Guide to the Human Genome
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Name: LOC100288546 Sequence: fasta or formatted (441aa) NCBI GI: 239745478
Description:

PREDICTED: hypothetical protein XP_002343503

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         40           2
 C cysteine            1.4          6           2
 D aspartate           5.9         26           2
 E glutamate           5.0         22           1
 F phenylalanine       2.0          9           1
 G glycine            10.2         45           2
 H histidine           4.8         21           2
 I isoleucine          1.4          6           1
 K lysine              1.8          8           1
 L leucine            12.9         57           5
 M methionine          1.1          5           1
 N asparagine          3.2         14           1
 P proline             5.9         26           2
 Q glutamine           7.7         34           3
 R arginine            6.3         28           1
 S serine              5.9         26           2
 T threonine           5.0         22           2
 V valine              8.2         36           3
 W tryptophan          1.6          7           1
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343503 
LOC100289691          1.000   PREDICTED: hypothetical protein XP_002347688 
LOC100291827          0.904   PREDICTED: hypothetical protein XP_002344924 
LOC100288341          0.802   PREDICTED: hypothetical protein XP_002343499 
RBMXL2                0.016   testes-specific heterogenous nuclear ribonucleoprot...
ZNF469                0.013   zinc finger protein 469 
MAN1C1                0.011   mannosidase, alpha, class 1C, member 1 
TCF20                 0.009   transcription factor 20 isoform 2 
TCF20                 0.009   transcription factor 20 isoform 1 
LOC100293107          0.009   PREDICTED: hypothetical protein 
LOC100290679          0.009   PREDICTED: hypothetical protein XP_002347834 
LOC100288571          0.009   PREDICTED: hypothetical protein XP_002343612 
APBA2                 0.008   amyloid beta A4 precursor protein-binding, family A...
APBA2                 0.008   amyloid beta A4 precursor protein-binding, family A,...
ADSSL1                0.008   adenylosuccinate synthase like 1 isoform 1 
COL16A1               0.008   alpha 1 type XVI collagen precursor 
MADCAM1               0.008   mucosal vascular addressin cell adhesion molecule 1...
LOC100293404          0.008   PREDICTED: hypothetical protein 
LOC100291131          0.008   PREDICTED: hypothetical protein XP_002346641 
SRRM2                 0.008   splicing coactivator subunit SRm300 
LMAN1                 0.007   lectin, mannose-binding, 1 precursor 
WIPF3                 0.007   WAS/WASL interacting protein family, member 3 [Homo...
HRNR                  0.007   hornerin 
LOC100289408          0.007   PREDICTED: hypothetical protein 
LOC100289408          0.007   PREDICTED: hypothetical protein XP_002344217 
COL7A1                0.007   alpha 1 type VII collagen precursor 
LOC100294444          0.006   PREDICTED: similar to family with sequence similari...
ALX4                  0.006   aristaless-like homeobox 4 
BRSK1                 0.006   BR serine/threonine kinase 1 
FAM48B2               0.006   family with sequence similarity 48, member B2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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