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Search of human proteins with 239745467
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745467 PREDICTED: hypothetical protein XP_002343499 [Homo
sapiens]
(393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745467 PREDICTED: hypothetical protein XP_002343499 [Homo ... 798 0.0
gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo ... 725 0.0
gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo ... 725 0.0
gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo ... 438 e-123
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 39 0.011
gi|188536004 zinc finger protein 469 [Homo sapiens] 36 0.069
gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens] 35 0.15
gi|239756892 PREDICTED: hypothetical protein [Homo sapiens] 34 0.26
gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo ... 34 0.26
gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo ... 34 0.26
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 33 0.45
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 33 0.45
gi|194353992 amyloid beta A4 precursor protein-binding, family A... 32 0.76
gi|22035550 amyloid beta A4 precursor protein-binding, family A,... 32 0.76
gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo sap... 32 0.76
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 32 0.99
gi|118572599 formin homology 2 domain containing 1 [Homo sapiens] 32 0.99
gi|109633022 mucosal vascular addressin cell adhesion molecule 1... 32 1.3
gi|239753797 PREDICTED: hypothetical protein [Homo sapiens] 32 1.3
gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo ... 32 1.3
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 1.3
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 31 1.7
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 31 2.2
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 31 2.2
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 31 2.2
gi|57864582 hornerin [Homo sapiens] 30 2.9
gi|239752280 PREDICTED: similar to family with sequence similari... 30 2.9
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 30 2.9
gi|24308326 BR serine/threonine kinase 1 [Homo sapiens] 30 2.9
gi|210032463 family with sequence similarity 48, member B2 [Homo... 30 2.9
>gi|239745467 PREDICTED: hypothetical protein XP_002343499 [Homo
sapiens]
Length = 393
Score = 798 bits (2060), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV 60
MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV
Sbjct: 1 MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV 60
Query: 61 DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG 120
DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG
Sbjct: 61 DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG 120
Query: 121 QALAEGTDAQLHHDRWLFWLSQFAKRPGAWHSFTSKASPSYLHWRVCMLNVVLQVAHEHE 180
QALAEGTDAQLHHDRWLFWLSQFAKRPGAWHSFTSKASPSYLHWRVCMLNVVLQVAHEHE
Sbjct: 121 QALAEGTDAQLHHDRWLFWLSQFAKRPGAWHSFTSKASPSYLHWRVCMLNVVLQVAHEHE 180
Query: 181 VAGLVPARVQSMVVDVAEDGTCADPVALHTLDDGTHLGLILQVLHELKLFQALGDITNLH 240
VAGLVPARVQSMVVDVAEDGTCADPVALHTLDDGTHLGLILQVLHELKLFQALGDITNLH
Sbjct: 181 VAGLVPARVQSMVVDVAEDGTCADPVALHTLDDGTHLGLILQVLHELKLFQALGDITNLH 240
Query: 241 GITDGPDKNGHSHSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLR 300
GITDGPDKNGHSHSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLR
