Guide to the Human Genome
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Name: LOC100288615 Sequence: fasta or formatted (156aa) NCBI GI: 239745158
Description:

PREDICTED: hypothetical protein XP_002343376

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.6         29           3
 C cysteine            2.6          4           1
 D aspartate           3.2          5           1
 E glutamate           7.7         12           1
 F phenylalanine       4.5          7           1
 G glycine            12.8         20           4
 H histidine           1.9          3           1
 I isoleucine          0.0          0           0
 K lysine              0.6          1           1
 L leucine            12.2         19           2
 M methionine          0.6          1           1
 N asparagine          1.3          2           1
 P proline             5.1          8           2
 Q glutamine           4.5          7           1
 R arginine           10.3         16           1
 S serine              3.2          5           1
 T threonine           0.6          1           1
 V valine              4.5          7           1
 W tryptophan          5.1          8           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343376 
LOC100288203          0.921   PREDICTED: hypothetical protein XP_002343373 
WHAMM                 0.741   WAS protein homolog associated with actin, golgi me...
JMY                   0.056   junction-mediating and regulatory protein 
LOC100292397          0.020   PREDICTED: hypothetical protein 
LOC100292143          0.016   PREDICTED: hypothetical protein 
IRX4                  0.013   iroquois homeobox 4 
LOC100289168          0.013   PREDICTED: hypothetical protein XP_002343025 
LOC100128703          0.010   PREDICTED: hypothetical protein 
LOC100293346          0.007   PREDICTED: hypothetical protein 
TPCN2                 0.007   two pore segment channel 2 
LOC100131831          0.007   PREDICTED: hypothetical protein 
LOC100131831          0.007   PREDICTED: hypothetical protein 
LOC100131831          0.007   PREDICTED: hypothetical protein 
KIAA1804              0.007   mixed lineage kinase 4 
ANKRD43               0.007   ankyrin repeat domain 43 
FIZ1                  0.007   FLT3-interacting zinc finger 1 
ZBTB8B                0.007   zinc finger and BTB domain containing 8B 
LOC344595             0.007   PREDICTED: hypothetical protein 
LOC344595             0.007   PREDICTED: hypothetical protein 
LOC344595             0.007   PREDICTED: hypothetical protein 
OPA3                  0.007   OPA3 protein isoform b 
MATK                  0.007   megakaryocyte-associated tyrosine kinase isoform c [...
MATK                  0.007   megakaryocyte-associated tyrosine kinase isoform b [...
MATK                  0.007   megakaryocyte-associated tyrosine kinase isoform a [...
C9orf23               0.007   hypothetical protein LOC138716 
C9orf23               0.007   hypothetical protein LOC138716 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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