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Search of human proteins with 239743879
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743879 PREDICTED: hypothetical protein XP_002342985 [Homo
sapiens]
(216 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239743879 PREDICTED: hypothetical protein XP_002342985 [Homo ... 464 e-131
gi|122937215 prospero homeobox 2 [Homo sapiens] 34 0.11
gi|239756464 PREDICTED: hypothetical protein LOC197350 [Homo sap... 32 0.41
gi|239756603 PREDICTED: hypothetical protein [Homo sapiens] 32 0.54
gi|169210653 PREDICTED: hypothetical protein LOC197350 [Homo sap... 31 0.70
gi|32171215 CREB regulated transcription coactivator 2 [Homo sap... 31 0.92
gi|47578107 delangin isoform B [Homo sapiens] 31 0.92
gi|4557263 ADP-ribosylarginine hydrolase [Homo sapiens] 30 1.2
gi|239756116 PREDICTED: hypothetical protein [Homo sapiens] 30 1.2
gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo ... 30 1.2
gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo sap... 30 1.6
gi|146262007 forkhead box D4-like 6 [Homo sapiens] 30 1.6
gi|157042770 forkhead box D4-like 3 [Homo sapiens] 30 2.0
gi|15147240 brother of CDO [Homo sapiens] 30 2.0
gi|153792780 additional sex combs like 2 [Homo sapiens] 30 2.0
gi|7710121 engrailed homeobox 2 [Homo sapiens] 29 2.7
gi|157502173 hypothetical protein LOC348487 [Homo sapiens] 29 2.7
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 29 3.5
gi|148806902 TBC1 domain family, member 12 [Homo sapiens] 29 3.5
gi|15529976 zinc finger protein 764 [Homo sapiens] 29 3.5
gi|28416436 ADP-ribosylation factor GTPase activating protein 1 ... 28 4.5
gi|27502386 nuclear factor of activated T-cells, cytosolic compo... 28 4.5
gi|91208420 bassoon protein [Homo sapiens] 28 4.5
gi|21735575 junctophilin 1 [Homo sapiens] 28 4.5
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 28 4.5
gi|87196343 PDZ domain containing 2 [Homo sapiens] 28 4.5
gi|4503811 fucosyltransferase 4 [Homo sapiens] 28 5.9
gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo ... 28 5.9
gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo ... 28 5.9
gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo ... 28 5.9
>gi|239743879 PREDICTED: hypothetical protein XP_002342985 [Homo
sapiens]
Length = 216
Score = 464 bits (1194), Expect = e-131
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MALADLDHPPWKGTLQICIPGKPPSVVECFLTEMQCWQQPFLRFLQQPFFLATASLAGSS 60
MALADLDHPPWKGTLQICIPGKPPSVVECFLTEMQCWQQPFLRFLQQPFFLATASLAGSS
Sbjct: 1 MALADLDHPPWKGTLQICIPGKPPSVVECFLTEMQCWQQPFLRFLQQPFFLATASLAGSS 60
Query: 61 SSFNVLIPTRDEDGDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGP 120
SSFNVLIPTRDEDGDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGP
Sbjct: 61 SSFNVLIPTRDEDGDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGP 120
Query: 121 PRSLQQGGSEVLLGQLCSPEPDWLPSSGPKVAKQVFQVAAELLQHPEHFVPSSVPEGCVH 180
PRSLQQGGSEVLLGQLCSPEPDWLPSSGPKVAKQVFQVAAELLQHPEHFVPSSVPEGCVH
Sbjct: 121 PRSLQQGGSEVLLGQLCSPEPDWLPSSGPKVAKQVFQVAAELLQHPEHFVPSSVPEGCVH 180
Query: 181 KPGSTCDGSLKGRAYPSCVPKRDPEHSREESHPLSG 216
KPGSTCDGSLKGRAYPSCVPKRDPEHSREESHPLSG
Sbjct: 181 KPGSTCDGSLKGRAYPSCVPKRDPEHSREESHPLSG 216
>gi|122937215 prospero homeobox 2 [Homo sapiens]
Length = 592
Score = 33.9 bits (76), Expect = 0.11
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 136 LCSPEPDWLPSS---GPKVAKQVFQVAAELLQHPEHFVPSSVPEGCVHKPG--STCDGSL 190
L P P W + GP+V +Q+ + +L EH + ++ P PG T G L
Sbjct: 114 LLMPAPAWDQGNRKGGPRVREQLHLLKQQLRHLQEHILQAAKPRDTAQGPGGCGTGKGPL 173
Query: 191 KGRAYPSCVPKR---DPEHSREESHPLSG 216
+ C P+ D +H + S LSG
Sbjct: 174 SAKQGNGCGPRPWVVDGDHQQGTSKDLSG 202
>gi|239756464 PREDICTED: hypothetical protein LOC197350 [Homo
sapiens]
Length = 432
Score = 32.0 bits (71), Expect = 0.41
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 70 RDEDGDGEGPGDVTAGVSRAAGSP--------SGWEAP--WVQQPRCCRRATPVCCAGQG 119
R+E G G G T V AAG P SG +AP ++QP+ R C A +G
Sbjct: 27 REEGGPGPGLPRGTGLVPGAAGCPRAPCGVCLSGLDAPRGQLRQPQQLVRELSGCRALRG 86
Query: 120 PPR-----------SLQQGGSEVLLGQLCSPEPDW 143
PR SL+ G L +LC P W
Sbjct: 87 CPRVFLLLSSGPGSSLEPGAFLAGLRELCGRSPHW 121
>gi|239756603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 31.6 bits (70), Expect = 0.54
Identities = 42/136 (30%), Positives = 52/136 (38%), Gaps = 28/136 (20%)
Query: 79 PGDVTAGVSRAAG--SPSGW------EAPWVQQ--------PRCCRRAT-PVCCAGQGPP 121
P V G+ R G +P+GW PW P CC R PV G G
Sbjct: 17 PRRVARGLCRRRGVLAPAGWGFLGGGRRPWAVPDPVRLTLFPSCCLRPPEPVQGWGSGGG 76
Query: 122 RSLQQGGSEVLLGQLCSPEPDWLPSSGPKVAKQVFQVAAELLQHPEHF--VPSSVP---- 175
+ G V L +L P P LP + + A ++ AA P F PSSVP
Sbjct: 77 WRKRARGKPVGLRRLPGPAPPSLPPNQARPALRM-STAARPRVKPGRFPRAPSSVPASDD 135
Query: 176 -EGCVHKPGSTCDGSL 190
+GC P S G L
Sbjct: 136 WKGC---PCSAAFGDL 148
>gi|169210653 PREDICTED: hypothetical protein LOC197350 [Homo
sapiens]
Length = 432
Score = 31.2 bits (69), Expect = 0.70
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 21/95 (22%)
Query: 70 RDEDGDGEGPGDVTAGVSRAAGSP--------SGWEAP--WVQQPRCCRRATPVCCA--- 116
R+E G G G T V AAG P SG +AP ++QP+ R C A
Sbjct: 27 REEGGPGPGLPRGTGLVPGAAGCPRAPCGVCLSGLDAPRGQLRQPQQLVRELSGCRALRG 86
Query: 117 --------GQGPPRSLQQGGSEVLLGQLCSPEPDW 143
GP SL+ G L +LC P W
Sbjct: 87 CPKVFLLLSSGPGSSLEPGAFLAGLRELCGRSPHW 121
>gi|32171215 CREB regulated transcription coactivator 2 [Homo
sapiens]
Length = 693
Score = 30.8 bits (68), Expect = 0.92
Identities = 38/140 (27%), Positives = 50/140 (35%), Gaps = 30/140 (21%)
Query: 85 GVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGPPRSLQQGGSEV-LLGQLCSPEPDW 143