Sbjct: 241 GITDGPDKNGHSHSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLR 300
Query: 301 PDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPD 360
PDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPD
Sbjct: 301 PDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPD 360
Query: 361 SGNAEREGGSSRHFREAPTNYTGRLQLPVAFAP 393
SGNAEREGGSSRHFREAPTNYTGRLQLPVAFAP
Sbjct: 361 SGNAEREGGSSRHFREAPTNYTGRLQLPVAFAP 393
>gi|239751053 PREDICTED: hypothetical protein XP_002347688 [Homo
sapiens]
Length = 441
Score = 725 bits (1871), Expect = 0.0
Identities = 377/441 (85%), Positives = 381/441 (86%), Gaps = 48/441 (10%)
Query: 1 MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV 60
MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV
Sbjct: 1 MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV 60
Query: 61 DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG 120
DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG
Sbjct: 61 DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG 120
Query: 121 QALAEGTDAQLHH---------------------DRWLFWLSQFAKRPGAWHSFTSKASP 159
QALAEGTDAQLHH DRWLFWLSQFAKRPGAWHSFTSKASP
Sbjct: 121 QALAEGTDAQLHHGGLQDAGNWERPSVYLNLHRPDRWLFWLSQFAKRPGAWHSFTSKASP 180
Query: 160 SYLHWRVCMLNVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTCA----------DPVALH 209
SYLHWRVCMLNVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTC D + L
Sbjct: 181 SYLHWRVCMLNVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTCCQVGVVVIERGDDIELD 240
Query: 210 TLDDGT-------HLGLILQVLH----------ELKLFQALGDITNLHGITDGPDKNGHS 252
+D +L LQ L+ ELKLFQALGDITNLHGITDGPDKNGHS
Sbjct: 241 LDNDALSQVVFRCNLNQQLQQLNLGSTRGPESWELKLFQALGDITNLHGITDGPDKNGHS 300
Query: 253 HSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGH 312
HSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGH
Sbjct: 301 HSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGH 360
Query: 313 AKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSR 372
AKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSR
Sbjct: 361 AKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSR 420
Query: 373 HFREAPTNYTGRLQLPVAFAP 393
HFREAPTNYTGRLQLPVAFAP
Sbjct: 421 HFREAPTNYTGRLQLPVAFAP 441
>gi|239745478 PREDICTED: hypothetical protein XP_002343503 [Homo
sapiens]
Length = 441
Score = 725 bits (1871), Expect = 0.0
Identities = 377/441 (85%), Positives = 381/441 (86%), Gaps = 48/441 (10%)
Query: 1 MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV 60
MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV
Sbjct: 1 MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV 60
Query: 61 DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG 120
DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG
Sbjct: 61 DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG 120
Query: 121 QALAEGTDAQLHH---------------------DRWLFWLSQFAKRPGAWHSFTSKASP 159
QALAEGTDAQLHH DRWLFWLSQFAKRPGAWHSFTSKASP
Sbjct: 121 QALAEGTDAQLHHGGLQDAGNWERPSVYLNLHRPDRWLFWLSQFAKRPGAWHSFTSKASP 180
Query: 160 SYLHWRVCMLNVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTCA----------DPVALH 209
SYLHWRVCMLNVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTC D + L
Sbjct: 181 SYLHWRVCMLNVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTCCQVGVVVIERGDDIELD 240
Query: 210 TLDDGT-------HLGLILQVLH----------ELKLFQALGDITNLHGITDGPDKNGHS 252
+D +L LQ L+ ELKLFQALGDITNLHGITDGPDKNGHS
Sbjct: 241 LDNDALSQVVFRCNLNQQLQQLNLGSTRGPESWELKLFQALGDITNLHGITDGPDKNGHS 300
