Guide to the Human Genome
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Search of human proteins with 239744342

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo
sapiens]
         (356 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750031 PREDICTED: hypothetical protein [Homo sapiens]           730   0.0  
gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo ...   730   0.0  
gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]           685   0.0  
gi|47078281 hypothetical protein LOC9679 [Homo sapiens]                35   0.079
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]            34   0.18 
gi|153251865 hypothetical protein LOC84226 [Homo sapiens]              33   0.30 
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re...    33   0.39 
gi|60097902 filaggrin [Homo sapiens]                                   33   0.51 
gi|116517332 STG protein [Homo sapiens]                                33   0.51 
gi|156938343 talin 2 [Homo sapiens]                                    32   0.67 
gi|116812620 hypothetical protein LOC147965 [Homo sapiens]             31   1.5  
gi|239752661 PREDICTED: hypothetical protein [Homo sapiens]            31   1.9  
gi|239741005 PREDICTED: hypothetical protein XP_002342062 [Homo ...    31   1.9  
gi|226437571 abhydrolase domain containing 14A [Homo sapiens]          31   1.9  
gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens]    31   1.9  
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi...    30   3.3  
gi|169165075 PREDICTED: hypothetical protein [Homo sapiens]            30   4.3  
gi|91208420 bassoon protein [Homo sapiens]                             30   4.3  
gi|32698704 tectonin beta-propeller repeat containing 1 [Homo sa...    30   4.3  
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol...    29   5.6  
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol...    29   5.6  
gi|188536004 zinc finger protein 469 [Homo sapiens]                    29   5.6  
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap...    29   5.6  
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap...    29   5.6  
gi|149999371 hypothetical protein LOC91056 [Homo sapiens]              29   5.6  
gi|126352608 elastin isoform e precursor [Homo sapiens]                29   7.4  
gi|126352322 elastin isoform c precursor [Homo sapiens]                29   7.4  
gi|126352700 elastin isoform b precursor [Homo sapiens]                29   7.4  
gi|148833508 notch1 preproprotein [Homo sapiens]                       29   7.4  
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ...    29   7.4  

>gi|239750031 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 356

 Score =  730 bits (1884), Expect = 0.0
 Identities = 356/356 (100%), Positives = 356/356 (100%)

Query: 1   MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA 60
           MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA
Sbjct: 1   MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA 60

Query: 61  LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA 120
           LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA
Sbjct: 61  LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA 120

Query: 121 LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH 180
           LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH
Sbjct: 121 LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH 180

Query: 181 LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK 240
           LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK
Sbjct: 181 LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK 240

Query: 241 RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ 300
           RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ
Sbjct: 241 RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ 300

Query: 301 GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356
           GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH
Sbjct: 301 GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356


>gi|239744342 PREDICTED: hypothetical protein XP_002343123 [Homo
           sapiens]
          Length = 356

 Score =  730 bits (1884), Expect = 0.0
 Identities = 356/356 (100%), Positives = 356/356 (100%)

Query: 1   MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA 60
           MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA
Sbjct: 1   MAVQAAGLSSQRSLPLFLQEVTQIKAHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEA 60

Query: 61  LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA 120
           LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA
Sbjct: 61  LQGLLEDAEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVA 120

Query: 121 LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH 180
           LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH
Sbjct: 121 LQEEVGILQLPGRVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPH 180

Query: 181 LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK 240
           LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK
Sbjct: 181 LQCLLCLVGLVQLEPLLDLLLGLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPK 240

Query: 241 RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ 300
           RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ
Sbjct: 241 RGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQ 300

Query: 301 GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356
           GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH
Sbjct: 301 GASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356


>gi|239755499 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 516

 Score =  685 bits (1767), Expect = 0.0
 Identities = 330/331 (99%), Positives = 331/331 (100%)

