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Search of human proteins with 239744848
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744848 PREDICTED: hypothetical protein XP_002344119 [Homo
sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756058 PREDICTED: hypothetical protein XP_002344788 [Homo ... 418 e-117
gi|239750551 PREDICTED: hypothetical protein [Homo sapiens] 418 e-117
gi|239744848 PREDICTED: hypothetical protein XP_002344119 [Homo ... 418 e-117
gi|110832843 TBP-associated factor 4 [Homo sapiens] 42 4e-04
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 38 0.005
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 37 0.008
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 37 0.008
gi|118344450 cell death inducing protein [Homo sapiens] 37 0.008
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 37 0.011
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 37 0.014
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 37 0.014
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 37 0.014
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 37 0.014
gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo ... 36 0.024
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 36 0.024
gi|18959210 WIRE protein [Homo sapiens] 36 0.024
gi|130502140 NEZHA isoform 2 [Homo sapiens] 35 0.031
gi|122937255 NEZHA isoform 1 [Homo sapiens] 35 0.031
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 35 0.031
gi|45387951 transmembrane protein 108 [Homo sapiens] 35 0.031
gi|210147493 transmembrane protein 108 [Homo sapiens] 35 0.031
gi|171543895 ataxin 2 [Homo sapiens] 35 0.041
gi|228008410 BEN domain containing 4 isoform b [Homo sapiens] 35 0.041
gi|148762950 BEN domain containing 4 isoform a [Homo sapiens] 35 0.041
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.053
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 34 0.070
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 34 0.070
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 34 0.070
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 34 0.070
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 34 0.070
>gi|239756058 PREDICTED: hypothetical protein XP_002344788 [Homo
sapiens]
Length = 196
Score = 418 bits (1074), Expect = e-117
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60
MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR
Sbjct: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60
Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120
GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG
Sbjct: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120
Query: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180
AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS
Sbjct: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180
Query: 181 RRRCLRAEPAAAAAPN 196
RRRCLRAEPAAAAAPN
Sbjct: 181 RRRCLRAEPAAAAAPN 196
>gi|239750551 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 418 bits (1074), Expect = e-117
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60
MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR
Sbjct: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60
Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120
GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG
Sbjct: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120
Query: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180
AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS
Sbjct: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180
