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Search of human proteins with 239745123
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745123 PREDICTED: hypothetical protein XP_002343373 [Homo
sapiens]
(205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745123 PREDICTED: hypothetical protein XP_002343373 [Homo ... 432 e-121
gi|239745158 PREDICTED: hypothetical protein XP_002343376 [Homo ... 306 6e-84
gi|122937271 WAS protein homolog associated with actin, golgi me... 302 1e-82
gi|195947369 junction-mediating and regulatory protein [Homo sap... 56 2e-08
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 37 0.012
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 37 0.012
gi|239756354 PREDICTED: hypothetical protein [Homo sapiens] 35 0.045
gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo ... 35 0.045
gi|239750880 PREDICTED: hypothetical protein XP_002347591 [Homo ... 35 0.058
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 34 0.099
gi|169214023 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|169214468 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|7706469 Kruppel-like factor [Homo sapiens] 33 0.17
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 32 0.29
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 32 0.29
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 32 0.29
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 32 0.29
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 32 0.29
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 32 0.38
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens] 32 0.38
gi|113421471 PREDICTED: hypothetical protein [Homo sapiens] 32 0.49
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 31 0.64
gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens] 31 0.64
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 31 0.84
gi|169190076 PREDICTED: hypothetical protein [Homo sapiens] 31 0.84
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 31 0.84
gi|47078224 AT rich interactive domain 5A [Homo sapiens] 31 0.84
gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing... 31 0.84
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 30 1.1
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 30 1.1
>gi|239745123 PREDICTED: hypothetical protein XP_002343373 [Homo
sapiens]
Length = 205
Score = 432 bits (1111), Expect = e-121
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGAR 60
MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGAR
Sbjct: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGAR 60
Query: 61 LGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWPPLER 120
LGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWPPLER
Sbjct: 61 LGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWPPLER 120
Query: 121 CSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRH 180
CSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRH
Sbjct: 121 CSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRH 180
Query: 181 AVFAAKGRAADCESPREFRERALRA 205
AVFAAKGRAADCESPREFRERALRA
Sbjct: 181 AVFAAKGRAADCESPREFRERALRA 205
>gi|239745158 PREDICTED: hypothetical protein XP_002343376 [Homo
sapiens]
Length = 156
Score = 306 bits (785), Expect = 6e-84
Identities = 156/205 (76%), Positives = 156/205 (76%), Gaps = 49/205 (23%)
Query: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGAR 60
MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAE
Sbjct: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAE---------------------- 38
Query: 61 LGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWPPLER 120
AAVFPPNWAGRFSAAGFRGARWQLAALWPPLER
Sbjct: 39 ---------------------------AAVFPPNWAGRFSAAGFRGARWQLAALWPPLER 71