G+SR G G++AP + P SLQ S L L SP+P
Sbjct: 318 GISRGMGLGPGYDAPGLHSPLS--------------HPSLQSSLSNPNLQASLSSPQPQL 363
Query: 144 --------LPSSGPKVAKQVFQVAAELLQHPEHFVPSSVPEGCVHKPGSTCDGSLKGRAY 195
LP+S +A+ V + L HP P+ ST L +Y
Sbjct: 364 QGSHSHPSLPASS--LARHVLPTTS--LGHPSLSAPALSSSS---SSSSTSSPVLGAPSY 416
Query: 196 PSCVPKRDPEHSREESHPLS 215
P+ P P H R PLS
Sbjct: 417 PASTPGASPHHRRVPLSPLS 436
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 30.8 bits (68), Expect = 0.92
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 53 TASLAGSSSSFNVLIPTRDEDGDGEGPGDVTAGVSR 88
T+ L G S N T D++ DGE G T+GV R
Sbjct: 2651 TSLLGGGSPKNNTAAETEDDESDGEDRGGGTSGVRR 2686
>gi|4557263 ADP-ribosylarginine hydrolase [Homo sapiens]
Length = 357
Score = 30.4 bits (67), Expect = 1.2
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 72 EDGDGEGPGDVTA--GVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGPPRSLQ 125
ED DG PG + + G P+GW P+ C A C G P Q
Sbjct: 92 EDMDGRAPGGASVHNAMQLKPGKPNGWRIPFNSHEGGCGAAMRAMCIGLRFPHHSQ 147
>gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 67 IPTRDEDGDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGPPRSLQQ 126
+P R D G TAG RAAGS +G CRRA C PR
Sbjct: 136 VPDRSADSSGAAAATATAGSRRAAGSTTG------SVTTSCRRALLNCAL----PRPSST 185
Query: 127 G-GSE 130
G GSE
Sbjct: 186 GYGSE 190
>gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 1.2
Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 11/65 (16%)
Query: 67 IPTRDEDGDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGPPRSLQQ 126
+P R D G TAG RAAGS +G CRRA C PR
Sbjct: 136 VPDRSADSSGAAAATATAGSRRAAGSTTG------SVTTSCRRALLNCAL----PRPSST 185
Query: 127 G-GSE 130
G GSE
Sbjct: 186 GYGSE 190
>gi|206725452 leukocyte receptor cluster (LRC) member 9 [Homo
sapiens]
Length = 501
Score = 30.0 bits (66), Expect = 1.6
Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 77 EGPGDVTAGVSRAAGSPS--GWEAPWVQQPRCCRRATPVCCAGQGPPRSLQQGGSEVLL- 133
E PG++ A RA G+ + G AP + A A R+ GG E
Sbjct: 228 EEPGELEAAQERALGTAADLGTLAPRGRLAGVTEEALKPTAA----TRTTLLGGKEAQAL 283
Query: 134 ----GQLCSPEPDWLPSSGPKVAKQVFQVAAELLQHPEHFVPSSVPE 176
G + E +W P++ P+ + VAA P HFV V E
Sbjct: 284 GVPGGSAETTEAEWGPAAWPEDKRARLSVAAPCQPRPTHFVALMVTE 330
>gi|146262007 forkhead box D4-like 6 [Homo sapiens]
Length = 417
Score = 30.0 bits (66), Expect = 1.6
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 77 EGPGDVTAGVSRAAGSPSGWEAPWVQ--QPRCCRRATPVCCAGQGPPRSLQQGGSEVLLG 134
+G G+ G+ R P G A Q C R P+CC PP LLG
Sbjct: 332 KGSGERVQGLRRVCPRPRGATATCSSDHQACCIPRPLPLCCKCPPPP----------LLG 381
Query: 135 QLCS 138
Q CS
Sbjct: 382 QFCS 385
>gi|157042770 forkhead box D4-like 3 [Homo sapiens]
Length = 417
Score = 29.6 bits (65), Expect = 2.0