Query: 181 RRRCLRAEPAAAAAPN 196
RRRCLRAEPAAAAAPN
Sbjct: 181 RRRCLRAEPAAAAAPN 196
>gi|239744848 PREDICTED: hypothetical protein XP_002344119 [Homo
sapiens]
Length = 196
Score = 418 bits (1074), Expect = e-117
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60
MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR
Sbjct: 1 MHCHRFPHNNRWFLHTKGREMLQQTLESAASSYAFFCEGPVPKLLGGSKCAFYLLCHLHR 60
Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120
GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG
Sbjct: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEG 120
Query: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180
AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS
Sbjct: 121 AGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGS 180
Query: 181 RRRCLRAEPAAAAAPN 196
RRRCLRAEPAAAAAPN
Sbjct: 181 RRRCLRAEPAAAAAPN 196
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 41.6 bits (96), Expect = 4e-04
Identities = 39/149 (26%), Positives = 50/149 (33%), Gaps = 38/149 (25%)
Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPP--------GQWRTPG 115
+P PPPPPA + + PP G P+ PP+A PP P
Sbjct: 265 APAAAPPPPPPAPATLARPP-----GHPAGPPTAA-----PAVPPPAAAQNGGSAGAAPA 314
Query: 116 DEPEGAGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPP------- 168
P G GV P G A APAP + + + PP
Sbjct: 315 PAPAAGGPAGVSGQPG-----------PGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAA 363
Query: 169 --PPSAAATTALGSRRRCLRAEPAAAAAP 195
P S AA+ +G + PAA P
Sbjct: 364 SGPASTAASMVIGPTMQGALPSPAAVPPP 392
Score = 30.4 bits (67), Expect = 1.0
Identities = 43/144 (29%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 61 GQLSPTQLWPPPPPASSGSSHP---PAWVRAGRPSPPPS-----ALLLAVFTTFPPGQWR 112
G P PPP S+GS P A V AG P P P+ A A+ PG
Sbjct: 118 GPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG-PEPAPAGPAKPAGPAALAARAGPGPGP 176
Query: 113 TPGDEPEGAGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSA 172
PG P G G G A ++ APA L+ L P P A
Sbjct: 177 GPGPGP-GPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALL---PLPKPA 232
Query: 173 AATTALGSRRRCLRAEPAAAAAPN 196
A T + + A P A AAP+
Sbjct: 233 APGTVIQTPPFVGAAAPPAPAAPS 256
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 38.1 bits (87), Expect = 0.005
Identities = 43/149 (28%), Positives = 55/149 (36%), Gaps = 15/149 (10%)
Query: 50 CAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWV--RAGRPSPPPSALL--LAVFTT 105
C FY LC G P+ PPP + P W+ R G PP A
Sbjct: 20 CLFYALC-TRLGDSGPSS----PPPVRPSGNPEPGWLESREGLAHPPQGLAPPPTAGNRP 74
Query: 106 FPPGQWRTPGDEPE-GAGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLL 164
P + P PE GAGR G A + +R + VR A+ R R R +
Sbjct: 75 HPTRKCTFPVPSPELGAGREGEVAGVSACGRRCAVLGVRAAARGQLNSRTAPRDRHRGV- 133
Query: 165 RCPPPPSAAATTALGSRRRCLRAEPAAAA 193
P TALG+ LR+ P A +
Sbjct: 134 ----GPDPGRETALGTATLSLRSSPTAGS 158
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 37.4 bits (85), Expect = 0.008
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 65 PTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAG 122
P +W P A G PPA GR +PPP + + PPG + P P+G G
Sbjct: 232 PQGMWVPAGQAIGGYGPPPA----GRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 37.4 bits (85), Expect = 0.008
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 65 PTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAG 122
P +W P A G PPA GR +PPP + + PPG + P P+G G
Sbjct: 232 PQGMWVPAGQAIGGYGPPPA----GRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYG 285
>gi|118344450 cell death inducing protein [Homo sapiens]
Length = 208
Score = 37.4 bits (85), Expect = 0.008