Query: 121 CSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRH 180
CSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRH
Sbjct: 72 CSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGATVRH 131
Query: 181 AVFAAKGRAADCESPREFRERALRA 205
AVFAAKGRAADCESPREFRERALRA
Sbjct: 132 AVFAAKGRAADCESPREFRERALRA 156
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 302 bits (773), Expect = 1e-82
Identities = 154/209 (73%), Positives = 162/209 (77%), Gaps = 21/209 (10%)
Query: 1 MEDEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGAR 60
MEDEQ DSLEGW PVR+GLFA+ ERHRLRFLVAWNGAEGK AVTCHD TAQQ + REGAR
Sbjct: 1 MEDEQPDSLEGWVPVREGLFAEPERHRLRFLVAWNGAEGKFAVTCHDRTAQQRRLREGAR 60
Query: 61 LGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWPPLER 120
LG EP+PK AAV P +WAG SAAG RGA QLAALWPPLER
Sbjct: 61 LGPEPEPKPE-----------------AAVSPSSWAGLLSAAGLRGAHRQLAALWPPLER 103
Query: 121 C----SPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCGGA 176
C P+LDVGGGGAW LGLGLWALLW RAGPGE ALQELCGQLERYLGAAA GCGGA
Sbjct: 104 CFPRLPPELDVGGGGAWGLGLGLWALLWPTRAGPGEAALQELCGQLERYLGAAADGCGGA 163
Query: 177 TVRHAVFAAKGRAADCESPREFRERALRA 205
TVR A+F A+G AADCESPREFRERALRA
Sbjct: 164 TVRDALFPAEGGAADCESPREFRERALRA 192
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 55.8 bits (133), Expect = 2e-08
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 3 DEQLDSLEGWAPVRQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQ----PQRREG 58
+E L+S W VR +F + E+H+ F+VAWN EGK A+TCH+ TAQ+ + + G
Sbjct: 6 EETLES--DWVAVRPHVFDEREKHKFVFIVAWNEIEGKFAITCHNRTAQRQRSGSREQAG 63
Query: 59 ARLGLE 64
AR G E
Sbjct: 64 ARGGAE 69
Score = 42.4 bits (98), Expect = 3e-04
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 19/110 (17%)
Query: 94 NWAGRFSAAGFRGARWQLAALWPPLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEV 153
+WAG FS R QL ++ LE C P G W++ G G E+
Sbjct: 228 SWAGLFSFQDLRAVHQQLCSVNSQLEPCLPVFPEEPSGMWTVLFG----------GAPEM 277
Query: 154 ALQE---LCGQLERYLGAAAHGCGGATVRHAVFAAKGRAADCESPREFRE 200
QE LC QL+ YLG CG + +F + + P E+ E
Sbjct: 278 TEQEIDTLCYQLQVYLGHGLDTCGWKILSQVLF------TETDDPEEYYE 321
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 37.0 bits (84), Expect = 0.012
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 36 GAEGKLAVTCHDLTAQQPQRREGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPP 93
G +GK C DL QP G+ L L + C +P++ P P P + PP
Sbjct: 1530 GVKGKSKSACSDLLGNQPSSFSGSNLTLNDDWNKGTNVSFCVLPSRRPPPPPVPLLPP 1587
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 37.0 bits (84), Expect = 0.012
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 36 GAEGKLAVTCHDLTAQQPQRREGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPP 93
G +GK C DL QP G+ L L + C +P++ P P P + PP
Sbjct: 1444 GVKGKSKSACSDLLGNQPSSFSGSNLTLNDDWNKGTNVSFCVLPSRRPPPPPVPLLPP 1501
>gi|239756354 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 35.0 bits (79), Expect = 0.045
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 16 RQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGARLGLEPKPKAAVSPP- 74
R GL + ER R L+A N C L A R P P ++PP
Sbjct: 30 RAGLRSPRERQWRRRLLARN------CTACAALPAAPAPSRS-------PDPSKCLAPPR 76
Query: 75 SCRVPAQLPCPRPAAVFPPNWAGRFSAAGFR 105
S R P + P P P PP+ AG FS + R
Sbjct: 77 SRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
>gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo
sapiens]
Length = 110
Score = 35.0 bits (79), Expect = 0.045
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 16 RQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGARLGLEPKPKAAVSPP- 74
R GL + ER R L+A N C L A R P P ++PP
Sbjct: 30 RAGLRSPRERQWRRRLLARN------CTACAALPAAPAPSRS-------PDPSKCLAPPR 76
Query: 75 SCRVPAQLPCPRPAAVFPPNWAGRFSAAGFR 105
S R P + P P P PP+ AG FS + R
