Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC728080 Sequence: fasta or formatted (632aa) NCBI GI: 113425145
Description:

PREDICTED: similar to Golgin subfamily A member 8-like protein 2 isoform 3

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [595aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 2 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         56           3
 C cysteine            1.6         10           2
 D aspartate           3.3         21           1
 E glutamate          13.3         84           3
 F phenylalanine       1.3          8           1
 G glycine             5.5         35           3
 H histidine           4.0         25           2
 I isoleucine          2.4         15           2
 K lysine              7.8         49           3
 L leucine            11.1         70           2
 M methionine          1.6         10           1
 N asparagine          3.6         23           2
 P proline             4.7         30           2
 Q glutamine           9.5         60           2
 R arginine            6.3         40           4
 S serine              6.8         43           2
 T threonine           3.2         20           1
 V valine              3.3         21           2
 W tryptophan          0.9          6           1
 Y tyrosine            0.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Golgin subfamily A member 8-l... 
LOC728047             0.997   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.995   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.979   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653720             0.926   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.906   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.904   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653125             0.897   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.854   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.854   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.850   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.837   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653073             0.816   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653061             0.807   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.787   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.768   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.768   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653125             0.762   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.722   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC390561             0.721   PREDICTED: similar to hect domain and RLD 2 
LOC653061             0.711   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA8A               0.604   golgi autoantigen, golgin subfamily a, 8A 
GOLGA8B               0.603   golgi autoantigen, golgin subfamily a, 8B 
LOC390561             0.559   PREDICTED: similar to hect domain and RLD 2 
LOC390561             0.537   PREDICTED: similar to hect domain and RLD 2 
GOLGA8E               0.526   golgi autoantigen, golgin subfamily a, 8E 
GOLGA8G               0.514   golgi autoantigen, golgin subfamily a, 8G 
LOC653061             0.508   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA6                0.338   golgi autoantigen, golgin subfamily a, 6 
GOLGA6C               0.337   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press