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 61 GQLSPTQLWPPP----PPASSGSSHPPAWVRAGRPSPPPSAL---LLAVFTTFPPGQWRT 113
G+ SP + PPP PPA G PP + G P P P + + A T PPG +
Sbjct: 29 GRSSPAVMQPPPGMPLPPADIG---PPPYEPPGHPMPQPGFIPPHMSADGTYMPPGFYPP 85
Query: 114 PGDEP 118
PG P
Sbjct: 86 PGPHP 90
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 37.0 bits (84), Expect = 0.011
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQ 110
PPPPP +SG PPA R G P PPPS A PP +
Sbjct: 290 PPPPPHNSGPPPPPARGR-GAPPPPPSRAPTAAPPPPPPSR 329
Score = 35.8 bits (81), Expect = 0.024
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 65 PTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLA-VFTTFPPGQWRTPG-DEPEGAG 122
P +++PPPPPA P+ +G P PPPS L + V PP PG P G
Sbjct: 339 PNRMYPPPPPAL------PSSAPSGPPPPPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLP 392
Query: 123 RGGVHASP 130
G H P
Sbjct: 393 SDGDHQVP 400
Score = 33.9 bits (76), Expect = 0.091
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 65 PTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRG 124
P++ PPPPP +S PP GR +PPP PP + T P R
Sbjct: 282 PSRGGPPPPPPPPHNSGPPPPPARGRGAPPP-----------PPSRAPTAAPPPPPPSRP 330
Query: 125 GVHASP 130
V P
Sbjct: 331 SVAVPP 336
Score = 30.8 bits (68), Expect = 0.77
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPS 96
PPPPP+ G PP P PPP+
Sbjct: 278 PPPPPSRGGPPPPPPPPHNSGPPPPPA 304
Score = 30.4 bits (67), Expect = 1.0
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 65 PTQLWPPPPPA-SSGSSHPP--AWVRAGRPSPPPSALLLAV-----FTTFPPGQWRTPGD 116
P PPPPPA G+ PP A P PPPS +AV +PP P
Sbjct: 294 PHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSS 353
Query: 117 EPEG 120
P G
Sbjct: 354 APSG 357
Score = 30.4 bits (67), Expect = 1.0
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGR 123
+PT PPPPP+ + PP P PPP A+ ++ P G P P G
Sbjct: 317 APTAAPPPPPPSRPSVAVPPPPPNRMYPPPPP-----ALPSSAPSG---PPPPPPSVLGV 368
Query: 124 GGVHASP 130
G V P
Sbjct: 369 GPVAPPP 375
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 36.6 bits (83), Expect = 0.014
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSP--------PPSALLLAVFTTFPPGQWR 112
GQ T + P PP + G PP + R G P P PP+ L AV PPG
Sbjct: 1065 GQKGETVVGPQGPPGAPGLPGPPGFGRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPG 1124
Query: 113 TPG 115
PG
Sbjct: 1125 QPG 1127
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 36.6 bits (83), Expect = 0.014
Identities = 39/133 (29%), Positives = 49/133 (36%), Gaps = 32/133 (24%)
Query: 60 RGQLSPTQLWPPPPPAS--SGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDE 117
RG P Q PPPPPA S PPA+ P PPP V ++F PG +
Sbjct: 827 RGIPPPPQTAPPPPPAPYYFDSGPPPAF----SPPPPPGRAYDTVRSSFKPGL-----EA 877
Query: 118 PEGAGRGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLR--------CPPP 169
GAG G++ A P P +R R + +L+ P P
Sbjct: 878 RLGAGAAGLYEPGA-------------ALGPLPYPERQKRARSMIILQDSAPESGDAPRP 924
Query: 170 PSAAATTALGSRR 182
P AA RR
Sbjct: 925 PPAATPPERPKRR 937
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 36.6 bits (83), Expect = 0.014
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 12/141 (8%)
Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGR 123
SP P P A + +S PP G P+P P L P G W PGD P+ G
Sbjct: 380 SPNSEPPTPKTAWAETSRPPE-TEPGPPAPKPP---LPPPHRGPAGNWGPPGDYPDRGGP 435
Query: 124 GGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTAL----- 178
+P + + ++++ A +RRR + R AA L
Sbjct: 436 PCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDE 495
Query: 179 --GSRRRCLRAEPAA-AAAPN 196
G+ + L+AEPAA AAP+
Sbjct: 496 KFGAPDKRLKAEPAAPPAAPS 516