Query: 253 HSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGH 312
HSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGH
Sbjct: 301 HSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGH 360
Query: 313 AKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSR 372
AKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSR
Sbjct: 361 AKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSR 420
Query: 373 HFREAPTNYTGRLQLPVAFAP 393
HFREAPTNYTGRLQLPVAFAP
Sbjct: 421 HFREAPTNYTGRLQLPVAFAP 441
>gi|239756526 PREDICTED: hypothetical protein XP_002344924 [Homo
sapiens]
Length = 503
Score = 438 bits (1127), Expect = e-123
Identities = 225/248 (90%), Positives = 226/248 (91%), Gaps = 21/248 (8%)
Query: 1 MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV 60
MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV
Sbjct: 1 MALEAATTCSRMDSGGPERQGLSLAHAQLVVELLADHASAGIALMGGHVGDLQEHGRHQV 60
Query: 61 DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG 120
DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG
Sbjct: 61 DTLQQLQVDVQVEGDLTAPLHLLLLLVALLQAAQQQALAQKLLGSATRLDVQQGVVCVLG 120
Query: 121 QALAEGTDAQLHH---------------------DRWLFWLSQFAKRPGAWHSFTSKASP 159
QALAEGTDAQLHH DRWLFWLSQFAKRPGAWHSFTSKASP
Sbjct: 121 QALAEGTDAQLHHGGLQDAGNWERPSVYLNLHRPDRWLFWLSQFAKRPGAWHSFTSKASP 180
Query: 160 SYLHWRVCMLNVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTCADPVALHTLDDGTHLGL 219
SYLHWRVCMLNVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTCADPVALHTLDDGTHLGL
Sbjct: 181 SYLHWRVCMLNVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTCADPVALHTLDDGTHLGL 240
Query: 220 ILQVLHEL 227
ILQVLH +
Sbjct: 241 ILQVLHNI 248
Score = 352 bits (903), Expect = 3e-97
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 226 ELKLFQALGDITNLHGITDGPDKNGHSHSPRNSLFAIVASDRFGDELLPGQGRLGLAVRT 285
ELKLFQALGDITNLHGITDGPDKNGHSHSPRNSLFAIVASDRFGDELLPGQGRLGLAVRT
Sbjct: 336 ELKLFQALGDITNLHGITDGPDKNGHSHSPRNSLFAIVASDRFGDELLPGQGRLGLAVRT 395
Query: 286 GGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPK 345
GGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPK
Sbjct: 396 GGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPK 455
Query: 346 NTNQLSPRVTPQGPDSGNAEREGGSSRHFREAPTNYTGRLQLPVAFAP 393
NTNQLSPRVTPQGPDSGNAEREGGSSRHFREAPTNYTGRLQLPVAFAP
Sbjct: 456 NTNQLSPRVTPQGPDSGNAEREGGSSRHFREAPTNYTGRLQLPVAFAP 503
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 38.5 bits (88), Expect = 0.011
Identities = 43/139 (30%), Positives = 52/139 (37%), Gaps = 29/139 (20%)
Query: 275 GQGRLGLAVRTGGEKPRHG--------DGAEVLRPDLRGSQGVTGHAKRPEPT----PPD 322
G+ R R GG PR DG DLR S+ + P P PP
Sbjct: 103 GRPRFLRGTRGGGGGPRRSPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPK 162
Query: 323 AQPLTGPTRTSTWVSHHEA---------RGPKNTNQLSPRVTPQ-GP-DSGNAEREGGSS 371
+GP R+S A GP L PR P GP D G + R+G SS
Sbjct: 163 RAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSS 222
Query: 372 RHFRE------APTNYTGR 384
R +RE +P YT R
Sbjct: 223 RDYREPRGFAPSPGEYTHR 241
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 35.8 bits (81), Expect = 0.069
Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 40/145 (27%)
Query: 289 KPRHGDGAEVLRPDLRGSQGVTGHAKRPEP-TPPDAQPLTGPTR---------------- 331
+PR E+ P LRG + KR P TPP PL P+R
Sbjct: 64 QPRQARDGELKPPSLRGQAPSSTPGKRGSPQTPPGRSPLQAPSRLAGRAEGSPPQRYILG 123
Query: 332 -TSTWVSHHEARGPKNTN----QLSPRVTPQGPDSGNAEREG-------------GSSRH 373