Query: 26  AHLDLGIEAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASEL 85
           AHLDLGIEAAQAAAHAALEHGVIIVVG+AQGLLEALQGLLEDAEAQEGIAHAQADLASEL
Sbjct: 186 AHLDLGIEAAQAAAHAALEHGVIIVVGVAQGLLEALQGLLEDAEAQEGIAHAQADLASEL 245

Query: 86  GTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVALQEEVGILQLPGRVDLDHSELHTAT 145
           GTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVALQEEVGILQLPGRVDLDHSELHTAT
Sbjct: 246 GTCPGTRQPKAGLAVGDGLVKLAQLLVAACQVQVALQEEVGILQLPGRVDLDHSELHTAT 305

Query: 146 HLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHLQCLLCLVGLVQLEPLLDLLLGLVL 205
           HLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHLQCLLCLVGLVQLEPLLDLLLGLVL
Sbjct: 306 HLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHLQCLLCLVGLVQLEPLLDLLLGLVL 365

Query: 206 PHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQ 265
           PHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQ
Sbjct: 366 PHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQ 425

Query: 266 SWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARLDLQ 325
           SWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARLDLQ
Sbjct: 426 SWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARLDLQ 485

Query: 326 VRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 356
           VRGSQVSAQPCFFPIKTPLTAASPGSVPEIH
Sbjct: 486 VRGSQVSAQPCFFPIKTPLTAASPGSVPEIH 516


>gi|47078281 hypothetical protein LOC9679 [Homo sapiens]
          Length = 422

 Score = 35.4 bits (80), Expect = 0.079
 Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 277 SWGHMASEECQQQG-HHGPSQQPCQGASSSKWAGLG-------LEVLGGRRARLDLQVRG 328
           S  ++ S  C Q G HH    QPCQG   S   G         L  +GG   RLDLQ   
Sbjct: 172 SRANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGG--GRLDLQRSL 229

Query: 329 SQVSAQPCFFPIKTPLTAASPGSVPEI 355
           S    Q  F     P   ++P S PE+
Sbjct: 230 SCSHEQFSFVEYCPPSANSTPASTPEL 256


>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 36/110 (32%), Positives = 42/110 (38%), Gaps = 16/110 (14%)

Query: 215 TWGDPWWLRASRHSWGRNHSASCP-PKRGNKSSVGWE--PEWGLDGEQAPPWEQSWFSPS 271
           +WGD    RA   S G +  A  P P RG+     W   P     G  AP       SP 
Sbjct: 7   SWGDQAGERARAPSGGGSGQAQRPGPGRGS-----WRRPPRRQRPGPAAP-------SPP 54

Query: 272 AAVAASWGHMASEECQQQGHHGPSQQPCQGAS-SSKWAGLGLEVLGGRRA 320
           A  AA+WG        Q G  G       GA    +  G G  + GGRRA
Sbjct: 55  ARGAAAWGRSGGGPAAQSGGDGGGLPRRAGAEPGGRGGGSGGTMPGGRRA 104


>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
          Length = 1984

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 19/80 (23%)

Query: 231  RNHSAS----CPPKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEEC 286
            R+HS S    C P R N SS               P E+SW SPS     S    +    
Sbjct: 1581 RHHSPSQRSHCSPSRKNHSS---------------PSERSWRSPSQRNHCSPPERSCHSL 1625

Query: 287  QQQGHHGPSQQPCQGASSSK 306
             ++G H PSQ+  +G S  +
Sbjct: 1626 SERGLHSPSQRSHRGPSQRR 1645


>gi|38569493 potassium voltage-gated channel, subfamily H
            (eag-related), member 3 [Homo sapiens]
          Length = 1083

 Score = 33.1 bits (74), Expect = 0.39
 Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 17/116 (14%)

Query: 141  LHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHLQCLLCLVGLVQLEPLLDLL 200
            L  A  L++A H    C +A+     P     LLQ LC              L+P    +
Sbjct: 902  LRQAVQLVLAPHREGPCPRASGEGPCPASTSGLLQPLCVDTG-----ASSYCLQPPAGSV 956

