Guide to the Human Genome
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Name: LOC100287812 Sequence: fasta or formatted (756aa) NCBI GI: 239744725
Description:

PREDICTED: hypothetical protein XP_002343253

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.3         93           3
 C cysteine            3.4         26           2
 D aspartate           1.5         11           1
 E glutamate           6.0         45           2
 F phenylalanine       1.5         11           1
 G glycine            12.4         94           3
 H histidine           2.8         21           1
 I isoleucine          1.1          8           1
 K lysine              2.4         18           1
 L leucine             9.7         73           2
 M methionine          1.2          9           1
 N asparagine          1.3         10           1
 P proline            10.7         81           3
 Q glutamine           7.0         53           3
 R arginine            7.1         54           2
 S serine              7.9         60           2
 T threonine           3.7         28           2
 V valine              5.4         41           2
 W tryptophan          1.7         13           1
 Y tyrosine            0.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343253 
LOC100293922          0.167   PREDICTED: hypothetical protein 
LOC100291358          0.167   PREDICTED: hypothetical protein XP_002347390 
ALPK3                 0.014   alpha-kinase 3 
C6orf174              0.013   hypothetical protein LOC387104 
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.013   PREDICTED: hypothetical protein LOC80164 
LOC100129036          0.012   PREDICTED: hypothetical protein 
LOC339192             0.011   PREDICTED: hypothetical protein 
LOC339192             0.011   PREDICTED: hypothetical protein 
LOC339192             0.011   PREDICTED: hypothetical protein 
CASKIN1               0.011   CASK interacting protein 1 
CIC                   0.011   capicua homolog 
BSN                   0.010   bassoon protein 
ONECUT3               0.010   one cut homeobox 3 
LOC100292370          0.010   PREDICTED: hypothetical protein 
LOC100293596          0.010   PREDICTED: similar to mucin 
LOC100289408          0.010   PREDICTED: hypothetical protein 
LOC100289408          0.010   PREDICTED: hypothetical protein XP_002344217 
GDF7                  0.009   growth differentiation factor 7 preproprotein 
LOC100292576          0.009   PREDICTED: hypothetical protein 
LOC100288860          0.009   PREDICTED: hypothetical protein 
LOC100288860          0.009   PREDICTED: hypothetical protein XP_002343712 
TNKS1BP1              0.009   tankyrase 1-binding protein 1 
NRG1                  0.009   neuregulin 1 isoform GGF2 
LOC100129036          0.009   PREDICTED: hypothetical protein 
LOC100290946          0.009   PREDICTED: hypothetical protein XP_002347121 
LOC100129036          0.009   PREDICTED: hypothetical protein 
LOC100288840          0.009   PREDICTED: hypothetical protein XP_002344246 
LOC100129036          0.009   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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