Guide to the Human Genome
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Name: LOC100287070 Sequence: fasta or formatted (368aa) NCBI GI: 239744970
Description:

PREDICTED: hypothetical protein XP_002343319

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         47           2
 C cysteine            3.5         13           2
 D aspartate           3.0         11           1
 E glutamate           3.3         12           2
 F phenylalanine       2.7         10           2
 G glycine             8.2         30           2
 H histidine           2.4          9           1
 I isoleucine          2.2          8           1
 K lysine              2.2          8           1
 L leucine            10.3         38           4
 M methionine          0.5          2           1
 N asparagine          0.3          1           1
 P proline            10.3         38           3
 Q glutamine           3.0         11           1
 R arginine           12.2         45           3
 S serine             12.2         45           2
 T threonine           3.5         13           2
 V valine              4.1         15           2
 W tryptophan          2.7         10           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343319 
LOC730183             0.023   PREDICTED: hypothetical protein 
BLOC1S3               0.020   biogenesis of lysosomal organelles complex-1, subuni...
C1orf116              0.020   specifically androgen-regulated protein isoform 2 [...
C1orf116              0.020   specifically androgen-regulated protein isoform 1 [...
CASKIN1               0.019   CASK interacting protein 1 
LOC400236             0.019   PREDICTED: hypothetical protein 
LOC400236             0.019   PREDICTED: hypothetical protein 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
PHLDB3                0.018   pleckstrin homology-like domain, family B, member 3...
LOC100290265          0.015   PREDICTED: hypothetical protein XP_002346787 
LOC100292589          0.015   PREDICTED: hypothetical protein 
LOC100290121          0.015   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.015   PREDICTED: hypothetical protein XP_002342721 
LOC100289242          0.015   PREDICTED: hypothetical protein XP_002342243 
LOC100292934          0.014   PREDICTED: hypothetical protein 
EPHB4                 0.014   EPH receptor B4 precursor 
LOC100291743          0.014   PREDICTED: hypothetical protein XP_002344931 
LOC100288859          0.014   PREDICTED: hypothetical protein XP_002343508 
LOC100129098          0.014   PREDICTED: hypothetical protein 
DACT3                 0.014   thymus expressed gene 3-like 
KIAA0284              0.014   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.014   hypothetical protein LOC283638 isoform 1 
DCAF10                0.012   WD repeat domain 32 
BAZ1B                 0.012   bromodomain adjacent to zinc finger domain, 1B [Homo...
LOC100291914          0.012   PREDICTED: hypothetical protein XP_002345991 
LOC100293235          0.012   PREDICTED: hypothetical protein 
LOC100290611          0.012   PREDICTED: hypothetical protein XP_002346841 
LOC100291469          0.012   PREDICTED: hypothetical protein XP_002346693 
LOC100287467          0.012   PREDICTED: hypothetical protein XP_002342727 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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