Query: 201  LGLVLPHP---PQALCPTWGDPWWLRASRHS-WGR------NHSASCPPKRGNKSS 246
            L    PHP   P  L   W  PW   AS+ S W R      + S S PP  G+  S
Sbjct: 957  LSGTWPHPRPGPPPLMAPW--PWGPPASQSSPWPRATAFWTSTSDSEPPASGDLCS 1010


>gi|60097902 filaggrin [Homo sapiens]
          Length = 4061

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 225  SRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASE 284
            SRHS  R+H AS        S VG     G      P   ++W S  +  + S GH    
Sbjct: 2527 SRHSGSRHHEASSRADSSGHSQVGQGQSEG------PRTSRNWGSSFSQDSDSQGHSEDS 2580

Query: 285  E----CQQQGHHGPSQQPCQGAS 303
            E       + HHG +Q+  +  S
Sbjct: 2581 ERWSGSASRNHHGSAQEQLRDGS 2603


>gi|116517332 STG protein [Homo sapiens]
          Length = 325

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 239 PKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEE---CQQQGHHGPS 295
           P  G  +   W P WGL    + P E  W   +AA     G    EE           P 
Sbjct: 88  PPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMAAAAEDRLGEALPEELSYLSSAAALAPG 147

Query: 296 QQPCQGASSSKWAGL 310
             P  G SS    GL
Sbjct: 148 SGPLPGESSPDATGL 162


>gi|156938343 talin 2 [Homo sapiens]
          Length = 2542

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 37   AAAHAALEHGVIIVVGIAQGLLEALQGLLE--DAEAQEGIAHAQADLASELGTC----PG 90
            AAAHA L+    ++ G A  + EA Q L+   DAE Q+ +A     ++  L  C    PG
Sbjct: 1148 AAAHAMLDSARDVMEGSAMLIQEAKQALIAPGDAERQQRLAQVAKAVSHSLNNCVNCLPG 1207

Query: 91   TRQPKAGL-AVGDGLVKL 107
             +     L ++G+   KL
Sbjct: 1208 QKDVDVALKSIGESSKKL 1225


>gi|116812620 hypothetical protein LOC147965 [Homo sapiens]
          Length = 349

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 46/144 (31%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 68  AEAQEGIAHAQADLASELGTCPGTRQPKAGLAVGDGL-VKLAQLLVAACQVQVALQEEVG 126
           AEA EG A AQ  LA   G  PG     A      GL V+LA  L     ++   +    
Sbjct: 6   AEAWEGAAVAQDLLALGYGGVPGAASRGASCPDFRGLCVRLAAELATLGALEQQREAGAE 65

Query: 127 ILQLPGRVDLDHSELHTATHLLVAAH----LRVGCDQAAQHAEAPHEVRALLQHLCPHLQ 182
           +L        +   L     LL   H       G D AA   E    +R LL+ LC  LQ
Sbjct: 66  VLSAGDGPGAEEDFLRQLGSLLRELHCPDRALCGGDGAAALREPGAGLR-LLRFLCSELQ 124

Query: 183 C--LLCLVGLVQLEPLLDLLLGLV 204
              LLCL  L+   P   L  G+V
Sbjct: 125 ATRLLCLRSLLDPSPRPPLGEGVV 148


>gi|239752661 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 85

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 10/53 (18%)

Query: 270 PSAAVAASWGHMASEECQQQGHHGPSQQP-------CQGASS---SKWAGLGL 312
           P A+  A WG   S EC+     GP Q P       C+G  +   S+W   GL
Sbjct: 2   PGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGL 54


>gi|239741005 PREDICTED: hypothetical protein XP_002342062 [Homo
           sapiens]
          Length = 85

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 10/53 (18%)

Query: 270 PSAAVAASWGHMASEECQQQGHHGPSQQP-------CQGASS---SKWAGLGL 312
           P A+  A WG   S EC+     GP Q P       C+G  +   S+W   GL
Sbjct: 2   PGASAWARWGDFGSPECKLYHFEGPRQAPQPPVHRGCRGDDAEGRSRWRTWGL 54