S+ P+N QL TPQGP +G R G G R
Sbjct: 124 IASSRTKPTLDETPENPQLEAAQLPEVDTPQGPGTGAPLRPGLPRTEAQPAAEELGFHRC 183
Query: 374 FREAP-----TNYTGRLQLPVAFAP 393
F+E P TNYT P AP
Sbjct: 184 FQEPPSSFTSTNYTSPSATPRPPAP 208
>gi|9966903 mannosidase, alpha, class 1C, member 1 [Homo sapiens]
Length = 630
Score = 34.7 bits (78), Expect = 0.15
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 300 RPDLRGSQGVTGHA----KRPEPTPPDAQPLTGPTRTSTWVSHHEARGP-KNTNQLSPR- 353
+P L + GHA + P P P A P G S+W S +G + T PR
Sbjct: 60 QPGLEVVAEIAGHAPAREQEPPPNPAPAAPAPGEDDPSSWASPRRRKGGLRRTRPTGPRE 119
Query: 354 -VTPQGPDSGNAEREGGSSRHFREAPTNYTGRLQLPV 389
T +S A R G FR + RL+ PV
Sbjct: 120 EATAARGNSIPASRPGDEGVPFRFDFNAFRSRLRHPV 156
>gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 576
Score = 33.9 bits (76), Expect = 0.26
Identities = 44/166 (26%), Positives = 56/166 (33%), Gaps = 19/166 (11%)
Query: 203 ADPVALHTLDDGTHLGLILQVLHELKLFQALGDITNLHGITDGPDKNGHSHSPRNSLFAI 262
A+ + L LDD H LH ++L G + HG G + G A
Sbjct: 214 AESLLLEALDDLAHQA----ALHAVRLDGDEGALQVGHGPA-GRELEGPGGG------AA 262
Query: 263 VASDRFGDELLPGQ-------GRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKR 315
+ R G PG GR GG A RPD G Q R
Sbjct: 263 LGEQRAGATTTPGSRRRRRGAGRSAGWPHPGGPSRPTRRNAPPARPDAAGEQCPRPAGAR 322
Query: 316 PEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDS 361
P + P TG STW S +E + + SP T + P S
Sbjct: 323 PRQAEIETDPETGSDSFSTWTS-YEFNYARPKSHSSPLSTSRDPKS 367
>gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo
sapiens]
Length = 404
Score = 33.9 bits (76), Expect = 0.26
Identities = 44/166 (26%), Positives = 56/166 (33%), Gaps = 19/166 (11%)
Query: 203 ADPVALHTLDDGTHLGLILQVLHELKLFQALGDITNLHGITDGPDKNGHSHSPRNSLFAI 262
A+ + L LDD H LH ++L G + HG G + G A
Sbjct: 214 AESLLLEALDDLAHQA----ALHAVRLDGDEGALQVGHGPA-GRELEGPGGG------AA 262
Query: 263 VASDRFGDELLPGQ-------GRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKR 315
+ R G PG GR GG A RPD G Q R
Sbjct: 263 LGEQRAGATTTPGSRRRRRGAGRSAGWPHPGGPSRPTRRNAPPARPDAAGEQCPRPAGAR 322
Query: 316 PEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDS 361
P + P TG STW S +E + + SP T + P S
Sbjct: 323 PRQAEIETDPETGSDSFSTWTS-YEFNYARPKSHSSPLSTSRDPKS 367
>gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo
sapiens]
Length = 404
Score = 33.9 bits (76), Expect = 0.26
Identities = 44/166 (26%), Positives = 56/166 (33%), Gaps = 19/166 (11%)
Query: 203 ADPVALHTLDDGTHLGLILQVLHELKLFQALGDITNLHGITDGPDKNGHSHSPRNSLFAI 262
A+ + L LDD H LH ++L G + HG G + G A
Sbjct: 214 AESLLLEALDDLAHQA----ALHAVRLDGDEGALQVGHGPA-GRELEGPGGG------AA 262
Query: 263 VASDRFGDELLPGQ-------GRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKR 315
+ R G PG GR GG A RPD G Q R
Sbjct: 263 LGEQRAGATTTPGSRRRRRGAGRSAGWPHPGGPSRPTRRNAPPARPDAAGEQCPRPAGAR 322
Query: 316 PEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDS 361
P + P TG STW S +E + + SP T + P S
Sbjct: 323 PRQAEIETDPETGSDSFSTWTS-YEFNYARPKSHSSPLSTSRDPKS 367
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 33.1 bits (74), Expect = 0.45
Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 280 GLAVRTGGEKP--RHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVS 337
G + GG+ + D A RP G T HA P+P PP G +
Sbjct: 615 GRVEKPGGQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGGGGSKGNKNGDNNSN 674
Query: 338 H---------HEARGPKNTNQLSPRVTP 356
H H A GP T++ P +P
Sbjct: 675 HNGEGNGQSGHSAAGPGFTSRTEPSKSP 702