Score = 28.5 bits (62), Expect = 3.8
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPE 119
P PPA+ + PP V P+PP PP TP EPE
Sbjct: 508 PAAPPAAPSTPAPPPAVPKELPAPPAP----------PPASAPTPETEPE 547
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 36.6 bits (83), Expect = 0.014
Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHAS 129
PPPPP S+ A + P P A L++V T G +P D VH++
Sbjct: 598 PPPPPLGPHSNRTTPPESAPQNGPSPMAALMSVADTL--GTAHSPKD------GSSVHST 649
Query: 130 PAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSA 172
A + + V A V RL R L L PPPPSA
Sbjct: 650 TASARRNSSSPV--SPASVPGQRRLASRNGDLNLQVAPPPPSA 690
Score = 28.9 bits (63), Expect = 2.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 70 PPPPPASSGSSHPPAWVRAGRPSPP 94
PPPPP + GS PP G P P
Sbjct: 272 PPPPPHALGSRGPPTPAPPGAPGGP 296
Score = 27.7 bits (60), Expect = 6.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 167 PPPPSAAATTALGSRRRCLRAEPAAAAA 194
PPPP T AL ++ A AAAAA
Sbjct: 72 PPPPVGVKTVALSAKEAAAAAAAAAAAA 99
>gi|239743839 PREDICTED: hypothetical protein XP_002342967 [Homo
sapiens]
Length = 761
Score = 35.8 bits (81), Expect = 0.024
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 60 RGQLSPTQLWPPPPP---ASSGSSHPPAWVRAGRPSPPPSALLLA 101
RG L T +PPPPP ++ S PP W+ A R PP+A A
Sbjct: 207 RGFLPLTAFYPPPPPRLFVAAAFSPPPPWLSARRGFLPPAAAAAA 251
Score = 30.8 bits (68), Expect = 0.77
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 40 PVPKLLGGSKCAFYL---LC-HLHRGQLSPTQLWPPPPPASSGSSHPPAWVRA 88
P P+L + F L C H RG L T +PPPPP + PP W+ A
Sbjct: 454 PPPRLFHPRRRGFLLDPAFCPHRRRGFLPATAFYPPPPPRL--FAPPPPWLFA 504
Score = 30.0 bits (66), Expect = 1.3
Identities = 51/196 (26%), Positives = 63/196 (32%), Gaps = 66/196 (33%)
Query: 26 LESAASSYA-----FFCEGPVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPP------- 73
L SAA++++ F G +P C LL RG L PT PPPP
Sbjct: 122 LFSAAAAFSPPPRLFPHRGFLPPPAASGLCPPRLLIPYRRGFLPPT---PPPPQRLFARP 178
Query: 74 -----PASSGSSHPPA-WVRAG---------------RPSPPPSALLLAVFTTFPPGQW- 111
PA++ + PP + R G P PPP + A F+ PP W
Sbjct: 179 GFLPTPAAATAFCPPRLFARPGFLPPHRRGFLPLTAFYPPPPPRLFVAAAFS--PPPPWL 236
Query: 112 --RTPGDEPEGAGRGGVHASP---------------AFFLQRTLYMVVRGRAKVAPAPRL 154
R P A SP A F L+ R P PRL
Sbjct: 237 SARRGFLPPAAAAAAAAFCSPTAAAFSPPPPWLFVAATFCSTRLFAPPPPRLFAPPPPRL 296
Query: 155 LQRRRRLQLLRCPPPP 170
PPPP
Sbjct: 297 F----------APPPP 302
Score = 27.3 bits (59), Expect = 8.5
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 16/53 (30%)
Query: 34 AFFCEGPVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWV 86
A FC P+L +C F+ PT L+ PPPP + PP W+
Sbjct: 565 AAFC---APRLFAPCRCGFF-----------PTALFVPPPPRL--FAPPPPWL 601
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 35.8 bits (81), Expect = 0.024
Identities = 45/163 (27%), Positives = 63/163 (38%), Gaps = 34/163 (20%)
Query: 40 PVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALL 99
P+P L GG + + H G P PPPP + HPP G PPP
Sbjct: 400 PLPSLTGGH--GGHPMQHNPNGP--PPPWMQPPPPPMNQGPHPP-----GHHGPPPMDQY 450
Query: 100 LAVFTTFPPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMV------VRGRAKVAPAPR 153
L G P G+G +H + M+ G+ P+
Sbjct: 451 L--------------GSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGP 496
Query: 154 LLQRRRRLQLLRCPPPPSA--AATTALGSRRRCLRAEPAAAAA 194
L +++ Q PPPPS+ A++T L ++R L PAAA A
Sbjct: 497 LPPWQQQQQQPPPPPPPSSSMASSTPLPWQQRSL---PAAAMA 536
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 35.8 bits (81), Expect = 0.024
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 58 LHRGQLSPTQLWPPPPPASSG----SSHPPAWVR------AGRPSPPPSALLLAVFTTFP 107
LHR P + PPPP S+ S+ PP R A P PPP A P
