Guide to the Human Genome
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Name: LOC730183 Sequence: fasta or formatted (301aa) NCBI GI: 169210434
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {240aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.9         48           3
 C cysteine            3.0          9           1
 D aspartate           1.3          4           1
 E glutamate           5.6         17           2
 F phenylalanine       1.7          5           1
 G glycine            11.6         35           3
 H histidine           2.7          8           1
 I isoleucine          0.7          2           1
 K lysine              2.3          7           1
 L leucine             9.3         28           2
 M methionine          0.7          2           1
 N asparagine          0.3          1           1
 P proline            10.6         32           3
 Q glutamine           2.3          7           1
 R arginine           12.3         37           2
 S serine              7.0         21           2
 T threonine           7.6         23           8
 V valine              2.7          8           1
 W tryptophan          2.0          6           1
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730183             0.580   PREDICTED: hypothetical protein 
LOC643355             0.049   PREDICTED: hypothetical protein 
LOC643355             0.049   PREDICTED: hypothetical protein 
FLJ31945              0.039   PREDICTED: hypothetical protein 
APC2                  0.035   adenomatosis polyposis coli 2 
LOC729370             0.034   PREDICTED: hypothetical protein 
DACT3                 0.032   thymus expressed gene 3-like 
KIF26A                0.030   kinesin family member 26A 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.028   PREDICTED: hypothetical protein LOC80164 
FLJ37078              0.028   hypothetical protein LOC222183 
LOC100293719          0.028   PREDICTED: hypothetical protein 
LOC100293589          0.028   PREDICTED: hypothetical protein 
LOC100291195          0.028   PREDICTED: hypothetical protein XP_002346923 
LOC100287070          0.028   PREDICTED: hypothetical protein XP_002343319 
LOC100287834          0.028   PREDICTED: hypothetical protein XP_002342771 
LOC100287704          0.028   PREDICTED: hypothetical protein XP_002342770 
LOC100287834          0.028   PREDICTED: hypothetical protein 
LOC100287704          0.028   PREDICTED: hypothetical protein 
LOC338758             0.027   PREDICTED: hypothetical protein 
NKX1-1                0.027   PREDICTED: NK1 homeobox 1 
FLJ31945              0.027   PREDICTED: hypothetical protein 
LOC338758             0.027   PREDICTED: hypothetical protein 
FLJ31945              0.027   PREDICTED: hypothetical protein 
LOC338758             0.027   PREDICTED: hypothetical protein 
COL7A1                0.027   alpha 1 type VII collagen precursor 
TAF4                  0.027   TBP-associated factor 4 
PANK1                 0.025   pantothenate kinase 1 isoform alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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