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Query: 77 EGPGDVTAGVSRAAGSPSGWEAPWVQ--QPRCCRRATPVCCAGQGPPRSLQQGGSEVLLG 134
+G G+ G+ R P G A Q C R P+CC PP LLG
Sbjct: 332 KGSGERVQGLRRICPRPRGATATCSSDHQACCIPRPLPLCCKCPPPP----------LLG 381
Query: 135 QLCS 138
Q CS
Sbjct: 382 QFCS 385
>gi|15147240 brother of CDO [Homo sapiens]
Length = 1114
Score = 29.6 bits (65), Expect = 2.0
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 10/99 (10%)
Query: 61 SSFNVLIPTRDEDGDGEGPGDV-TAGVSRAAGSP---SGWEAPWVQQPRCCRRATPVCCA 116
S+ +L P D E P V +GV RA SP + W+ P+ P CC PV
Sbjct: 1007 STHQLLQPHHDCCQRQEQPAAVGQSGVRRAPDSPVLEAVWDPPFHSGPPCCLGLVPV--E 1064
Query: 117 GQGPPRSLQQGGSEVL----LGQLCSPEPDWLPSSGPKV 151
P S Q G + +G EP S GP V
Sbjct: 1065 EVDSPDSCQVSGGDWCPQHPVGAYVGQEPGMQLSPGPLV 1103
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 29.6 bits (65), Expect = 2.0
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 24/137 (17%)
Query: 52 ATASLAGSSSSFNVLIPTRDEDGDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRAT 111
A A+ A +++S IP G G+GPG+ G + GSP +
Sbjct: 675 AAAAAAAAAASVGGTIPGPGPGG-GQGPGEGGEGQTARGGSPG---------------SD 718
Query: 112 PVCCAGQGPPRSL----QQGGSEVLLGQLCSPE--PDWLPSSGPKVAKQVFQVAAELLQH 165
V G+GP L +GG+ LL C PE P + P A+ A+L Q
Sbjct: 719 RVSETGKGPTLELAGTGSRGGTRELLP--CGPETQPQSETKTTPSQAQPHSVSGAQLQQT 776
Query: 166 PEHFVPSSVPEGCVHKP 182
P +V C P
Sbjct: 777 PPVPPTPAVSGACTSVP 793
>gi|7710121 engrailed homeobox 2 [Homo sapiens]
Length = 333
Score = 29.3 bits (64), Expect = 2.7
Identities = 42/154 (27%), Positives = 51/154 (33%), Gaps = 35/154 (22%)
Query: 74 GDGEGPGDVTAGVSRAAGSPSGWEAPW---------------VQQPRCCRRA-TPVCCAG 117
G G PG+ G RA P+ +AP + +P RR CCAG
Sbjct: 32 GGGSSPGEADTGRRRALMLPAVLQAPGNHQHPHRITNFFIDNILRPEFGRRKDAGTCCAG 91
Query: 118 QGPPR---------------SLQQGGSEVLLGQLCSPEPDWLPSSGPKVAKQVFQVAAEL 162
G R GGSE LLG S EP P P + ++
Sbjct: 92 AGGGRGGGAGGEGGASGAEGGGGAGGSEQLLGS-GSREPRQNPPCAPGAGGPLPAAGSDS 150
Query: 163 LQHPEHFVPSSVPEGCVHK---PGSTCDGSLKGR 193
E + G K PG DGSLK R
Sbjct: 151 PGDGEGGSKTLSLHGGAKKGGDPGGPLDGSLKAR 184
>gi|157502173 hypothetical protein LOC348487 [Homo sapiens]
Length = 280
Score = 29.3 bits (64), Expect = 2.7
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 138 SPEPDWLPS-SGPKVAKQVFQVAAELLQHPEHFVPSSVPEGCVHKPGS 184
SP PD PS P + Q + LQH + PEG H PGS
Sbjct: 215 SPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPPGS 262
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 28.9 bits (63), Expect = 3.5
Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 56 LAGSSSSFNVLIPTRDEDGDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCC 115
LAG S S + P+ G+ P +A S A G+P P CRRATP+
Sbjct: 203 LAGPSLSSSSFSPSSSPPPPGDLPLSPSA-FSAAPGTPLARRDPTPVCCPSCRRATPI-- 259
Query: 116 AGQGPPRSLQQGGSEVLLGQLCSPEPDWLPSSG 148
+ GP L + S LG +PD SSG
