Guide to the Human Genome
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Name: LOC100287849 Sequence: fasta or formatted (110aa) NCBI GI: 239745240
Description:

PREDICTED: hypothetical protein XP_002343395

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         16           2
 C cysteine            2.7          3           1
 D aspartate           0.9          1           1
 E glutamate           3.6          4           2
 F phenylalanine       0.9          1           1
 G glycine             3.6          4           1
 H histidine           1.8          2           1
 I isoleucine          0.0          0           0
 K lysine              1.8          2           1
 L leucine            10.0         11           2
 M methionine          2.7          3           1
 N asparagine          1.8          2           1
 P proline            17.3         19           2
 Q glutamine           2.7          3           1
 R arginine           18.2         20           3
 S serine              9.1         10           1
 T threonine           2.7          3           1
 V valine              3.6          4           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343395 
LOC100292324          1.000   PREDICTED: hypothetical protein 
LOC100291333          0.980   PREDICTED: hypothetical protein XP_002347591 
C17orf65              0.069   hypothetical protein LOC339201 
AGRN                  0.069   agrin 
TBKBP1                0.069   TBK1 binding protein 1 
C4orf48               0.059   hypothetical protein LOC401115 
RCOR2                 0.059   REST corepressor 2 
CEBPD                 0.054   CCAAT/enhancer binding protein delta 
C15orf39              0.049   hypothetical protein LOC56905 
LOC100287250          0.049   PREDICTED: hypothetical protein XP_002344493 
LOC100288203          0.049   PREDICTED: hypothetical protein XP_002343373 
LOC729370             0.049   PREDICTED: hypothetical protein 
ARID1B                0.049   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.049   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.049   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
LOC100290265          0.044   PREDICTED: hypothetical protein XP_002346787 
FLJ22184              0.044   PREDICTED: hypothetical protein LOC80164 
LOC100289743          0.044   PREDICTED: hypothetical protein XP_002348163 
WIPF1                 0.044   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.044   WAS/WASL interacting protein family, member 1 
LOC100292793          0.039   PREDICTED: hypothetical protein 
LOC100291890          0.039   PREDICTED: hypothetical protein XP_002344521 
LOC100290071          0.039   PREDICTED: hypothetical protein XP_002347957 
LOC100289901          0.039   PREDICTED: hypothetical protein XP_002347167 
LOC100130506          0.039   PREDICTED: hypothetical protein 
LOC643355             0.039   PREDICTED: hypothetical protein 
LOC100287600          0.039   PREDICTED: hypothetical protein XP_002343679 
LOC100288618          0.039   PREDICTED: hypothetical protein XP_002344285 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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