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 33.1 bits (74), Expect = 0.45
Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 280 GLAVRTGGEKP--RHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVS 337
G + GG+ + D A RP G T HA P+P PP G +
Sbjct: 615 GRVEKPGGQDKGSQEDDPAATQRPPSNGGAKETSHASLPQPEPPGGGGSKGNKNGDNNSN 674
Query: 338 H---------HEARGPKNTNQLSPRVTP 356
H H A GP T++ P +P
Sbjct: 675 HNGEGNGQSGHSAAGPGFTSRTEPSKSP 702
>gi|194353992 amyloid beta A4 precursor protein-binding, family A,
member 2 isoform b [Homo sapiens]
Length = 737
Score = 32.3 bits (72), Expect = 0.76
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 316 PEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSG 362
PEP P D+ P + S S HEAR PK+ N L P P G
Sbjct: 254 PEPGPEDSVEACPPIKASCSPSRHEAR-PKSLNLLPEAKHPGDPQRG 299
>gi|22035550 amyloid beta A4 precursor protein-binding, family A,
member 2 isoform a [Homo sapiens]
Length = 749
Score = 32.3 bits (72), Expect = 0.76
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 316 PEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSG 362
PEP P D+ P + S S HEAR PK+ N L P P G
Sbjct: 254 PEPGPEDSVEACPPIKASCSPSRHEAR-PKSLNLLPEAKHPGDPQRG 299
>gi|40316944 adenylosuccinate synthase like 1 isoform 1 [Homo
sapiens]
Length = 500
Score = 32.3 bits (72), Expect = 0.76
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 263 VASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPD 322
VA+ R G GQ LA+ T P H L P R Q ++GH+ +PTP
Sbjct: 8 VATQRQGG----GQRPTNLAL-TLSSSPAHSTALPWLPP--RSLQLLSGHSVPAQPTPHL 60
Query: 323 AQPLTGPTRTS-----TWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSRH 373
GPTR + W SH G L R G + ER G ++ H
Sbjct: 61 PSACGGPTRVTLGEERAWRSHGSNAGGHTC--LPRRTAGAGSLTPGGERGGNNAGH 114
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 32.0 bits (71), Expect = 0.99
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 269 GDELLPG-QGRLGLAVRTG--------GEKPRHGDGAEVLRPDLRGSQGVTGHA-KRPEP 318
G LPG QG GL TG G+ G P ++G +G TG A ++ EP
Sbjct: 1060 GSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEP 1119
Query: 319 TPPDAQPLTGP 329
PP ++ L GP
Sbjct: 1120 GPPGSEGLPGP 1130
>gi|118572599 formin homology 2 domain containing 1 [Homo sapiens]
Length = 1164
Score = 32.0 bits (71), Expect = 0.99
Identities = 46/200 (23%), Positives = 70/200 (35%), Gaps = 29/200 (14%)
Query: 170 NVVLQVAHEHEVAGLVPARVQSMVVDVAEDGTCADPVALHTLDDGTHLGLILQVLHELKL 229
N L + + VA A + +V + E+ ADP L + V K
Sbjct: 236 NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL-----------VYTVTLINKT 284
Query: 230 FQALGDITNLHGITDGPDKNGHSHSPRNSLFAIVASDRFGDELLPGQGRLGL-------A 282
AL D + + +TD ++ G + L +L+ + L L A
Sbjct: 285 LAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQLVLYENALKLEDGDIEEA 344
Query: 283 VRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVSHHEAR 342
GG + R +E + R +G A+ PEP P GPT ++
Sbjct: 345 PGAGGRRERRKPSSEEGKRSRRSLEGGGCPARAPEPGPTGPASPVGPTSST--------- 395
Query: 343 GPKNTNQLSPRVTPQGPDSG 362
GP P +P GP SG
Sbjct: 396 GPALLT--GPASSPVGPPSG 413
>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
isoform a precursor [Homo sapiens]
Length = 382
Score = 31.6 bits (70), Expect = 1.3
Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 4/102 (3%)
Query: 273 LPG---QGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGV-TGHAKRPEPTPPDAQPLTG 328
LPG R + V P D PD + T + P+ T P+ T