Sbjct: 283 LHRKTPGPVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPPPVIRNGARDAPPP 342
Query: 108 PGQWRTPGDEPEGAGR 123
P +R G EP G+
Sbjct: 343 PPPYRMHGSEPPSRGK 358
Score = 32.3 bits (72), Expect = 0.26
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPS 96
PPPPP S PP+ G+P PPPS
Sbjct: 341 PPPPPYRMHGSEPPS---RGKPPPPPS 364
Score = 29.6 bits (65), Expect = 1.7
Identities = 41/144 (28%), Positives = 52/144 (36%), Gaps = 41/144 (28%)
Query: 58 LHRGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDE 117
LH G+ P P PPP S P +R G PS LA PP +R P
Sbjct: 217 LHPGREGP----PAPPPVKPPPS--PVNIRTG-----PSGQSLAP----PPPPYRQPPGV 261
Query: 118 PEGAGRGGVHASPAF-----FLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSA 172
P G ++P L R VRG A PPPP++
Sbjct: 262 PNGPSSPTNESAPELPQRHNSLHRKTPGPVRGLA--------------------PPPPTS 301
Query: 173 AATTALGSR-RRCLRAEPAAAAAP 195
A+ + L +R R P+ AAP
Sbjct: 302 ASPSLLSNRPPPPARDPPSRGAAP 325
Score = 27.7 bits (60), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 61 GQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPP 95
G P++ PPPPP+ + + PP P PPP
Sbjct: 350 GSEPPSRGKPPPPPSRTPAGPPP-------PPPPP 377
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 35.4 bits (80), Expect = 0.031
Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 73 PPASSGSSHPPA-WVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHASPA 131
PP + GS+ PPA WV G + P +A P R+PG P + R H PA
Sbjct: 730 PPEAPGSAPPPAAWVIPGPTTGPKAASPSPARRV--PATRRSPGPGPSQSPRSPKHTRPA 787
Query: 132 FFLQRTLYMVVRGRAKVAPAPRL---------LQRRRRLQLLRCPPPPSAAATTALGSRR 182
L V+ V P L +Q R + L PP AA L
Sbjct: 788 ELRLAPLTRVLTPPHDVDSLPHLRKFSPSQVPVQTRSSILLAEETPPEEPAARPGLIEIP 847
Query: 183 RCLRAEPAA 191
A+PAA
Sbjct: 848 LGSLADPAA 856
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 35.4 bits (80), Expect = 0.031
Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 12/129 (9%)
Query: 73 PPASSGSSHPPA-WVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHASPA 131
PP + GS+ PPA WV G + P +A P R+PG P + R H PA
Sbjct: 757 PPEAPGSAPPPAAWVIPGPTTGPKAASPSPARRV--PATRRSPGPGPSQSPRSPKHTRPA 814
Query: 132 FFLQRTLYMVVRGRAKVAPAPRL---------LQRRRRLQLLRCPPPPSAAATTALGSRR 182
L V+ V P L +Q R + L PP AA L
Sbjct: 815 ELRLAPLTRVLTPPHDVDSLPHLRKFSPSQVPVQTRSSILLAEETPPEEPAARPGLIEIP 874
Query: 183 RCLRAEPAA 191
A+PAA
Sbjct: 875 LGSLADPAA 883
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 35.4 bits (80), Expect = 0.031
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 13/47 (27%)
Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGD 116
P PPPA++G+S AW G PS PP+A F PG RTP +
Sbjct: 379 PGPPPATTGTS---AW---GEPSVPPAA-------AFQPGHKRTPSE 412
>gi|45387951 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 35.4 bits (80), Expect = 0.031
Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 60 RGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPE 119
RGQ +PT L PP A+S + P RP PP + + P G
Sbjct: 134 RGQAAPTILLTKPPGATSRPTTAPPRTTTRRPPRPPGSSRKGAGNSSRPVPPAPGGHSRS 193
Query: 120 GAGRGGVHASPAFFLQR----TLYMVVRGR--AKVAPAPRLLQRRRRLQLLRCPPPPSAA 173
G+ G + S Q+ ++ + +G V P P L R L P P
Sbjct: 194 KEGQRGRNPSSTPLGQKRPLGKIFQIYKGNFTGSVEPEPSTLTPRTPLWGYSSSPQPQTV 253
Query: 174 ATTALGS 180
A T + S
Sbjct: 254 AATTVPS 260
>gi|210147493 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 35.4 bits (80), Expect = 0.031
Identities = 33/127 (25%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 60 RGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPE 119
RGQ +PT L PP A+S + P RP PP + + P G
Sbjct: 134 RGQAAPTILLTKPPGATSRPTTAPPRTTTRRPPRPPGSSRKGAGNSSRPVPPAPGGHSRS 193
