Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292832 Sequence: fasta or formatted (63aa) NCBI GI: 239756617
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9          5           1
 C cysteine            4.8          3           1
 D aspartate           7.9          5           1
 E glutamate           9.5          6           1
 F phenylalanine       0.0          0           0
 G glycine             3.2          2           1
 H histidine           3.2          2           1
 I isoleucine          4.8          3           1
 K lysine              0.0          0           0
 L leucine             6.3          4           1
 M methionine          1.6          1           1
 N asparagine          3.2          2           1
 P proline             7.9          5           1
 Q glutamine           3.2          2           1
 R arginine            3.2          2           1
 S serine             17.5         11           3
 T threonine           7.9          5           1
 V valine              4.8          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290505          0.972   PREDICTED: hypothetical protein XP_002347705 
LOC100289399          0.972   PREDICTED: hypothetical protein XP_002344154 
LOC100292160          0.943   PREDICTED: hypothetical protein 
LOC100288315          0.774   PREDICTED: hypothetical protein XP_002343498 
MAST2                 0.047   microtubule associated serine/threonine kinase 2 [H...
FCRL3                 0.019   Fc receptor-like 3 precursor 
JMJD6                 0.019   jumonji domain containing 6 isoform 1 
JMJD6                 0.019   jumonji domain containing 6 isoform 2 
ANKS3                 0.019   ankyrin repeat and sterile alpha motif domain contai...
BRDT                  0.019   testis-specific bromodomain protein 
BRDT                  0.019   testis-specific bromodomain protein 
MKNK1                 0.009   MAP kinase-interacting serine/threonine kinase 1 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press