Sbjct: 210 LPGLELSHRQAIPVLHSPTSPEPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEPPDKTS 269
Query: 329 PTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGS 370
P S H R P +T P ++ GP G G S
Sbjct: 270 PEPAPQQGSTHTPRSPGSTRTRRPEISQAGPTQGEVIPTGSS 311
>gi|239753797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 864
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 325 PLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSRHFREAPTNYTGR 384
P GPT + ++ E GP L P+ P P + ER G H P TG
Sbjct: 399 PTEGPTNQTPYIKGTEGNGP----GLGPQEEPPAPLTSQPERAGAGGSH---GPDQLTGN 451
Query: 385 L 385
L
Sbjct: 452 L 452
>gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo
sapiens]
Length = 894
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Query: 325 PLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSRHFREAPTNYTGR 384
P GPT + ++ E GP L P+ P P + ER G H P TG
Sbjct: 399 PTEGPTNQTPYIKGTEGNGP----GLGPQEEPPAPLTSQPERAGAGGSH---GPDQLTGN 451
Query: 385 L 385
L
Sbjct: 452 L 452
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 31.6 bits (70), Expect = 1.3
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 284 RTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVSHHEARG 343
R + R G EV + +G PEP P + L +R+ S + RG
Sbjct: 1590 RLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSG---SSSKGRG 1646
Query: 344 PKNTNQLSPRVTPQGPDSGNAEREGGSS 371
P S +P+ P R G S
Sbjct: 1647 PSPEGSSSTESSPEHPPKSRTARRGSRS 1674
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 31.2 bits (69), Expect = 1.7
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 316 PEPTPPDAQPLTGPT----------RTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAE 365
P P PP A P++ T R++ + + Q++ R PQ S
Sbjct: 21 PPPPPPSAPPVSTDTSSLRRADPKGRSALLADIQQGTRLRKVTQINDRSAPQIESSKGTN 80
Query: 366 REGGSSRHFREAPT 379
+EGG S + R A T
Sbjct: 81 KEGGGSANTRGAST 94
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 30.8 bits (68), Expect = 2.2
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 293 GDGAEVLRPDLRGSQGVTGHAKRPEPT--PPDAQPLTGPTRTSTWVSHHEARGPKNTNQL 350
GD A V LR A RP P PP GP + S+ H R + T +L
Sbjct: 41 GDAARVDAAALRA-------AARPGPLGRPPTR---AGPAQRSSCTQPHRRRR-RGTRRL 89
Query: 351 SPRVTPQGPDSGNAEREGGSSR 372
P +TP GP ++ R GG +R
Sbjct: 90 PPALTPAGP--YHSARPGGGAR 109
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 30.8 bits (68), Expect = 2.2
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 293 GDGAEVLRPDLRGSQGVTGHAKRPEPT--PPDAQPLTGPTRTSTWVSHHEARGPKNTNQL 350
GD A V LR A RP P PP GP + S+ H R + T +L
Sbjct: 41 GDAARVDAAALRA-------AARPGPLGRPPTR---AGPAQRSSCTQPHRRRR-RGTRRL 89
Query: 351 SPRVTPQGPDSGNAEREGGSSR 372
P +TP GP ++ R GG +R
Sbjct: 90 PPALTPAGP--YHSARPGGGAR 109
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 30.8 bits (68), Expect = 2.2
Identities = 36/108 (33%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 269 GDELLPGQ-GRLGLAVRTG-----GEKPRHGDGAEVLRPDLRGSQGVTGHAKRP-EPTPP 321
GD LPG+ G GL G GEK GD E R GS G G P P PP
Sbjct: 1646 GDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPP 1705
Query: 322 DAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGG 369
TGP E P + Q PR P A E G
Sbjct: 1706 GRLVDTGP-------GAREKGEPGDRGQEGPRGPKGDPGLPGAPGERG 1746
Score = 30.0 bits (66), Expect = 3.8
Identities = 33/113 (29%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 276 QGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTW 335
+G G+ G PR DG P L G +G+ G +P P P GP
