Guide to the Human Genome
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Name: ALX4 Sequence: fasta or formatted (411aa) NCBI GI: 55743092
Description:

aristaless-like homeobox 4

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         46           3
 C cysteine            1.7          7           1
 D aspartate           3.9         16           1
 E glutamate           5.4         22           2
 F phenylalanine       3.4         14           1
 G glycine             8.0         33           2
 H histidine           2.2          9           1
 I isoleucine          0.7          3           1
 K lysine              4.9         20           2
 L leucine             6.6         27           2
 M methionine          1.9          8           1
 N asparagine          2.7         11           2
 P proline            10.0         41           3
 Q glutamine           7.8         32           4
 R arginine            5.4         22           2
 S serine             10.9         45           2
 T threonine           4.9         20           2
 V valine              4.4         18           2
 W tryptophan          1.0          4           1
 Y tyrosine            3.2         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aristaless-like homeobox 4 
ALX1                  0.253   cartilage paired-class homeoprotein 1 
ALX3                  0.221   aristaless-like homeobox 3 
ARX                   0.139   aristaless related homeobox 
RAX                   0.122   retina and anterior neural fold homeobox 
DRGX                  0.119   dorsal root ganglia homeobox 
PITX1                 0.110   paired-like homeodomain transcription factor 1 [Hom...
VSX2                  0.110   visual system homeobox 2 
PITX2                 0.106   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.106   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.106   paired-like homeodomain transcription factor 2 isofo...
PITX3                 0.103   paired-like homeodomain 3 
RAX2                  0.101   retina and anterior neural fold homeobox 2 
PHOX2B                0.100   paired-like homeobox 2b 
VSX1                  0.100   visual system homeobox 1 isoform a 
ISX                   0.098   intestine-specific homeobox 
PAX7                  0.097   paired box 7 isoform 1 
PAX7                  0.097   paired box 7 isoform 2 
PAX7                  0.097   paired box 7 isoform 3 
OTP                   0.095   PREDICTED: orthopedia homeobox 
OTP                   0.095   orthopedia homeobox 
PAX3                  0.095   paired box 3 isoform PAX3i 
PAX3                  0.095   paired box 3 isoform PAX3g 
PAX3                  0.095   paired box 3 isoform PAX3h 
PAX3                  0.095   paired box 3 isoform PAX3e 
PAX3                  0.095   paired box 3 isoform PAX3d 
PAX3                  0.095   paired box 3 isoform PAX3 
PHOX2A                0.095   paired-like homeobox 2a 
UNCX                  0.095   UNC homeobox 
PRRX2                 0.094   paired related homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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