>gi|226437571 abhydrolase domain containing 14A [Homo sapiens]
          Length = 271

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 188 VGLVQLEPLLDLLLGLVLPHPPQALCPTWGDP 219
           V L+ L  LL LLL + LP PP+     WGDP
Sbjct: 35  VALLGLSLLLMLLLYVGLPGPPEQTSCLWGDP 66


>gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens]
          Length = 1585

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 15/104 (14%)

Query: 211 ALCPTWG--DPW--WLRASRHSW--GRNHSASC-PPKRGNKSSVGWEPEWGLDGEQAPPW 263
           A CP  G  + W  W   SR      R+   +C PP+ G K+  G E +  L    A P 
Sbjct: 359 ATCPVHGVWEEWGSWSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPV 418

Query: 264 EQSW-----FSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGA 302
           E  W     + P +   A+     S +C      GP+   C GA
Sbjct: 419 EGQWLEWGPWGPCSTSCANGTQQRSRKCSVA---GPAWATCTGA 459


>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
           sapiens]
          Length = 410

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 204 VLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPW 263
           +L  PPQA  P  GDP            N++    P  G     GW     + G + PP 
Sbjct: 53  LLRRPPQAPLPMHGDP-----QPPGLAANNTL---PALGAGGWAGWRGPREVVGREPPPV 104

Query: 264 EQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARL 322
                 P ++V   WG  A+E          S   C+  +  +++ LG  +  G R  L
Sbjct: 105 PPPPPLPPSSVEDDWGGPATEPPASLLSSASSDDFCKEKTEDRYS-LGSSLDSGMRTPL 162


>gi|169165075 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 147

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 31  GIEAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASELGTCPG 90
           G+ +A  AA    +H +   +G+A+G    L  L     AQ+    AQ  +A E G   G
Sbjct: 21  GVNSAWLAALEVRQH-LAAGLGLAEGWQALLAALEAVRAAQQAPEEAQLGIAGEAGGGLG 79

Query: 91  TRQPKAGLAVGDGLVKLAQL--LVAACQVQ 118
            R+  A +AV +GL     L  ++AA  VQ
Sbjct: 80  LRR-GAAVAVAEGLAVAHALGPVLAAVLVQ 108


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 40/131 (30%), Positives = 50/131 (38%), Gaps = 22/131 (16%)

Query: 224  ASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMAS 283
            AS    G   + S P    +K+    +P+  L G QA P  Q   SPS+    S      
Sbjct: 3718 ASDSKKGSRQAHSGPAALQSKAEPQAQPQ--LQGRQAAPGPQQSQSPSSRQIPSGAASRQ 3775

Query: 284  EECQQQGHHGPSQQPCQGASSSKWAGLGLEVLGGRRARLDLQ----VRGSQVSA-QPCFF 338
             + QQQ   G   QP Q A +              +ARL  Q     RGS  +A QP   
Sbjct: 3776 PQTQQQ-QQGLGLQPPQQALT--------------QARLQQQSQPTTRGSAPAASQPAGK 3820

Query: 339  PIKTPLTAASP 349
            P   P TA  P
Sbjct: 3821 PQPGPSTATGP 3831


>gi|32698704 tectonin beta-propeller repeat containing 1 [Homo
            sapiens]
          Length = 1165

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 18/86 (20%)

Query: 202  GLVLPHPPQALCPTWGDPWWLRASRHSWGRNHSASCPPKRGNKSSVGWEPEWGLDGEQAP 261
            G V P  P       GD W+           H  S P +R  + S G    + LD E   
Sbjct: 1013 GSVYPSQPA------GDCWY-----------HIPSPPRQRLKQVSAGQTSVYALD-ENGN 1054