Sbjct: 2131 RGVPGIKGDRGEPGPRGQDG----NPGLPGERGMAGPEGKPGLQGPRGPP--GP------ 2178
Query: 336 VSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSRHFREAPTNYTGRLQLP 388
V H GP L+ PQGP + E G + T TG + LP
Sbjct: 2179 VGGHGDPGPPGAPGLAGPAGPQGP--SGLKGEPGETGPPGRGLTGPTGAVGLP 2229
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 30.4 bits (67), Expect = 2.9
Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 12/135 (8%)
Query: 240 HGITDGPDKNGHSHSPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVL 299
HG + G + H +S + G PG G+ G R RHG G+
Sbjct: 2032 HGASSGQSSSHGQHGSGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRS 2091
Query: 300 R------PDLRGSQGVTGHAKRPEPTPPDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPR 353
P L S G H + +Q +G +S + H G S R
Sbjct: 2092 SSSGQHGPGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQ------SSR 2145
Query: 354 VTPQGPDSGNAEREG 368
G SG++ R G
Sbjct: 2146 GERHGSSSGSSSRYG 2160
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 30.4 bits (67), Expect = 2.9
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 268 FGDELLPGQGRLGLAVRTGGEK----PRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDA 323
F D LL G+ R R +K P D + LRP GS+ G A +
Sbjct: 320 FNDPLLCGKIRPRKKARQKSQKSPWQPFPDDHSACLRP---GSETDAGRAVSQAQESVQS 376
Query: 324 QPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPD 360
+ + GP + S H + GP + +QLS TP+ PD
Sbjct: 377 K-VKGPGKMS-----HSSSGPASVSQLSSWKTPEQPD 407
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 30.4 bits (67), Expect = 2.9
Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 2/113 (1%)
Query: 261 AIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHAKRPEPTP 320
A D+FG L + + R+G G + L L G G + +P P
Sbjct: 36 AFPGGDKFGTTFLSAAAK-AQGFGDAKSRARYGAGQQDLATPLESGAGARGSFNKFQPQP 94
Query: 321 PDAQPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPDSGNAEREGGSSRH 373
QP P + + + P + R + P G+ + + GSS H
Sbjct: 95 STPQP-QPPPQPQPQQQQPQPQPPAQPHLYLQRGACKTPPDGSLKLQEGSSGH 146
>gi|24308326 BR serine/threonine kinase 1 [Homo sapiens]
Length = 778
Score = 30.4 bits (67), Expect = 2.9
Identities = 35/149 (23%), Positives = 51/149 (34%), Gaps = 31/149 (20%)
Query: 254 SPRNSLFAIVASDRFGDELLPGQGRLGLAVRTGGEKPRHGDGAEVLRPDLRGSQGVTGHA 313
SPR+ +F+ GDE G G+ + S+G G
Sbjct: 447 SPRSPVFSFSPEPGAGDEA-------------------RGGGSPTSKTQTLPSRGPRGGG 487
Query: 314 KRPEPTPPDAQ--PLTGPTRTSTWVSHHEARGPKNTNQLSPRVTP-------QGPDSGNA 364
+P PP A+ PL GP + P +T + SP TP G G A
Sbjct: 488 AGEQPPPPSARSTPLPGPPGSPRSSGGTPLHSPLHTPRASPTGTPGTTPPPSPGGGVGGA 547
Query: 365 ---EREGGSSRHFREAPTNYTGRLQLPVA 390
R F +P + ++Q+P A
Sbjct: 548 AWRSRLNSIRNSFLGSPRFHRRKMQVPTA 576
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 30.4 bits (67), Expect = 2.9
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 268 FGDELLPGQGRLGLAVRTGGEK----PRHGDGAEVLRPDLRGSQGVTGHAKRPEPTPPDA 323
F D LL G+ R R +K P D + LRP GS+ G A +
Sbjct: 358 FNDPLLCGKIRPRKKARQKSQKSPWQPFPDDHSACLRP---GSETDAGRAVSQAQESVQS 414
Query: 324 QPLTGPTRTSTWVSHHEARGPKNTNQLSPRVTPQGPD 360
+ + GP + S H + GP + +QLS TP+ PD
Sbjct: 415 K-VKGPGKMS-----HSSSGPASVSQLSSWKTPEQPD 445
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,908,148
Number of Sequences: 37866
Number of extensions: 855249
Number of successful extensions: 2988
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 2922
Number of HSP's gapped (non-prelim): 126
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.