Sbjct: 260 SVWGPLGGLVRTPSVQSLGS----DPDEYASSG 288
>gi|148806902 TBC1 domain family, member 12 [Homo sapiens]
Length = 775
Score = 28.9 bits (63), Expect = 3.5
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 77 EGPGDVTAGVSRAAGSPSGWEAPWVQQPRCC 107
EGPGD A AGSPS W +P R C
Sbjct: 175 EGPGDEDAD---GAGSPSDWASPLEDPLRSC 202
>gi|15529976 zinc finger protein 764 [Homo sapiens]
Length = 408
Score = 28.9 bits (63), Expect = 3.5
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 70 RDEDGDG--EGPGDVTAGV-------SRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGP 120
R +G G E P V AG + +AG P GWE Q + R P CA
Sbjct: 113 RQREGTGALEKPDPVAAGSPGLKSPQAPSAGPPYGWE----QLSKAPHRGRPSLCAHPPV 168
Query: 121 PRSLQQGGSEV 131
PR+ Q+ G V
Sbjct: 169 PRADQRHGCYV 179
>gi|28416436 ADP-ribosylation factor GTPase activating protein 1
isoform b [Homo sapiens]
Length = 414
Score = 28.5 bits (62), Expect = 4.5
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 39 QPFLRFLQQPFFLATASLAGSSSSFNVLIPTRDEDGDGEGPGDVTAGVSRAAGSPSG 95
Q F QQP AS G S + NVL P +++ +G+ DV++GVS+ A G
Sbjct: 238 QKFWGHKQQP---EPASELGHSLNENVLKPAQEKVKEGKIFDDVSSGVSQLASKGVG 291
>gi|27502386 nuclear factor of activated T-cells, cytosolic
component 1 isoform C [Homo sapiens]
Length = 930
Score = 28.5 bits (62), Expect = 4.5
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 87 SRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGPPRSLQQGGSEVLLGQLCSPEPDWLPS 146
S SPS P Q+P C + +P C G P+ L + D P+
Sbjct: 828 SLCPSSPSPPLPPATQEPTCLQPCSPACPPATGRPQHLPS-----------TVRRDESPT 876
Query: 147 SGPKVAKQVFQ 157
+GP++ +V +
Sbjct: 877 AGPRLLPEVHE 887
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 28.5 bits (62), Expect = 4.5
Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 56 LAGSSSSFNVLIPTRDEDGDGEGPGDVTAGVSRA-----------AGSPSGWEA----PW 100
L + ++ + +P G G GPG SR A SP+ +A P
Sbjct: 46 LPAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKEPLGNQRAASPTPKQASATTPG 105
Query: 101 VQQPRCCRRATPVCCAGQGPPRSLQQGGSEVLLGQLCSPEPD-----WLPSSGPKVA 152
+ PR R P GP R+LQ G+ S PD P S P++A
Sbjct: 106 HESPRETRAQGPAGQEADGPRRTLQVDSRTQRSGRSPSVSPDRGSTPTSPYSVPQIA 162
>gi|21735575 junctophilin 1 [Homo sapiens]
Length = 661
Score = 28.5 bits (62), Expect = 4.5
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 148 GPKVAKQVFQVAAELLQHPEHFVPSSVPEGCVHKPGSTCDGSLKGRAYPSCVPKRDPEHS 207
GP KQ FQ + ++PE VP P P + KG P R PE S
Sbjct: 420 GPDYVKQRFQEGVDAKENPEEKVPEKPP-----TPKESPHFYRKG-----TTPPRSPEAS 469
Query: 208 REESH 212
+ SH
Sbjct: 470 PKHSH 474
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 28.5 bits (62), Expect = 4.5
Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 17/127 (13%)
Query: 16 QICIP-GKPPSVVECFLTEMQCWQQPFLRFLQQPFFLATASLAGSSSSFNVLIP----TR 70
++C P G PP VV + L++ A AG P T
