4           1
 D aspartate           6.5          5           1
 E glutamate           9.1          7           1
 F phenylalanine       1.3          1           1
 G glycine             2.6          2           1
 H histidine           3.9          3           1
 I isoleucine          6.5          5           1
 K lysine              2.6          2           1
 L leucine             7.8          6           1
 M methionine          1.3          1           1
 N asparagine          2.6          2           1
 P proline             9.1          7           1
 Q glutamine           5.2          4           1
 R arginine            3.9          3           1
 S serine             13.0         10           3
 T threonine           6.5          5           1
 V valine              5.2          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290505          0.832   PREDICTED: hypothetical protein XP_002347705 
LOC100289399          0.832   PREDICTED: hypothetical protein XP_002344154 
LOC100292832          0.730   PREDICTED: hypothetical protein 
LOC100288315          0.584   PREDICTED: hypothetical protein XP_002343498 
ANKS3                 0.029   ankyrin repeat and sterile alpha motif domain contai...
SRCAP                 0.029   Snf2-related CBP activator protein 
MAST2                 0.022   microtubule associated serine/threonine kinase 2 [H...
CAST                  0.022   calpastatin isoform j 
CAST                  0.022   calpastatin isoform i 
CAST                  0.022   calpastatin isoform h 
CAST                  0.022   calpastatin isoform g 
CAST                  0.022   calpastatin isoform f 
CAST                  0.022   calpastatin isoform b 
CAST                  0.022   calpastatin isoform a 
XRN1                  0.022   5'-3' exoribonuclease 1 isoform b 
XRN1                  0.022   5'-3' exoribonuclease 1 isoform a 
LOC100131509          0.015   PREDICTED: similar to inward rectifying K+ channel ...
LOC100131509          0.015   PREDICTED: similar to inward rectifying K+ channel ...
LOC100290070          0.015   PREDICTED: hypothetical protein XP_002347768 
PCDHGC5               0.015   protocadherin gamma subfamily C, 5 isoform 2 precurs...
PCDHGC5               0.015   protocadherin gamma subfamily C, 5 isoform 1 precurs...
PADI1                 0.015   peptidylarginine deiminase type I 
JMJD6                 0.015   jumonji domain containing 6 isoform 1 
JMJD6                 0.015   jumonji domain containing 6 isoform 2 
OR13C8                0.015   olfactory receptor, family 13, subfamily C, member 8...
LRRC37A3              0.015   leucine rich repeat containing 37, member A3 
HOXA5                 0.007   homeobox A5 
DST                   0.007   dystonin isoform 4 
DST                   0.007   dystonin isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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