Guide to the Human Genome
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Name: LOC100287962 Sequence: fasta or formatted (86aa) NCBI GI: 239745005
Description:

PREDICTED: hypothetical protein XP_002343329

Not currently referenced in the text

Other entries for this name:
alt mRNA {86aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5          9           1
 C cysteine            1.2          1           1
 D aspartate           0.0          0           0
 E glutamate          12.8         11           3
 F phenylalanine       3.5          3           1
 G glycine            12.8         11           1
 H histidine           3.5          3           1
 I isoleucine          3.5          3           1
 K lysine              1.2          1           1
 L leucine             8.1          7           2
 M methionine          3.5          3           1
 N asparagine          0.0          0           0
 P proline             9.3          8           2
 Q glutamine           1.2          1           1
 R arginine            8.1          7           3
 S serine              9.3          8           2
 T threonine           4.7          4           1
 V valine              4.7          4           1
 W tryptophan          2.3          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343329 
LOC100291697          1.000   PREDICTED: hypothetical protein XP_002344838 
LOC100287962          1.000   PREDICTED: hypothetical protein 
LOC100293621          0.045   PREDICTED: hypothetical protein 
LOC100291471          0.045   PREDICTED: hypothetical protein XP_002347034 
LOC100289309          0.045   PREDICTED: hypothetical protein XP_002342886 
SFTPD                 0.032   pulmonary surfactant-associated protein D precursor ...
COL1A1                0.026   alpha 1 type I collagen preproprotein 
LOC100292296          0.026   PREDICTED: hypothetical protein 
LOC100290476          0.026   PREDICTED: hypothetical protein XP_002347412 
C1orf92               0.026   hypothetical protein LOC149499 
CHST13                0.019   carbohydrate sulfotransferase 13 
ZNF696                0.019   zinc finger protein 696 
ZNF598                0.019   zinc finger protein 598 
MCM3AP                0.019   minichromosome maintenance complex component 3 assoc...
COL3A1                0.019   collagen type III alpha 1 preproprotein 
COL5A3                0.019   collagen, type V, alpha 3 preproprotein 
COL4A2                0.019   alpha 2 type IV collagen preproprotein 
COL1A2                0.013   alpha 2 type I collagen 
DONSON                0.013   downstream neighbor of SON 
BFSP1                 0.013   filensin isoform 1 
LOC100291777          0.013   PREDICTED: similar to DMBT1 isoform 1 
LOC100291777          0.013   PREDICTED: similar to DMBT1 isoform 2 
LOC100130840          0.013   PREDICTED: hypothetical protein 
LOC100130840          0.013   PREDICTED: hypothetical protein 
LOC100130840          0.013   PREDICTED: hypothetical protein 
COL7A1                0.013   alpha 1 type VII collagen precursor 
COL18A1               0.013   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.013   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.013   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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