Sbjct: 504 ELCAPDGAPPGVVPVLSAHSPSLGSEYFIRLEE-----AAPAAGHDPDCAGCAPSPPATA 558
Query: 71 DEDGDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRR--ATPVCCAGQGP-----PRS 123
D+D D +G + + G + PW + RR A C + P P S
Sbjct: 559 DQDDDSDGSTAASLAMEPLLGHGPPVDVPWGRGDHYPRRSLARDPLCPSRSPSPSAGPLS 618
Query: 124 LQQGGSE 130
L +GG+E
Sbjct: 619 LAEGGAE 625
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 28.5 bits (62), Expect = 4.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 145 PSSGPKVAKQVFQVA-AELLQHPEHFVPSSVPEGCV------HKPGSTCDGSLKGRAYPS 197
P P +AK+ ++ +EL Q+ H VP + + V PGS C S +G PS
Sbjct: 847 PLKSPSLAKKDSLISESELSQYFAHDVPGPLSDFMVAGSEDEDHPGSGCSTSEEGSLPPS 906
Query: 198 CVPKRDPEHSREES 211
++P R S
Sbjct: 907 TSTHKEPGKPRANS 920
>gi|4503811 fucosyltransferase 4 [Homo sapiens]
Length = 530
Score = 28.1 bits (61), Expect = 5.9
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 68 PTRDEDGDGEGPGDVTAGV----SRAAGSPSGWEAPWVQQPRCCRRATP 112
P R G G+GP + +G SRA+G P +Q CR +TP
Sbjct: 63 PARHLGGAGQGPRPLHSGTAPFHSRASGERQRRLEPQLQHESRCRSSTP 111
>gi|239743602 PREDICTED: hypothetical protein XP_002342903 [Homo
sapiens]
Length = 675
Score = 28.1 bits (61), Expect = 5.9
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 74 GDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGPPRSLQQGGSEVLL 133
G G+GPGD + V G+ E RC R +C G RS Q G V
Sbjct: 401 GQGKGPGDSSCRVCCRCGT----EYLVSSSGRCVR--DQLCYYHWGRVRSSQVAGGRVSQ 454
Query: 134 GQLCSPEPDWLPSSGPKVAKQ 154
C+ P S G +VAKQ
Sbjct: 455 YTCCAAAPG---SVGCQVAKQ 472
>gi|239743600 PREDICTED: hypothetical protein XP_002342902 [Homo
sapiens]
Length = 675
Score = 28.1 bits (61), Expect = 5.9
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 74 GDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGPPRSLQQGGSEVLL 133
G G+GPGD + V G+ E RC R +C G RS Q G V
Sbjct: 401 GQGKGPGDSSCRVCCRCGT----EYLVSSSGRCVR--DQLCYYHWGRVRSSQVAGGRVSQ 454
Query: 134 GQLCSPEPDWLPSSGPKVAKQ 154
C+ P S G +VAKQ
Sbjct: 455 YTCCAAAPG---SVGCQVAKQ 472
>gi|239743598 PREDICTED: hypothetical protein XP_002342901 [Homo
sapiens]
Length = 675
Score = 28.1 bits (61), Expect = 5.9
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 74 GDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGPPRSLQQGGSEVLL 133
G G+GPGD + V G+ E RC R +C G RS Q G V
Sbjct: 401 GQGKGPGDSSCRVCCRCGT----EYLVSSSGRCVR--DQLCYYHWGRVRSSQVAGGRVSQ 454
Query: 134 GQLCSPEPDWLPSSGPKVAKQ 154
C+ P S G +VAKQ
Sbjct: 455 YTCCAAAPG---SVGCQVAKQ 472
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,563,691
Number of Sequences: 37866
Number of extensions: 647860
Number of successful extensions: 1839
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1828
Number of HSP's gapped (non-prelim): 51
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.