Sbjct: 77 SRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
>gi|239750880 PREDICTED: hypothetical protein XP_002347591 [Homo
sapiens]
Length = 110
Score = 34.7 bits (78), Expect = 0.058
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 16 RQGLFADAERHRLRFLVAWNGAEGKLAVTCHDLTAQQPQRREGARLGLEPKPKAAVSPP- 74
R GL + ER R L+A N C L A R P P ++PP
Sbjct: 30 RAGLRSPRERQWRRRLLARN------CTACAALPAAPAPSRS-------PDPSKRLAPPR 76
Query: 75 SCRVPAQLPCPRPAAVFPPNWAGRFSAAGFR 105
S R P + P P P PP+ AG FS + R
Sbjct: 77 SRRSPLRAPAPLPGNRVPPHAAGSFSQSPLR 107
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 33.9 bits (76), Expect = 0.099
Identities = 34/102 (33%), Positives = 38/102 (37%), Gaps = 21/102 (20%)
Query: 52 QPQRREGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAG--RFSAAGFRGARW 109
QP+ R ++ GL P PP P P PRP A W G R S G R
Sbjct: 109 QPRARSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPRA-----WRGSRRRSRPGSR---- 159
Query: 110 QLAALWPPLER-CSPQLDVGGGGAWSLGLGLWALLWQARAGP 150
P R CS LD G GLG W L + GP
Sbjct: 160 ------PQTRRSCSGDLDGSGDPG---GLGDWLLEVEFGQGP 192
>gi|169214023 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 33.5 bits (75), Expect = 0.13
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 36 GAEGKLAVTCHDLTAQQPQRREGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPN- 94
G EG + H+L +P R G L P+PKA S + P PRP + + P
Sbjct: 33 GEEGSFS---HELF--RPAHRPGPALRPRPQPKAPPSSAAPPTPHSSIPPRPPSPWGPRV 87
Query: 95 WAGRFSAAGFRGARWQLAA--------LWPPL---ERCSPQLDVGGGGAWSL 135
W +G QL A WP L E S + + GGG S+
Sbjct: 88 WGAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTESASAEREREGGGPRSI 139
>gi|169214468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 33.5 bits (75), Expect = 0.13
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 17/112 (15%)
Query: 36 GAEGKLAVTCHDLTAQQPQRREGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPN- 94
G EG + H+L +P R G L P+PKA S + P PRP + + P
Sbjct: 33 GEEGSFS---HELF--RPAHRPGPALRPRPQPKAPPSSAAPPTPHSSIPPRPPSPWGPRV 87
Query: 95 WAGRFSAAGFRGARWQLAA--------LWPPL---ERCSPQLDVGGGGAWSL 135
W +G QL A WP L E S + + GGG S+
Sbjct: 88 WGAPTHRPALKGTEAQLLAPGPAAGSGCWPELAGTESASAEREREGGGPRSI 139
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 33.1 bits (74), Expect = 0.17
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 62 GLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWPPLERC 121
G P P P S PA+LP P P A FPP + G A G + PP
Sbjct: 164 GGRPPPPPDTPPLSPDGPARLPAPGPRASFPPPFGGPGFGAPGPGLHYA-----PPAPPA 218
Query: 122 SPQLDVGGGGAWSLGL 137
D A +LGL
Sbjct: 219 FGLFDDAAAAAAALGL 234
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 32.3 bits (72), Expect = 0.29
Identities = 45/152 (29%), Positives = 54/152 (35%), Gaps = 22/152 (14%)
Query: 58 GARLGLEPKPKAAVSP---PSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGA---RWQL 111
G LGLE +P A+ P PS P LP P P P + G A RW L
Sbjct: 337 GLELGLELEPVPALGPVPGPSV-TPGSLPAPWPVLGPVPAPGAQPPPLGDWPALPRRWPL 395
Query: 112 AALWPPLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQ-LERYLGAAA 170
WP VG W LG+ +RA P L + L+ Y
Sbjct: 396 PQGWP---------RVGSWPLWDLGVLRPTQPQPSRAPPPATEFGSLWPRPLQPYQSRQ- 445
Query: 171 HGCGGATVRHAVFAAKGRAADCESPREFRERA 202
G ++ A KG D S R RERA
Sbjct: 446 ----GEALQLAAVQVKGEENDVPSLRGLRERA 473
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 32.3 bits (72), Expect = 0.29
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 47 DLTAQQPQRREGARLGLEPKPKAAVSPPSCRVPAQL-------------PCPRPAAVFPP 93
+L + +P GA EP+P+A++ PP P+ L P R AA+ PP
Sbjct: 31 ELLSSRPASPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90
Query: 94 NWAGRFSAAG---------FRGARWQLAALWPPLERCSPQLDVGGGGAWSLG 136
F+ A G R + + P ER SP S G
Sbjct: 91 GTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRG 142