Query: 120 GAGRGGVHASPAFFLQR----TLYMVVRGR--AKVAPAPRLLQRRRRLQLLRCPPPPSAA 173
G+ G + S Q+ ++ + +G V P P L R L P P
Sbjct: 194 KEGQRGRNPSSTPLGQKRPLGKIFQIYKGNFTGSVEPEPSTLTPRTPLWGYSSSPQPQTV 253
Query: 174 ATTALGS 180
A T + S
Sbjct: 254 AATTVPS 260
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 35.0 bits (79), Expect = 0.041
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHAS 129
P P P S SS PP+ ++G S PP A + PP + P P H S
Sbjct: 551 PWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRPSRPPSHP------SAHGS 604
Query: 130 PAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLR----------CPPPPSAAAT 175
PA M G +++P + R R+ R PPS AAT
Sbjct: 605 PAPVSTMPKRMSSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHNPPSEAAT 660
>gi|228008410 BEN domain containing 4 isoform b [Homo sapiens]
Length = 441
Score = 35.0 bits (79), Expect = 0.041
Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 39/166 (23%)
Query: 38 EGP-VPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWV-----RAGRP 91
EGP VPK+ + R S + +P PA + P V RA P
Sbjct: 10 EGPSVPKI------------YKQRSPYSVLKTFPSKRPALAKRYERPTLVELPHVRAPPP 57
Query: 92 SPPPSALLLAVFTTF---PPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMVVRGRAKV 148
PPP A AV + PP Q++ P G GR AS +
Sbjct: 58 PPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRAAAAASSS-------------SPSC 104
Query: 149 APAPRLLQRRRRLQLLRCPPPPSAAATTALGSRRRCLRAEPAAAAA 194
PA R Q PPP++ A ++ S +R P AAAA
Sbjct: 105 TPATSQGHLRTPAQ-----PPPASPAASSSSSFAAVVRYGPGAAAA 145
>gi|148762950 BEN domain containing 4 isoform a [Homo sapiens]
Length = 534
Score = 35.0 bits (79), Expect = 0.041
Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 39/166 (23%)
Query: 38 EGP-VPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWV-----RAGRP 91
EGP VPK+ + R S + +P PA + P V RA P
Sbjct: 10 EGPSVPKI------------YKQRSPYSVLKTFPSKRPALAKRYERPTLVELPHVRAPPP 57
Query: 92 SPPPSALLLAVFTTF---PPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMVVRGRAKV 148
PPP A AV + PP Q++ P G GR AS +
Sbjct: 58 PPPPFAPHAAVSISSSEPPPQQFQAQSSYPPGPGRAAAAASSS-------------SPSC 104
Query: 149 APAPRLLQRRRRLQLLRCPPPPSAAATTALGSRRRCLRAEPAAAAA 194
PA R Q PPP++ A ++ S +R P AAAA
Sbjct: 105 TPATSQGHLRTPAQ-----PPPASPAASSSSSFAAVVRYGPGAAAA 145
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 34.7 bits (78), Expect = 0.053
Identities = 48/177 (27%), Positives = 66/177 (37%), Gaps = 31/177 (17%)
Query: 40 PVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHP-------PAWVR-AGRP 91
PVPK G + ++ + R L P + PPP P S P PA + + P
Sbjct: 1000 PVPKQEGRT----VVVVNNPRAPLGPVPVRPPPGPELSAQPTPGPVPQVLPASLMVSASP 1055
Query: 92 SPPPSALLLAVFTTFPPGQWRTPGDEPEGAGRGGVHASPAFFLQRT---------LYMVV 142
+ PP + + PPG P +P V SP L T L
Sbjct: 1056 AGPP-----LIPASRPPGPVLLPPLQPNSGSLPQVLPSPLGVLSGTSRPPTPTLSLKPTP 1110
Query: 143 RGRAKVAPAPRLLQRRRRLQLLRCPP----PPSAAATTALGSRRRCLRAEPAAAAAP 195
+++PAP L+ L PP PP+AA TT+ + A PA AP
Sbjct: 1111 PAPVRLSPAPPP-GSSSLLKPLTVPPGYTFPPAAATTTSTTTATATTTAVPAPTPAP 1166
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 34.3 bits (77), Expect = 0.070
Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPP-PSALLLAVFTTFPPGQWRTPGDEPEGAG 122
SP W P P G H P + A P P P+ +T+ P G T AG
Sbjct: 76 SPAHPWTTPQP---GPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPT-----YCAG 127
Query: 123 RGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGSR 181
G A T Y ++V P PRL +RR P P S AA LG R
Sbjct: 128 AGNSRAGGGL----TKYNSAHSSSRV-PRPRLPSQRRGASCGLGPGPESRAARQGLGGR 181
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 34.3 bits (77), Expect = 0.070
Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPP-PSALLLAVFTTFPPGQWRTPGDEPEGAG 122
SP W P P G H P + A P P P+ +T+ P G T AG
Sbjct: 76 SPAHPWTTPQP---GPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPT-----YCAG 127
Query: 123 RGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGSR 181
G A T Y ++V P PRL +RR P P S AA LG R
Sbjct: 128 AGNSRAGGGL----TKYNSAHSSSRV-PRPRLPSQRRGASCGLGPGPESRAARQGLGGR 181
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 34.3 bits (77), Expect = 0.070
Identities = 37/119 (31%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 64 SPTQLWPPPPPASSGSSHPPAWVRAGRPSPP-PSALLLAVFTTFPPGQWRTPGDEPEGAG 122
SP W P P G H P + A P P P+ +T+ P G T AG
Sbjct: 76 SPAHPWTTPQP---GPPHQPGFNPASSPRLPLPADSEPDAYTSAPRGSGPT-----YCAG 127
Query: 123 RGGVHASPAFFLQRTLYMVVRGRAKVAPAPRLLQRRRRLQLLRCPPPPSAAATTALGSR 181
G A T Y ++V P PRL +RR P P S AA LG R
Sbjct: 128 AGNSRAGGGL----TKYNSAHSSSRV-PRPRLPSQRRGASCGLGPGPESRAARQGLGGR 181
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 34.3 bits (77), Expect = 0.070
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 58 LHRGQ----LSPTQLWPPPPPASSGSSHP------PAWVRAGR--PSPPPSALLLAVFTT 105
LH+G+ P + PPPPP SG P P W + + P PPP + +A T
Sbjct: 463 LHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTP 522
Query: 106 FPPGQWRTPGDEPEGAG 122
P Q T G G
Sbjct: 523 LPWQQNTTTTTTSAGTG 539
Score = 31.2 bits (69), Expect = 0.59
Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 29/144 (20%)
Query: 40 PVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALL 99
P+P L GG + + H G P PPPP + HPP G PPP
Sbjct: 400 PLPSLTGGH--GGHPMQHNPNGP--PPPWMQPPPPPMNQGPHPP-----GHHGPPPMDQY 450
Query: 100 LAVFTTFPPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMV------VRGRAKVAPAPR 153
L G P G+G +H + M+ G+ P+
Sbjct: 451 L--------------GSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGP 496
Query: 154 LLQRRRRLQLLRCPPPPSAAATTA 177
L +++ Q PPPPS++ ++
Sbjct: 497 LPPWQQQQQQPPPPPPPSSSMASS 520
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 34.3 bits (77), Expect = 0.070
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 58 LHRGQ----LSPTQLWPPPPPASSGSSHP------PAWVRAGR--PSPPPSALLLAVFTT 105
LH+G+ P + PPPPP SG P P W + + P PPP + +A T
Sbjct: 463 LHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTP 522
Query: 106 FPPGQWRTPGDEPEGAG 122
P Q T G G
Sbjct: 523 LPWQQNTTTTTTSAGTG 539
Score = 31.2 bits (69), Expect = 0.59
Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 29/144 (20%)
Query: 40 PVPKLLGGSKCAFYLLCHLHRGQLSPTQLWPPPPPASSGSSHPPAWVRAGRPSPPPSALL 99
P+P L GG + + H G P PPPP + HPP G PPP
Sbjct: 400 PLPSLTGGH--GGHPMQHNPNGP--PPPWMQPPPPPMNQGPHPP-----GHHGPPPMDQY 450
Query: 100 LAVFTTFPPGQWRTPGDEPEGAGRGGVHASPAFFLQRTLYMV------VRGRAKVAPAPR 153
L G P G+G +H + M+ G+ P+
Sbjct: 451 L--------------GSTPVGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGP 496
Query: 154 LLQRRRRLQLLRCPPPPSAAATTA 177
L +++ Q PPPPS++ ++
Sbjct: 497 LPPWQQQQQQPPPPPPPSSSMASS 520
Score = 28.9 bits (63), Expect = 2.9
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 70 PPPPPASSGSSHPPAWVRAGRPSPPPSALLLAVFTT 105
PPPPP S+G + P P PPP + + F T
Sbjct: 586 PPPPPGSAGMMYAP-------PPPPPPPMDPSNFVT 614
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,637,229
Number of Sequences: 37866
Number of extensions: 787883
Number of successful extensions: 7079
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 409
Number of HSP's that attempted gapping in prelim test: 5435
Number of HSP's gapped (non-prelim): 1628
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.