Query: 262  PWEQSWFSPSAAVAASWGHMASEECQ 287
             W +   +PS    +SW H+++  C+
Sbjct: 1055 LWYRQGITPSYPQGSSWEHVSNNVCR 1080


>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1b
           [Homo sapiens]
          Length = 867

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 24/103 (23%)

Query: 227 HSWGRNHSASCPPKR---GNKSSVGWEPEWGLD-------GEQAP----------PWEQS 266
           HS G   S   PP R   G   + G EP  GL+       G +A           P E+ 
Sbjct: 346 HSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERD 405

Query: 267 WFSPSAAVAASWGHMASEE----CQQQGHHGPSQQPCQGASSS 305
            + P+ A  +S     + E    C Q G   P Q+P QGA+ +
Sbjct: 406 IWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGT 448


>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1a
           [Homo sapiens]
          Length = 961

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 24/103 (23%)

Query: 227 HSWGRNHSASCPPKR---GNKSSVGWEPEWGLD-------GEQAP----------PWEQS 266
           HS G   S   PP R   G   + G EP  GL+       G +A           P E+ 
Sbjct: 346 HSRGTEVSEPSPPVRDPEGVTQAPGVEPSNGLEKPARELNGSEAATPRDSPRPGKPDERD 405

Query: 267 WFSPSAAVAASWGHMASEE----CQQQGHHGPSQQPCQGASSS 305
            + P+ A  +S     + E    C Q G   P Q+P QGA+ +
Sbjct: 406 IWPPAQAPTSSQELAGAPEPQGSCAQGGRVAPGQRPAQGATGT 448


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 233  HSASCPPKRGNKSSVGWEPEWGLDGEQAPPWEQSWFSPSAAVAASWGHMASEECQQQGH- 291
            H  +  P+     +V   P+    G+ APP + +W   ++   A+ GH A    +  GH 
Sbjct: 1759 HRGAPAPEAFGSPAVHLAPDLAFQGDGAPPLDATWPFGASPSHAAQGHSAG---RAGGHL 1815

Query: 292  HGPSQQPCQGASSSKWAGLGLEVLGGRRAR 321
            H  + +P  G   +++A  G   L   R R
Sbjct: 1816 HPTAGRP--GFEGNEFAPAGASSLTAPRGR 1843


>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
           sapiens]
          Length = 805

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 249 WEPEWGLDGEQA-PPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKW 307
           W+PEWG+  +   PP +Q W  P+               Q  G   P  +     ++  +
Sbjct: 90  WQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRHIFNQNNHNF 149

Query: 308 AG 309
            G
Sbjct: 150 GG 151


>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
           sapiens]
          Length = 805

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 249 WEPEWGLDGEQA-PPWEQSWFSPSAAVAASWGHMASEECQQQGHHGPSQQPCQGASSSKW 307
           W+PEWG+  +   PP +Q W  P+               Q  G   P  +     ++  +
Sbjct: 90  WQPEWGMHQQPPHPPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRHIFNQNNHNF 149

Query: 308 AG 309
            G
Sbjct: 150 GG 151


>gi|149999371 hypothetical protein LOC91056 [Homo sapiens]
          Length = 821

 Score = 29.3 bits (64), Expect = 5.6
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 30/114 (26%)

Query: 37  AAAHAA---LEHGVIIV------VGIAQGLLEALQGLLEDAEAQEGIAHAQ------ADL 81
           AAAH     L+ G++ V       G+  GL++ LQ L    E  +G  HA+      A L
Sbjct: 506 AAAHCTNWDLQQGLLRVCRALLRAGVRGGLVDLLQVLARQLEDPDGRDHARLYYILLAHL 565

Query: 82  ASELGTCPGTRQPKAGLAVGDGLV--KLAQLLVAACQVQVA---LQEEVGILQL 130
           A+          PK G+A+G  L    LA  LVA  Q  VA   +QE   +++L
Sbjct: 566 AA----------PKLGVALGPSLAAPALASSLVAENQGFVAALMVQEAPALVRL 609