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 32.3 bits (72), Expect = 0.29
Identities = 45/178 (25%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 16 RQGLFADAERHRLRFLVAWNGAEGKLAVTC-------------------HDLTAQQPQRR 56
R G E R V W G G+LA C HD P
Sbjct: 709 RLGYLRGPETRRRGGGVWWKGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAPPGP 768
Query: 57 EGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWP 116
AR GL P+P PP P + PC R W G G Q +A P
Sbjct: 769 TPARRGL-PRPPPPPPPPLPPPPRREPCHRA-------WPGPAQPLGNLRPPVQQSA--P 818
Query: 117 PLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCG 174
+C + + G + G + +A G GE +Q G R L CG
Sbjct: 819 GGRKCVKEGEATGPSKETRGPKECRQVGEAVLGEGEAPMQSSPGPPNRCLQRLEMRCG 876
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 32.3 bits (72), Expect = 0.29
Identities = 45/178 (25%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 16 RQGLFADAERHRLRFLVAWNGAEGKLAVTC-------------------HDLTAQQPQRR 56
R G E R V W G G+LA C HD P
Sbjct: 709 RLGYLRGPETRRRGGGVWWKGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAPPGP 768
Query: 57 EGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWP 116
AR GL P+P PP P + PC R W G G Q +A P
Sbjct: 769 TPARRGL-PRPPPPPPPPLPPPPRREPCHRA-------WPGPAQPLGNLRPPVQQSA--P 818
Query: 117 PLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCG 174
+C + + G + G + +A G GE +Q G R L CG
Sbjct: 819 GGRKCVKEGEATGPSKETRGPKECRQVGEAVLGEGEAPMQSSPGPPNRCLQRLEMRCG 876
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 32.3 bits (72), Expect = 0.29
Identities = 45/178 (25%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 16 RQGLFADAERHRLRFLVAWNGAEGKLAVTC-------------------HDLTAQQPQRR 56
R G E R V W G G+LA C HD P
Sbjct: 709 RLGYLRGPETRRRGGGVWWKGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAPPGP 768
Query: 57 EGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWP 116
AR GL P+P PP P + PC R W G G Q +A P
Sbjct: 769 TPARRGL-PRPPPPPPPPLPPPPRREPCHRA-------WPGPAQPLGNLRPPVQQSA--P 818
Query: 117 PLERCSPQLDVGGGGAWSLGLGLWALLWQARAGPGEVALQELCGQLERYLGAAAHGCG 174
+C + + G + G + +A G GE +Q G R L CG
Sbjct: 819 GGRKCVKEGEATGPSKETRGPKECRQVGEAVLGEGEAPMQSSPGPPNRCLQRLEMRCG 876
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 32.0 bits (71), Expect = 0.38
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 47 DLTAQQPQRREGARLGLEPKPKAAVSPPSCRVPAQL-------------PCPRPAAVFPP 93
+L + +P GA EP+P+A++ PP P+ L P R AA+ PP
Sbjct: 31 ELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90
Query: 94 NWAGRFSAAG---------FRGARWQLAALWPPLERCSPQLDVGGGGAWSLG 136
F+ A G R + + P ER SP S G
Sbjct: 91 GTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRG 142
>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 32.0 bits (71), Expect = 0.38
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 47 DLTAQQPQRREGARLGLEPKPKAAVSPPSCRVPAQL-------------PCPRPAAVFPP 93
+L + +P GA EP+P+A++ PP P+ L P R AA+ PP
Sbjct: 31 ELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWPKRLPGRPGRAPGDRRAALPPP 90
Query: 94 NWAGRFSAAG---------FRGARWQLAALWPPLERCSPQLDVGGGGAWSLG 136
F+ A G R + + P ER SP S G
Sbjct: 91 GTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASARTSRG 142
>gi|113421471 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 31.6 bits (70), Expect = 0.49
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 68 KAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGAR--WQLAALWPPLERCSPQL 125
+ V P + P PCPR G +A GAR W+ A PP R PQ
Sbjct: 119 RGRVPPRDQQTPKSRPCPRAPVASNRQSGGSAVSAPLSGARRAWKSAFAAPPRSRLRPQK 178
Query: 126 DV--------GGGGA 132
V GGG A
Sbjct: 179 GVPWTEKRARGGGRA 193
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 31.2 bits (69), Expect = 0.64
