Guide to the Human Genome
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Name: LOC100291333 Sequence: fasta or formatted (110aa) NCBI GI: 239750880
Description:

PREDICTED: hypothetical protein XP_002347591

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         16           2
 C cysteine            1.8          2           1
 D aspartate           0.9          1           1
 E glutamate           3.6          4           2
 F phenylalanine       0.9          1           1
 G glycine             3.6          4           1
 H histidine           1.8          2           1
 I isoleucine          0.0          0           0
 K lysine              1.8          2           1
 L leucine            10.0         11           2
 M methionine          2.7          3           1
 N asparagine          1.8          2           1
 P proline            17.3         19           2
 Q glutamine           2.7          3           1
 R arginine           19.1         21           3
 S serine              9.1         10           1
 T threonine           2.7          3           1
 V valine              3.6          4           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347591 
LOC100292324          0.985   PREDICTED: hypothetical protein 
LOC100287849          0.985   PREDICTED: hypothetical protein XP_002343395 
AGRN                  0.069   agrin 
C17orf65              0.069   hypothetical protein LOC339201 
C4orf48               0.059   hypothetical protein LOC401115 
LOC100290265          0.059   PREDICTED: hypothetical protein XP_002346787 
LOC100292793          0.059   PREDICTED: hypothetical protein 
LOC100290071          0.059   PREDICTED: hypothetical protein XP_002347957 
LOC100287600          0.059   PREDICTED: hypothetical protein XP_002343679 
LOC729370             0.054   PREDICTED: hypothetical protein 
RCOR2                 0.054   REST corepressor 2 
CEBPD                 0.054   CCAAT/enhancer binding protein delta 
WIPF1                 0.049   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.049   WAS/WASL interacting protein family, member 1 
C15orf39              0.049   hypothetical protein LOC56905 
ARID1B                0.049   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.049   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.049   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
NKX1-1                0.049   PREDICTED: NK1 homeobox 1 
LOC100287250          0.049   PREDICTED: hypothetical protein XP_002344493 
LOC100288203          0.049   PREDICTED: hypothetical protein XP_002343373 
SYNJ1                 0.044   synaptojanin 1 isoform a 
SYNJ1                 0.044   synaptojanin 1 isoform b 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
LOC729570             0.044   PREDICTED: hypothetical protein 
LOC729570             0.044   PREDICTED: hypothetical protein 
FLJ22184              0.044   PREDICTED: hypothetical protein LOC80164 
LOC729570             0.044   PREDICTED: hypothetical protein 
TENC1                 0.044   tensin like C1 domain containing phosphatase isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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