>gi|126352608 elastin isoform e precursor [Homo sapiens]
          Length = 705

 Score = 28.9 bits (63), Expect = 7.4
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 33  EAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASELGTCPGTR 92
           EA  AAA  A ++G++  VG+A G+     G+        G+      LA  +G  PG  
Sbjct: 440 EAQAAAAAKAAKYGLVPGVGVAPGV-----GVAPGVGVAPGVG-----LAPGVGVAPGVG 489

Query: 93  -QPKAGLAVGDGLVKLAQLLVAACQVQVALQ 122
             P  G+A G G   +A    +A +V    Q
Sbjct: 490 VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQ 520


>gi|126352322 elastin isoform c precursor [Homo sapiens]
          Length = 692

 Score = 28.9 bits (63), Expect = 7.4
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 33  EAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASELGTCPGTR 92
           EA  AAA  A ++G++  VG+A G+     G+        G+      LA  +G  PG  
Sbjct: 445 EAQAAAAAKAAKYGLVPGVGVAPGV-----GVAPGVGVAPGVG-----LAPGVGVAPGVG 494

Query: 93  -QPKAGLAVGDGLVKLAQLLVAACQVQVALQ 122
             P  G+A G G   +A    +A +V    Q
Sbjct: 495 VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQ 525


>gi|126352700 elastin isoform b precursor [Homo sapiens]
          Length = 677

 Score = 28.9 bits (63), Expect = 7.4
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 33  EAAQAAAHAALEHGVIIVVGIAQGLLEALQGLLEDAEAQEGIAHAQADLASELGTCPGTR 92
           EA  AAA  A ++G++  VG+A G+     G+        G+      LA  +G  PG  
Sbjct: 430 EAQAAAAAKAAKYGLVPGVGVAPGV-----GVAPGVGVAPGVG-----LAPGVGVAPGVG 479

Query: 93  -QPKAGLAVGDGLVKLAQLLVAACQVQVALQ 122
             P  G+A G G   +A    +A +V    Q
Sbjct: 480 VAPGVGVAPGIGPGGVAAAAKSAAKVAAKAQ 510


>gi|148833508 notch1 preproprotein [Homo sapiens]
          Length = 2555

 Score = 28.9 bits (63), Expect = 7.4
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 294  PSQQPCQGASSSKWAGLGLEVLGGRRARLDLQVRGSQVSAQPCFFPIKTPLTAASPGSVP 353
            P  QP  G SS+    LG   L G  ++ D+Q  G    A     P ++P   A P S+P
Sbjct: 2413 PPPQPHLGVSSAASGHLGRSFLSGEPSQADVQPLGPSSLAVHTILPQESP---ALPTSLP 2469


>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
            sapiens]
          Length = 5033

 Score = 28.9 bits (63), Expect = 7.4
 Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 85   LGTCPGTRQPKAGLAVGDGLVKLAQLLVAA-----------CQVQVALQ-EEVGILQLPG 132
            LGT   T   K   A+G+ L +LA  +  A           C V       E  IL LP 
Sbjct: 3175 LGTTKNTYVEKLRPALGECLARLAAAMPVAFLEPQLNEYNACSVYTTKSPRERAILGLPN 3234

Query: 133  RVDLDHSELHTATHLLVAAHLRVGCDQAAQHAEAPHEVRALLQHLCPHL 181
             V+    ++     L+  A +    +  A++ E PH +   L  LC +L
Sbjct: 3235 SVEEMCPDIPVLERLM--ADIGGLAESGARYTEMPHVIEITLPMLCSYL 3281


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,344,392
Number of Sequences: 37866
Number of extensions: 742770
Number of successful extensions: 2094
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2053
Number of HSP's gapped (non-prelim): 83
length of query: 356
length of database: 18,247,518
effective HSP length: 103
effective length of query: 253
effective length of database: 14,347,320
effective search space: 3629871960
effective search space used: 3629871960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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