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 166 LGAAAHGCGGATVRHAVFAAKGRAADCESPR 196
LG A G GGA +RH+ +G A C PR
Sbjct: 178 LGEGAAGGGGAHLRHSCSTGRGSATRCPGPR 208
>gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens]
Length = 526
Score = 31.2 bits (69), Expect = 0.64
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 63 LEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAG 97
L+PK AA SPP C P+Q P +P P G
Sbjct: 221 LQPKSLAASSPPPCSQPSQCPEEKPQESSPMKGPG 255
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 30.8 bits (68), Expect = 0.84
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 53 PQRREGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLA 112
PQ + G+ PKPK + P Q P PR P AGR + A R A
Sbjct: 804 PQMQASPSPGIAPKPKTPPTAPEPAAAVQAPLPRE----PLALAGRTAPAQPR------A 853
Query: 113 ALWPPLERCSPQ 124
A PP +R SPQ
Sbjct: 854 ASAPPTDR-SPQ 864
>gi|169190076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 161
Score = 30.8 bits (68), Expect = 0.84
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 68 KAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGAR--WQLAALWPPLERCSPQL 125
+ V P + P PCPR G +A GAR W+ A PP R PQ
Sbjct: 81 RGRVPPRDQQTPKSGPCPRAPVASNRQSGGSAVSAPLSGARRAWKSAFAAPPRSRLRPQK 140
Query: 126 DV--------GGGGA 132
V GGG A
Sbjct: 141 GVPWTEKRARGGGRA 155
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 30.8 bits (68), Expect = 0.84
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 47 DLTAQQPQRREGARLGL----EPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAA 102
DL +++ Q RE +R L + KP A +PPS P+ P P A+V P R A
Sbjct: 1022 DLQSEEIQGREKSRPDLGGASKAKPPTAPAPPSAPAPSAQPTPPSASV--PGKKAREEAP 1079
Query: 103 G 103
G
Sbjct: 1080 G 1080
>gi|47078224 AT rich interactive domain 5A [Homo sapiens]
Length = 594
Score = 30.8 bits (68), Expect = 0.84
Identities = 33/98 (33%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 58 GARLG-LEPKPKAAVSPPSCRVPAQLPCPRPAAVFPPNWAGRFS----AAGFRGARWQLA 112
G+R G L PKPKA P +VPA+ P P P + S A G R L
Sbjct: 403 GSRKGILYPKPKACWVSPMAKVPAESPTLPPTFPSSPGLGSKRSLEEEGAAHSGKR--LR 460
Query: 113 ALWPPLERCSPQLDVGGGGAWSLGLGLWALLWQARAGP 150
A+ P L+ + D GA G GL + L GP
Sbjct: 461 AVSPFLK----EADAKKCGAKPAGSGLVSCLLGPALGP 494
>gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing 2
[Homo sapiens]
Length = 151
Score = 30.8 bits (68), Expect = 0.84
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 71 VSPPSCRVPAQLPCPRPAAVFPPNWAGRFSAAGFRGARWQLAALWPPLERCSPQLDVGGG 130
++PP+ R P PRPA V P A SA G A + L + + + VG
Sbjct: 12 MAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSA 71
Query: 131 GAWSLG 136
+LG
Sbjct: 72 VGHTLG 77
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 30.4 bits (67), Expect = 1.1
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 49 TAQQPQRREGARLGLEPKPKAAVSPPSCRVPAQL--PCPRPAAVFPPNW 95
T P + LG P P+A PP P L P P P F P W
Sbjct: 675 TPVPPSPPQPVTLGAVPAPQAPPPPPKALYPGALGRPPPMPPMNFDPRW 723
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 30.4 bits (67), Expect = 1.1
Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 56 REGARLGLEPKPKAAVSPPSCRVPAQLPCPRPAAVFP-PNWAG 97
R G R P P AA +PP C P P P A P P AG
Sbjct: 87 RGGLRSCFPPGPAAAPTPPPCPPPPASPAPPACAAEPVPGVAG 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,831,560
Number of Sequences: 37866
Number of extensions: 538249
Number of successful extensions: 2445
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 2328
Number of HSP's gapped (non-prelim): 179
length of query: 205
length of database: 18,247,518
effective HSP length: 97
effective length of query: 108
effective length of database: 14,574,516
effective search space: 1574047728
effective search space used: 1574047728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.