Guide to the Human Genome
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Name: LOC100288203 Sequence: fasta or formatted (205aa) NCBI GI: 239745123
Description:

PREDICTED: hypothetical protein XP_002343373

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.1         35           3
 C cysteine            3.4          7           1
 D aspartate           2.9          6           1
 E glutamate           6.8         14           1
 F phenylalanine       3.4          7           1
 G glycine            11.2         23           4
 H histidine           2.0          4           1
 I isoleucine          0.0          0           0
 K lysine              2.0          4           1
 L leucine            11.7         24           2
 M methionine          0.5          1           1
 N asparagine          1.0          2           1
 P proline             8.3         17           2
 Q glutamine           5.4         11           2
 R arginine           10.2         21           2
 S serine              3.4          7           1
 T threonine           1.5          3           1
 V valine              4.9         10           1
 W tryptophan          3.9          8           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343373 
LOC100288615          0.690   PREDICTED: hypothetical protein XP_002343376 
WHAMM                 0.681   WAS protein homolog associated with actin, golgi me...
JMY                   0.076   junction-mediating and regulatory protein 
SYNJ1                 0.029   synaptojanin 1 isoform a 
SYNJ1                 0.029   synaptojanin 1 isoform d 
LOC100292324          0.025   PREDICTED: hypothetical protein 
LOC100287849          0.025   PREDICTED: hypothetical protein XP_002343395 
LOC100291333          0.025   PREDICTED: hypothetical protein XP_002347591 
USP51                 0.022   ubiquitin specific protease 51 
LOC100133554          0.020   PREDICTED: hypothetical protein 
LOC100133554          0.020   PREDICTED: hypothetical protein 
KLF2                  0.020   Kruppel-like factor 
LOC342346             0.017   hypothetical protein LOC342346 
LOC100128127          0.017   PREDICTED: hypothetical protein 
LOC100289444          0.017   PREDICTED: hypothetical protein 
LOC100289444          0.017   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.017   PREDICTED: hypothetical protein 
LOC100128127          0.017   PREDICTED: hypothetical protein 
LOC100128127          0.017   PREDICTED: hypothetical protein 
LOC728449             0.017   PREDICTED: hypothetical protein 
LOC100292397          0.015   PREDICTED: hypothetical protein 
TSEN54                0.015   tRNA splicing endonuclease 54 homolog 
LOC389333             0.015   hypothetical protein LOC389333 
LOC100132646          0.015   PREDICTED: hypothetical protein 
KDM6B                 0.015   lysine (K)-specific demethylase 6B 
ARID5A                0.015   AT rich interactive domain 5A 
CHCHD2                0.015   coiled-coil-helix-coiled-coil-helix domain containing...
BAT2                  0.012   HLA-B associated transcript-2 
USP31                 0.012   ubiquitin specific peptidase 31 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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