Guide to the Human Genome
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Name: C11orf16 Sequence: fasta or formatted (467aa) NCBI GI: 149158711
Description:

hypothetical protein LOC56673

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         39           2
 C cysteine            4.1         19           2
 D aspartate           2.8         13           1
 E glutamate           7.1         33           2
 F phenylalanine       1.7          8           1
 G glycine             7.3         34           2
 H histidine           3.0         14           3
 I isoleucine          1.9          9           1
 K lysine              5.4         25           2
 L leucine            10.7         50           2
 M methionine          1.9          9           1
 N asparagine          2.1         10           1
 P proline            10.7         50           2
 Q glutamine           5.1         24           3
 R arginine            5.8         27           2
 S serine              6.4         30           7
 T threonine           5.1         24           2
 V valine              5.6         26           2
 W tryptophan          3.2         15           2
 Y tyrosine            1.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC56673 
RNF207                0.011   ring finger protein 207 
TNRC18                0.009   trinucleotide repeat containing 18 
LOC100290505          0.008   PREDICTED: hypothetical protein XP_002347705 
CNTN2                 0.007   contactin 2 precursor 
LOC100289399          0.007   PREDICTED: hypothetical protein XP_002344154 
NCAN                  0.007   chondroitin sulfate proteoglycan 3 
RELT                  0.007   RELT tumor necrosis factor receptor precursor 
RELT                  0.007   RELT tumor necrosis factor receptor precursor 
KIAA1529              0.006   hypothetical protein LOC57653 
MYO15A                0.006   myosin XV 
SLC34A2               0.006   solute carrier family 34 (sodium phosphate), member...
PCK2                  0.006   mitochondrial phosphoenolpyruvate carboxykinase 2 is...
FGB                   0.005   fibrinogen, beta chain preproprotein 
KCP                   0.005   cysteine rich BMP regulator 2 isoform 1 
WNK2                  0.005   WNK lysine deficient protein kinase 2 
LOC100293513          0.005   PREDICTED: hypothetical protein 
ZNF687                0.005   zinc finger protein 687 
LOC100287070          0.004   PREDICTED: hypothetical protein XP_002343319 
CNTN4                 0.004   contactin 4 isoform c precursor 
CNTN4                 0.004   contactin 4 isoform b precursor 
CNTN4                 0.004   contactin 4 isoform a precursor 
CHIC2                 0.004   cysteine-rich hydrophobic domain 2 
MAP4K1                0.004   mitogen-activated protein kinase kinase kinase kina...
MAP4K1                0.004   mitogen-activated protein kinase kinase kinase kinase...
YSK4                  0.004   Yeast Sps1/Ste20-related kinase 4 isoform 1 
BAHCC1                0.004   BAH domain and coiled-coil containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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